DK945282 |
Clone id |
YMU02A01NGRL0008_N03 |
Library |
YMU02 |
Length |
463 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N03. 5' end sequence. |
Accession |
DK945282 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL124Contig1 |
Sequence |
GCCTGCGCTCTTTGCTAAGTTATTGGAAAAGCGCAGTGTCGAAGATCTGATCACCAATGT TGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCTGGAGG TGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAGGGAAGAAAGCGA CGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAGCCCAA TTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTTGTAAT TGCCTTGCTATTCAGTAAAAAACCATGATCACTTCTCACCGACTCATCCTGTGTTTTTGT CAAGAGCTTTGTTTCCTGTCTTGGATGTGCTCCTTGTATTTCCTATTGCAAGTATATGGC TTGGTTCATTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52855 |
Definition |
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays |
Align length |
69 |
Score (bit) |
44.3 |
E-value |
0.0002 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7R8D5 |
Definition |
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
69 |
Score (bit) |
50.4 |
E-value |
4.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945282|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_N03, 5' (434 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 50 4e-05 tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 50 7e-05 tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 50 7e-05 tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 45 0.001 tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 45 0.001 tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 45 0.002 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 44 0.003 tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003 tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003 tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003 tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 44 0.005 tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 42 0.015 tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 42 0.020 tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 42 0.020 tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 42 0.020 tr|B6TBN5|B6TBN5_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.034 tr|Q17FT7|Q17FT7_AEDAE Acidic ribosomal protein P1, putative OS=... 34 0.041 tr|A9PE33|A9PE33_POPTR Putative uncharacterized protein OS=Popul... 40 0.058 tr|Q6XIN9|Q6XIN9_DROYA RpLP1 (Fragment) OS=Drosophila yakuba GN=... 40 0.058 tr|B4Q638|B4Q638_DROSI GD23023 OS=Drosophila simulans GN=GD23023... 40 0.058 tr|B4LTL2|B4LTL2_DROVI GJ17775 OS=Drosophila virilis GN=GJ17775 ... 40 0.058 tr|B4KFI9|B4KFI9_DROMO GI21657 OS=Drosophila mojavensis GN=GI216... 40 0.058 tr|B4JDP3|B4JDP3_DROGR GH11223 OS=Drosophila grimshawi GN=GH1122... 40 0.058 tr|B4ICW8|B4ICW8_DROSE GM16740 OS=Drosophila sechellia GN=GM1674... 40 0.058 tr|B3N7Q2|B3N7Q2_DROER GG24717 OS=Drosophila erecta GN=GG24717 P... 40 0.058
>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011306001 PE=4 SV=1 Length = 111
Score = 50.4 bits (119), Expect = 4e-05 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 P LFAKL+EKRS+EDLITNVGS SD Sbjct: 43 PLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKEEPKEESD 102
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 103 DDMGFSLFD 111
>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001 PE=4 SV=1 Length = 111
Score = 49.7 bits (117), Expect = 7e-05 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKL+EKR+VEDLI NVGS SD Sbjct: 43 PALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESD 102
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 103 DDMGFSLFD 111
>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018396 PE=4 SV=1 Length = 111
Score = 49.7 bits (117), Expect = 7e-05 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKL+EKR+VEDLI NVGS SD Sbjct: 43 PALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESD 102
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 103 DDMGFSLFD 111
>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 45.4 bits (106), Expect = 0.001 Identities = 31/69 (44%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKRSVEDLI +VGS SD Sbjct: 43 PALFAKLLEKRSVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAAEEKKEEPKEESD 100
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 101 DDMGFSLFD 109
>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 45.4 bits (106), Expect = 0.001 Identities = 31/69 (44%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKRSVEDLI +VGS SD Sbjct: 43 PALFAKLLEKRSVEDLILSVGS--GGGAAPVAASAPAGGAAAAAAPAAEEKKEEPKEESD 100
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 101 DDMGFSLFD 109
>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001 PE=4 SV=1 Length = 111
Score = 45.1 bits (105), Expect = 0.002 Identities = 27/69 (39%), Positives = 31/69 (44%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 P LFAKL+EK+SV+DLI NVGS SD Sbjct: 43 PGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKEEPKEESD 102
Query: 182 DDMGFSLFD 208 +DMGFSLFD Sbjct: 103 EDMGFSLFD 111
>tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum PE=4 SV=1 Length = 110
Score = 44.3 bits (103), Expect = 0.003 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKRSV+DLI +VGS SD Sbjct: 43 PALFAKLLEKRSVDDLILSVGS-GGGGAPAAAAAAPAAGGAAAAEEKKEEKKEEAKEESD 101
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 102 DDMGFSLFD 110
>tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 44.3 bits (103), Expect = 0.003 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKR+VEDLI +VGS SD Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESD 100
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 101 DDMGFSLFD 109
>tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 44.3 bits (103), Expect = 0.003 Identities = 31/69 (44%), Positives = 33/69 (47%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKR+VEDLI +VGS SD Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAVXAAAAAAPAVEEKKEEAKEESD 100
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 101 DDMGFSLFD 109
>tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 44.3 bits (103), Expect = 0.003 Identities = 30/69 (43%), Positives = 32/69 (46%) Frame = +2
Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181 PALFAKLLEKR+VEDLI +VGS SD Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESD 100
Query: 182 DDMGFSLFD 208 DDMGFSLFD Sbjct: 101 DDMGFSLFD 109
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