DK945282
Clone id YMU02A01NGRL0008_N03
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCCTGCGCTCTTTGCTAAGTTATTGGAAAAGCGCAGTGTCGAAGATCTGATCACCAATGT
TGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCTGGAGG
TGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAGGGAAGAAAGCGA
CGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAGCCCAA
TTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTTGTAAT
TGCCTTGCTATTCAGTAAAAAACCATGATCACTTCTCACCGACTCATCCTGTGTTTTTGT
CAAGAGCTTTGTTTCCTGTCTTGGATGTGCTCCTTGTATTTCCTATTGCAAGTATATGGC
TTGGTTCATTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P52855
Definition sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
Align length 69
Score (bit) 44.3
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945282|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N03, 5'
(434 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays... 44 2e-04
sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophi... 40 0.004
sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1 OS=Arabi... 37 0.035
sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 OS=Chlamydo... 37 0.046
sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3 OS=Arabi... 33 0.39
sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2 OS=Arabi... 33 0.39
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ... 33 0.51
sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Aspergil... 33 0.66
sp|P50344|RLA1_CLAHE 60S acidic ribosomal protein P1 OS=Cladospo... 32 0.86
sp|O01359|RLA1_OSCBR 60S acidic ribosomal protein P1 OS=Oscheius... 32 1.5
sp|P49148|RLA1_ALTAL 60S acidic ribosomal protein P1 OS=Alternar... 30 3.3
sp|Q9BXX2|AN30B_HUMAN Ankyrin repeat domain-containing protein 3... 30 4.3
sp|P91913|RLA1_CAEEL 60S acidic ribosomal protein P1 OS=Caenorha... 30 5.6

>sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
GN=RPP1A PE=1 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKR+VEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109


>sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophila
melanogaster GN=RpLP1 PE=1 SV=2
Length = 112

Score = 40.0 bits (92), Expect = 0.004
Identities = 25/69 (36%), Positives = 28/69 (40%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
P LFAK LE +V+DLITN+GS SD
Sbjct: 44 PGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSD 103

Query: 182 DDMGFSLFD 208
DDMGF LFD
Sbjct: 104 DDMGFGLFD 112


>sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1
OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2
Length = 112

Score = 37.0 bits (84), Expect = 0.035
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
P LFAK+ EKR+V DLI NVG+ SD
Sbjct: 44 PMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESD 103

Query: 182 DDMGFSLFD 208
D+GF LFD
Sbjct: 104 GDLGFGLFD 112


>sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1
OS=Chlamydomonas reinhardtii PE=3 SV=1
Length = 107

Score = 36.6 bits (83), Expect = 0.046
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGS 67
PALFAKL K+S++DLITNVG+
Sbjct: 43 PALFAKLFAKKSMDDLITNVGA 64


>sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3
OS=Arabidopsis thaliana GN=RPP1C PE=2 SV=2
Length = 113

Score = 33.5 bits (75), Expect = 0.39
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGS 67
P LFAK+ EKR+V DLI NVG+
Sbjct: 44 PMLFAKMAEKRNVTDLIMNVGA 65


>sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2
OS=Arabidopsis thaliana GN=RPP1B PE=2 SV=2
Length = 113

Score = 33.5 bits (75), Expect = 0.39
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGS 67
P LFAK+ EKR+V DLI NVG+
Sbjct: 44 PMLFAKMAEKRNVTDLIMNVGA 65


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
Length = 499

Score = 33.1 bits (74), Expect = 0.51
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Frame = -3

Query: 381 RQETKLLTKTQ-----DESVRSDHGFLLNSKAITRF--------SGILNFDKHHTIIPTK 241
RQET+ LTKT R+DH + ++RF S +LN+D HHT P +
Sbjct: 409 RQETRDLTKTMFNRQFGSIFRTDHNPTYFLRRLSRFADIYMESLSSLLNYDLHHTFYPKR 468

Query: 240 LGYQ 229
Q
Sbjct: 469 TPLQ 472


>sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Aspergillus
fumigatus GN=AFUA_1G06830 PE=3 SV=1
Length = 111

Score = 32.7 bits (73), Expect = 0.66
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2

Query: 5 ALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDD 184
+LFAK LE + ++DL+TNVGS SD+
Sbjct: 45 SLFAKALEGKDIKDLLTNVGS-GGAAAPAAVGGAAAGAAAPAEAAAAEEKKEEEKEESDE 103

Query: 185 DMGFSLFD 208
DMGF LFD
Sbjct: 104 DMGFGLFD 111


>sp|P50344|RLA1_CLAHE 60S acidic ribosomal protein P1
OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1
Length = 110

Score = 32.3 bits (72), Expect = 0.86
Identities = 23/68 (33%), Positives = 27/68 (39%)
Frame = +2

Query: 5 ALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDD 184
+LFAK LE + V+DL+ NVGS SDD
Sbjct: 45 SLFAKALEGKDVKDLLLNVGS--GGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDD 102

Query: 185 DMGFSLFD 208
DMGF LFD
Sbjct: 103 DMGFGLFD 110


>sp|O01359|RLA1_OSCBR 60S acidic ribosomal protein P1 OS=Oscheius
brevesophaga GN=rpl-21 PE=3 SV=1
Length = 112

Score = 31.6 bits (70), Expect = 1.5
Identities = 22/69 (31%), Positives = 25/69 (36%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
P LFAK LE V++LIT+V S SD
Sbjct: 44 PGLFAKALEGVDVKNLITSVSSGASAGPAQAAAAAPAGGAPAAAAPAESKEGRRSQGESD 103

Query: 182 DDMGFSLFD 208
DDMGF L D
Sbjct: 104 DDMGFGLLD 112


tr_hit_id A7R8D5
Definition tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera
Align length 69
Score (bit) 50.4
E-value 4.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945282|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N03, 5'
(434 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 50 4e-05
tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 50 7e-05
tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 50 7e-05
tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 45 0.001
tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 45 0.001
tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 45 0.002
tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 44 0.003
tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003
tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003
tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003
tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004
tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 44 0.005
tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 42 0.015
tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 42 0.020
tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 42 0.020
tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 42 0.020
tr|B6TBN5|B6TBN5_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.034
tr|Q17FT7|Q17FT7_AEDAE Acidic ribosomal protein P1, putative OS=... 34 0.041
tr|A9PE33|A9PE33_POPTR Putative uncharacterized protein OS=Popul... 40 0.058
tr|Q6XIN9|Q6XIN9_DROYA RpLP1 (Fragment) OS=Drosophila yakuba GN=... 40 0.058
tr|B4Q638|B4Q638_DROSI GD23023 OS=Drosophila simulans GN=GD23023... 40 0.058
tr|B4LTL2|B4LTL2_DROVI GJ17775 OS=Drosophila virilis GN=GJ17775 ... 40 0.058
tr|B4KFI9|B4KFI9_DROMO GI21657 OS=Drosophila mojavensis GN=GI216... 40 0.058
tr|B4JDP3|B4JDP3_DROGR GH11223 OS=Drosophila grimshawi GN=GH1122... 40 0.058
tr|B4ICW8|B4ICW8_DROSE GM16740 OS=Drosophila sechellia GN=GM1674... 40 0.058
tr|B3N7Q2|B3N7Q2_DROER GG24717 OS=Drosophila erecta GN=GG24717 P... 40 0.058

>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00011306001 PE=4 SV=1
Length = 111

Score = 50.4 bits (119), Expect = 4e-05
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
P LFAKL+EKRS+EDLITNVGS SD
Sbjct: 43 PLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKEEPKEESD 102

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 103 DDMGFSLFD 111


>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001
PE=4 SV=1
Length = 111

Score = 49.7 bits (117), Expect = 7e-05
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKL+EKR+VEDLI NVGS SD
Sbjct: 43 PALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESD 102

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 103 DDMGFSLFD 111


>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018396 PE=4 SV=1
Length = 111

Score = 49.7 bits (117), Expect = 7e-05
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKL+EKR+VEDLI NVGS SD
Sbjct: 43 PALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESD 102

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 103 DDMGFSLFD 111


>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 45.4 bits (106), Expect = 0.001
Identities = 31/69 (44%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKRSVEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRSVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAAEEKKEEPKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109


>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 45.4 bits (106), Expect = 0.001
Identities = 31/69 (44%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKRSVEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRSVEDLILSVGS--GGGAAPVAASAPAGGAAAAAAPAAEEKKEEPKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109


>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001
PE=4 SV=1
Length = 111

Score = 45.1 bits (105), Expect = 0.002
Identities = 27/69 (39%), Positives = 31/69 (44%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
P LFAKL+EK+SV+DLI NVGS SD
Sbjct: 43 PGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKEEPKEESD 102

Query: 182 DDMGFSLFD 208
+DMGFSLFD
Sbjct: 103 EDMGFSLFD 111


>tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum
PE=4 SV=1
Length = 110

Score = 44.3 bits (103), Expect = 0.003
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKRSV+DLI +VGS SD
Sbjct: 43 PALFAKLLEKRSVDDLILSVGS-GGGGAPAAAAAAPAAGGAAAAEEKKEEKKEEAKEESD 101

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 102 DDMGFSLFD 110


>tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 0.003
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKR+VEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109


>tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 0.003
Identities = 31/69 (44%), Positives = 33/69 (47%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKR+VEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAVXAAAAAAPAVEEKKEEAKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109


>tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 0.003
Identities = 30/69 (43%), Positives = 32/69 (46%)
Frame = +2

Query: 2 PALFAKLLEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 181
PALFAKLLEKR+VEDLI +VGS SD
Sbjct: 43 PALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESD 100

Query: 182 DDMGFSLFD 208
DDMGFSLFD
Sbjct: 101 DDMGFSLFD 109