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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945285
Clone id YMU02A01NGRL0008_N06
Library
Length 303
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTATGGATGTTTTACGAATGGCGCAAACAAACGGAGCAGTGGCTAATAATGCTATCGACC
AACTTGCAACTTTGTCCTTGAGTGAGCCCCTAACTACTTAAGAGGGAAATTCTGTAAGGA
CATTTCGGATTGTGCACTTTTGGATTCTGTTTGGATGGATCTTAGGCTGTTTTTGGACTT
TTGATACTGGAACGGTGTGGCTTGTGTGATGAGAGGTTTCCACGGCTTGCTGTAATACTG
GCTTTTCATGAATTTGGTATGTTTCTGGTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id Q87E70
Definition sp|Q87E70|RL5_XYLFT 50S ribosomal protein L5 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Align length 50
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945285|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N06, 5'
         (270 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q87E70|RL5_XYLFT 50S ribosomal protein L5 OS=Xylella fastidio...    32   1.3  
sp|Q9PE64|RL5_XYLFA 50S ribosomal protein L5 OS=Xylella fastidio...    32   1.3  
sp|Q5XW65|PLUNC_PIG Protein Plunc OS=Sus scrofa GN=Plunc PE=2 SV=1     32   1.3  
sp|Q3BWX1|RL5_XANC5 50S ribosomal protein L5 OS=Xanthomonas camp...    30   2.9  
sp|Q8PNR4|RL5_XANAC 50S ribosomal protein L5 OS=Xanthomonas axon...    30   2.9  
sp|Q8PC39|RL5_XANCP 50S ribosomal protein L5 OS=Xanthomonas camp...    29   6.4  
sp|Q4URF1|RL5_XANC8 50S ribosomal protein L5 OS=Xanthomonas camp...    29   6.4  
sp|A8GT57|RL5_RICRS 50S ribosomal protein L5 OS=Rickettsia ricke...    29   6.4  
sp|B0BUP8|RL5_RICRO 50S ribosomal protein L5 OS=Rickettsia ricke...    29   6.4  
sp|B0UV22|COAA_HAES2 Pantothenate kinase OS=Haemophilus somnus (...    29   6.4  
sp|Q0I1U8|COAA_HAES1 Pantothenate kinase OS=Haemophilus somnus (...    29   6.4  
sp|Q4L8A2|RL5_STAHJ 50S ribosomal protein L5 OS=Staphylococcus h...    29   8.4  
sp|Q8CRH2|RL5_STAES 50S ribosomal protein L5 OS=Staphylococcus e...    29   8.4  
sp|Q5HM11|RL5_STAEQ 50S ribosomal protein L5 OS=Staphylococcus e...    29   8.4  

>sp|Q87E70|RL5_XYLFT 50S ribosomal protein L5 OS=Xylella fastidiosa
           (strain Temecula1 / ATCC 700964) GN=rplE PE=3 SV=1
          Length = 179

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  V  NA+  +A +S  +P+ T    SV +F+I +     GW +GC
Sbjct: 43  AATNKKVLENALADMAKISGQKPIVTKSRISVASFKIRN-----GWPIGC 87


>sp|Q9PE64|RL5_XYLFA 50S ribosomal protein L5 OS=Xylella fastidiosa
           GN=rplE PE=3 SV=1
          Length = 179

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  V  NA+  +A +S   P+ T    SV +F+I +     GW +GC
Sbjct: 43  AATNKKVLENAVADMAKISGQRPIVTKSRISVASFKIRN-----GWPIGC 87


>sp|Q5XW65|PLUNC_PIG Protein Plunc OS=Sus scrofa GN=Plunc PE=2 SV=1
          Length = 249

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 89  GLTQGQSCKLVDSIISHCSVCLRHS 15
           GL QG+ C LV+ ++SH  V L HS
Sbjct: 210 GLVQGEVCPLVNEVLSHLDVTLVHS 234


>sp|Q3BWX1|RL5_XANC5 50S ribosomal protein L5 OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=rplE PE=3
           SV=1
          Length = 180

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  +  NA+  +A +S  +P+ T    SV +F+I       GW +GC
Sbjct: 44  AATNKKILENAVADMAKISGQKPVVTKSRVSVASFKIRD-----GWPIGC 88


>sp|Q8PNR4|RL5_XANAC 50S ribosomal protein L5 OS=Xanthomonas
           axonopodis pv. citri GN=rplE PE=3 SV=1
          Length = 180

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  +  NA+  +A +S  +P+ T    SV +F+I       GW +GC
Sbjct: 44  AATNKKILENAVADMAKISGQKPVVTKSRVSVASFKIRD-----GWPIGC 88


>sp|Q8PC39|RL5_XANCP 50S ribosomal protein L5 OS=Xanthomonas
           campestris pv. campestris GN=rplE PE=3 SV=1
          Length = 180

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  +  NA+  ++ +S  +P+ T    SV +F+I       GW +GC
Sbjct: 44  AATNKKILENAVADMSKISGQKPVVTKSRVSVASFKIRD-----GWPIGC 88


>sp|Q4URF1|RL5_XANC8 50S ribosomal protein L5 OS=Xanthomonas
           campestris pv. campestris (strain 8004) GN=rplE PE=3
           SV=1
          Length = 180

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRIVHFWILFGWILGC 170
           A TN  +  NA+  ++ +S  +P+ T    SV +F+I       GW +GC
Sbjct: 44  AATNKKILENAVADMSKISGQKPVVTKSRVSVASFKIRD-----GWPIGC 88


>sp|A8GT57|RL5_RICRS 50S ribosomal protein L5 OS=Rickettsia
           rickettsii (strain Sheila Smith) GN=rplE PE=3 SV=1
          Length = 179

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRI 131
           A  N  V NNA++ L  +S  +P+ T    S+ TF++
Sbjct: 43  ATANSKVINNAVNDLTLISGQKPVVTLARKSIATFKL 79


>sp|B0BUP8|RL5_RICRO 50S ribosomal protein L5 OS=Rickettsia
           rickettsii (strain Iowa) GN=rplE PE=3 SV=1
          Length = 179

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  AQTNGAVANNAIDQLATLSLSEPLTT*EGNSVRTFRI 131
           A  N  V NNA++ L  +S  +P+ T    S+ TF++
Sbjct: 43  ATANSKVINNAVNDLTLISGQKPVVTLARKSIATFKL 79


>sp|B0UV22|COAA_HAES2 Pantothenate kinase OS=Haemophilus somnus
           (strain 2336) GN=coaA PE=3 SV=1
          Length = 317

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 134 HNPKCPYRISLLSS*GLTQGQSCKLVDSIISHCSV 30
           HNPK PY IS+  S  + +  S +++ S++++  V
Sbjct: 87  HNPKVPYIISIAGSVSVGKSTSARILQSLLANWPV 121
tr_hit_id Q94IQ3
Definition tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2 (Fragment) OS=Anemia phyllitidis
Align length 32
Score (bit) 40.0
E-value 0.057
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945285|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N06, 5'
         (270 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2 (Fr...    40   0.057
tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia ph...    36   1.1  
tr|A8NA90|A8NA90_COPC7 Putative uncharacterized protein OS=Copri...    34   4.1  
tr|B4JK48|B4JK48_DROGR GH12590 OS=Drosophila grimshawi GN=GH1259...    33   9.1  
tr|B4PWT3|B4PWT3_DROYA GE15468 OS=Drosophila yakuba GN=GE15468 P...    33   9.2  

>tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2
           (Fragment) OS=Anemia phyllitidis GN=Pab2 PE=2 SV=1
          Length = 472

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 3   MDVLRMAQTNGAVANNAIDQLATLSLSEPLTT 98
           MDVL+MAQ N   + N ID  A+LSL+EPL +
Sbjct: 441 MDVLQMAQANAGASTNGIDHFASLSLNEPLAS 472


>tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia
           phyllitidis PE=2 SV=1
          Length = 638

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/33 (60%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = +3

Query: 3   MDVLRMAQTNGAVANNA-IDQLATLSLSEPLTT 98
           MDVLRMAQ  G++++N+ +DQLA+LSL+E LT+
Sbjct: 608 MDVLRMAQ--GSISSNSPLDQLASLSLTESLTS 638


>tr|A8NA90|A8NA90_COPC7 Putative uncharacterized protein
            OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
            9003) GN=CC1G_08346 PE=4 SV=1
          Length = 1882

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/76 (34%), Positives = 34/76 (44%)
 Frame = -3

Query: 268  PETYQIHEKPVLQQAVETSHHTSHTVPVSKVQKQPKIHPNRIQKCTIRNVLTEFPS*VVR 89
            P   Q+H    L     T   +S   P+S     P+ H  RI    +RN  T   S ++R
Sbjct: 1507 PADIQVHLIEALSIFASTQSDSSDEDPLSLTS--PRSHCLRICSQILRNSTTASRSGIIR 1564

Query: 88   GSLKDKVASWSIALLA 41
            GS  DKVA  S A+ A
Sbjct: 1565 GSPSDKVALVSAAISA 1580


>tr|B4JK48|B4JK48_DROGR GH12590 OS=Drosophila grimshawi GN=GH12590
           PE=4 SV=1
          Length = 179

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 252 FMKSQYYSKPWKPLITQATPFQYQKSKNSLRSIQTESKSAQSE 124
           + +S  Y+ PW+PLI + TP   Q+        QT  + AQS+
Sbjct: 21  YYQSWLYATPWRPLIGRQTPLDLQQLSLGYTGPQTFPEQAQSQ 63


>tr|B4PWT3|B4PWT3_DROYA GE15468 OS=Drosophila yakuba GN=GE15468 PE=4
           SV=1
          Length = 1524

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 268 PETYQIHEKPVLQQAVETSHHTSHTVPVSKVQKQPKIHPNRIQK 137
           P  YQ+HE P++ Q  E +H     + +  +Q Q +     +QK
Sbjct: 251 PLHYQVHEHPIVTQIQEETHQVVPEIQIKNIQDQDEQTDTHVQK 294