DK945286
Clone id YMU02A01NGRL0008_N07
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GACCGTCATCATCCATGATGCTGTAATGATTGGACAGTATTGGGAATGAGTTCTAGGAAC
TTCTAATGGATGGAAAATATATTTTAGTTTGATGGTACAAGATCGTGTGAATGGGGTCAT
AGAACCGTTGGTTGGCTCCAGTGGATTGTGATGGTGTAGTTTGTTGGTTATGACTTGGAT
ATGAATTATTTATTTGGCTCTTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q88UX7
Definition sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus plantarum
Align length 36
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N07, 5'
(207 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus plant... 29 6.4
sp|A4IZU9|SYE_FRATW Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|Q5NHY6|SYE_FRATT Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|Q0BNU3|SYE_FRATO Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|A0Q4G6|SYE_FRATN Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|Q2A5I8|SYE_FRATH Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|A7N9Q8|SYE_FRATF Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4
sp|Q14JD8|SYE_FRAT1 Glutamyl-tRNA synthetase OS=Francisella tula... 29 6.4

>sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus
plantarum GN=valS PE=3 SV=1
Length = 889

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1

Query: 67 WMENIF*FDGTRSCEWGHRTVGWLQWIVMV*FVGYD 174
WMENI + +R WGHR W +VG D
Sbjct: 406 WMENIHDWVISRQLWWGHRIPAWYNKTTGETYVGVD 441


>sp|A4IZU9|SYE_FRATW Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. tularensis (strain WY96-3418) GN=gltX
PE=3 SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q5NHY6|SYE_FRATT Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. tularensis GN=gltX PE=3 SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q0BNU3|SYE_FRATO Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. holarctica (strain OSU18) GN=gltX PE=3
SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|A0Q4G6|SYE_FRATN Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. novicida (strain U112) GN=gltX PE=3
SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q2A5I8|SYE_FRATH Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. holarctica (strain LVS) GN=gltX PE=3
SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|A7N9Q8|SYE_FRATF Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. holarctica (strain FTA) GN=gltX PE=3
SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q14JD8|SYE_FRAT1 Glutamyl-tRNA synthetase OS=Francisella
tularensis subsp. tularensis (strain FSC 198) GN=gltX
PE=3 SV=1
Length = 468

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2

Query: 17 DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
DA++ G W LG N +IY+ DR VI+ L+ +CS
Sbjct: 54 DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


tr_hit_id A7IP26
Definition tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Align length 36
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N07, 5'
(207 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39 OS=Xanthob... 35 1.8

>tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39
OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
Py2) GN=Xaut_4551 PE=4 SV=1
Length = 577

Score = 35.0 bits (79), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2

Query: 86 SLMVQDRVNGVIEPLVGSSGL*WCSLLVMTWI*IIY 193
+L + +R G ++PL GL WC+LLV+ W IY
Sbjct: 232 ALAIVERSGGFLKPLKPLMGLAWCALLVLPWFVAIY 267