NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945286
Clone id YMU02A01NGRL0008_N07
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACCGTCATCATCCATGATGCTGTAATGATTGGACAGTATTGGGAATGAGTTCTAGGAAC
TTCTAATGGATGGAAAATATATTTTAGTTTGATGGTACAAGATCGTGTGAATGGGGTCAT
AGAACCGTTGGTTGGCTCCAGTGGATTGTGATGGTGTAGTTTGTTGGTTATGACTTGGAT
ATGAATTATTTATTTGGCTCTTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q88UX7
Definition sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus plantarum
Align length 36
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N07, 5'
         (207 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus plant...    29   6.4  
sp|A4IZU9|SYE_FRATW Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|Q5NHY6|SYE_FRATT Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|Q0BNU3|SYE_FRATO Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|A0Q4G6|SYE_FRATN Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|Q2A5I8|SYE_FRATH Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|A7N9Q8|SYE_FRATF Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  
sp|Q14JD8|SYE_FRAT1 Glutamyl-tRNA synthetase OS=Francisella tula...    29   6.4  

>sp|Q88UX7|SYV_LACPL Valyl-tRNA synthetase OS=Lactobacillus
           plantarum GN=valS PE=3 SV=1
          Length = 889

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 67  WMENIF*FDGTRSCEWGHRTVGWLQWIVMV*FVGYD 174
           WMENI  +  +R   WGHR   W        +VG D
Sbjct: 406 WMENIHDWVISRQLWWGHRIPAWYNKTTGETYVGVD 441


>sp|A4IZU9|SYE_FRATW Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. tularensis (strain WY96-3418) GN=gltX
           PE=3 SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q5NHY6|SYE_FRATT Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. tularensis GN=gltX PE=3 SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q0BNU3|SYE_FRATO Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. holarctica (strain OSU18) GN=gltX PE=3
           SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|A0Q4G6|SYE_FRATN Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. novicida (strain U112) GN=gltX PE=3
           SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q2A5I8|SYE_FRATH Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. holarctica (strain LVS) GN=gltX PE=3
           SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|A7N9Q8|SYE_FRATF Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. holarctica (strain FTA) GN=gltX PE=3
           SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98


>sp|Q14JD8|SYE_FRAT1 Glutamyl-tRNA synthetase OS=Francisella
           tularensis subsp. tularensis (strain FSC 198) GN=gltX
           PE=3 SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 17  DAVMIGQYWE*VLGTSNGWKIYFSLMVQDRVNGVIEPLVGSSGL*WCS 160
           DA++ G  W   LG  N  +IY+     DR   VI+ L+      +CS
Sbjct: 54  DAILDGMSW---LGLKNDGEIYYQTKRFDRYKEVIQELIADGKAYYCS 98
tr_hit_id A7IP26
Definition tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Align length 36
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945286|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N07, 5'
         (207 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39 OS=Xanthob...    35   1.8  

>tr|A7IP26|A7IP26_XANP2 Glycosyl transferase family 39
           OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
           Py2) GN=Xaut_4551 PE=4 SV=1
          Length = 577

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 86  SLMVQDRVNGVIEPLVGSSGL*WCSLLVMTWI*IIY 193
           +L + +R  G ++PL    GL WC+LLV+ W   IY
Sbjct: 232 ALAIVERSGGFLKPLKPLMGLAWCALLVLPWFVAIY 267