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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945289
Clone id YMU02A01NGRL0008_N11
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAA
TATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCACGTCACTCAT
TCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAAT
ACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGATG
TCTAAGATAGCTGACTCGTCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTG
GAATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCC
TCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P33434
Definition sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
Align length 43
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N11, 5'
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    32   1.8  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    32   1.8  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    32   1.8  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    31   2.4  
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ...    30   6.8  
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c...    30   6.9  

>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
           OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
          Length = 499

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 125 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLR 3
           TYFLRR S F  + +  + S LNY  H    HTF  K  PL+
Sbjct: 435 TYFLRRLSRFADIYMESLSSLLNYDLH----HTFYPKRTPLQ 472


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
           cuniculus GN=MMP2 PE=2 SV=1
          Length = 662

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLP 23
           W  NKKT+IF  DK + +  +  + DP   ++ A     +P
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIADAWNAIP 616
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N11, 5'
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******