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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945290
Clone id YMU02A01NGRL0008_N12
Library
Length 601
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TCGTCTGCGTGTAGTGTAGTGCAATCTTGGTGAAGAGGAGAGTTCTCAGAAAGAAGAAGA
GTGGAAAGATGGCAGCTGTTGCGGGGATGAAGTGCGGTGTGGCGGCTGGGCTTCCCAGTC
TTACCTGCGCTCCTCGAGGCGCCCGCGCTGCCGCTGCCTCCTCTGTCAGCCTCACAACCC
CGTTTCTGCGCGGATCGTCTGCTGCCGCCTCCTCCTTGACTTTGAGCAACGTACGAAGCG
AGGCCCGCGTTACTTGCTTCGCCCGCGACTGGCTCCGGACAGATTTGTCGGTTATCGGTT
TTGGGTTGATCGGATGGCTCGCACCCTCCAGCATCCCAGCGATCAATGGCCAGAGCCTGA
CTGGTCTCTTCTTCAATAGCATTGGCCCTGAGCTTGCGCACTGGCCCACAGGCCCTGCTC
TTTCATCCCCCTTCTGGTTGTGGATGGTCACCTGGCACATTGGCCTCTTCATTGTTCTCC
TTCTTGGCCAGATTGGATTCAAGGGCCGCAAGGACGGCTACTTCTGAATGCAGGGGTCTT
GCCTCTCTCTCTCTCTCTCTCTCTCTCTGCAACTTACACCTGAAGGCTTGGCTACCTTTG
T
■■Homology search results ■■ -
sp_hit_id A1TZ53
Definition sp|A1TZ53|SURE_MARAV 5'-nucleotidase surE OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)
Align length 45
Score (bit) 31.2
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945290|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N12, 5'
         (601 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1TZ53|SURE_MARAV 5'-nucleotidase surE OS=Marinobacter aquaeo...    31   4.2  
sp|P0AFQ1|YBHR_SHIFL Inner membrane transport permease ybhR OS=S...    30   9.3  
sp|P0AFP9|YBHR_ECOLI Inner membrane transport permease ybhR OS=E...    30   9.3  
sp|P0AFQ0|YBHR_ECO57 Inner membrane transport permease ybhR OS=E...    30   9.3  
sp|P72637|Y1060_SYNY3 UPF0182 protein sll1060 OS=Synechocystis s...    30   9.3  

>sp|A1TZ53|SURE_MARAV 5'-nucleotidase surE OS=Marinobacter aquaeolei
           (strain ATCC 700491 / DSM 11845 / VT8) GN=surE PE=3 SV=1
          Length = 256

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 173 HNPVSARIVCCRLLLDFEQRTKRGPRYLLR---PRLAPDRFVGYR 298
           H   +AR+V  RLLL+++Q  K GPR +L    P L  +R  G+R
Sbjct: 131 HYDTAARVV--RLLLEYKQALKLGPRSILNVNVPDLPWERLSGFR 173


>sp|P0AFQ1|YBHR_SHIFL Inner membrane transport permease ybhR
           OS=Shigella flexneri GN=ybhR PE=3 SV=1
          Length = 368

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 285 LSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALSSPFWLWMVTW 455
           LS++GFGL+     SS+ +   Q+  G+F   +   L      P  + P WL  +TW
Sbjct: 265 LSLVGFGLL----ISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTW 317


>sp|P0AFP9|YBHR_ECOLI Inner membrane transport permease ybhR
           OS=Escherichia coli (strain K12) GN=ybhR PE=1 SV=1
          Length = 368

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 285 LSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALSSPFWLWMVTW 455
           LS++GFGL+     SS+ +   Q+  G+F   +   L      P  + P WL  +TW
Sbjct: 265 LSLVGFGLL----ISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTW 317


>sp|P0AFQ0|YBHR_ECO57 Inner membrane transport permease ybhR
           OS=Escherichia coli O157:H7 GN=ybhR PE=3 SV=1
          Length = 368

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 285 LSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALSSPFWLWMVTW 455
           LS++GFGL+     SS+ +   Q+  G+F   +   L      P  + P WL  +TW
Sbjct: 265 LSLVGFGLL----ISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTW 317


>sp|P72637|Y1060_SYNY3 UPF0182 protein sll1060 OS=Synechocystis sp.
           (strain PCC 6803) GN=sll1060 PE=3 SV=1
          Length = 1032

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 372 FNSIGPELAHWPTGPALSSPFWLWMVTWHIGLFIVLLLG 488
           FN+I P+  H  +      P W  + +W  GLF+  LLG
Sbjct: 256 FNTIDPQFHHDISFYIFQIPLWQLLESWWRGLFLFSLLG 294
tr_hit_id A9TK37
Definition tr|A9TK37|A9TK37_PHYPA PsaO subunit of photosystem I OS=Physcomitrella patens subsp. patens
Align length 151
Score (bit) 181.0
E-value 3.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945290|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N12, 5'
         (601 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TK37|A9TK37_PHYPA PsaO subunit of photosystem I OS=Physcomi...   181   3e-44
tr|A7QF68|A7QF68_VITVI Chromosome undetermined scaffold_87, whol...   165   2e-39
tr|A5BS10|A5BS10_VITVI Putative uncharacterized protein OS=Vitis...   165   2e-39
tr|Q01L93|Q01L93_ORYSA OSIGBa0137L20.7 protein (H0622F05.3 prote...   163   8e-39
tr|A2XT95|A2XT95_ORYSI Putative uncharacterized protein OS=Oryza...   163   8e-39
tr|Q949Q5|Q949Q5_ARATH Putative uncharacterized protein At1g0838...   162   1e-38
tr|Q8L7C3|Q8L7C3_ARATH Expressed protein OS=Arabidopsis thaliana...   162   1e-38
tr|Q7XTG4|Q7XTG4_ORYSJ Os04g0414700 protein OS=Oryza sativa subs...   161   2e-38
tr|B7FN10|B7FN10_MEDTR Putative uncharacterized protein OS=Medic...   161   2e-38
tr|B6SR19|B6SR19_MAIZE 16kDa membrane protein OS=Zea mays PE=2 SV=1   161   3e-38
tr|A9P0U5|A9P0U5_PICSI Putative uncharacterized protein OS=Picea...   160   5e-38
tr|A9NXU3|A9NXU3_PICSI Putative uncharacterized protein OS=Picea...   160   5e-38
tr|A9NMF8|A9NMF8_PICSI Putative uncharacterized protein OS=Picea...   160   5e-38
tr|A9NKV9|A9NKV9_PICSI Putative uncharacterized protein OS=Picea...   160   5e-38
tr|B6SQZ7|B6SQZ7_MAIZE 16kDa membrane protein OS=Zea mays PE=2 SV=1   159   2e-37
tr|A0MAU8|A0MAU8_WHEAT Putative membrane protein OS=Triticum aes...   158   2e-37
tr|Q8S9G3|Q8S9G3_TOBAC Putative 16kDa membrane protein OS=Nicoti...   154   3e-36
tr|A8JCL6|A8JCL6_CHLRE Photosystem I subunit O OS=Chlamydomonas ...   113   1e-23
tr|Q1WLZ4|Q1WLZ4_CHLIN Chloroplast putative 16 kDa membrane prot...   112   2e-23
tr|Q01DH4|Q01DH4_OSTTA Homology to unknown gene OS=Ostreococcus ...    88   4e-16
tr|A4RSB6|A4RSB6_OSTLU Possible psaO, PSI-O, photosystem I polyp...    84   5e-15
tr|Q5K2Q8|Q5K2Q8_GUITH Photosystem I subunit O OS=Guillardia the...    74   8e-12
tr|Q2KV76|Q2KV76_BORA1 Putative membrane protein (Fragment) OS=B...    34   5.6  
tr|A3JAV1|A3JAV1_9ALTE H(+)-transporting ATP synthase, gene 1 OS...    34   5.6  
tr|Q5E6S7|Q5E6S7_VIBF1 Nitrite transporter OS=Vibrio fischeri (s...    34   7.4  
tr|B5FBX6|B5FBX6_VIBFM Nitrite transporter OS=Vibrio fischeri (s...    34   7.4  
tr|P93243|P93243_LINUS Alpha-hydroxynitrile lyase OS=Linum usita...    34   7.4  
tr|O22574|O22574_LINUS (R)-hydroxynitrile lyase OS=Linum usitati...    34   7.4  
tr|B1XR48|B1XR48_SYNP2 Putative uncharacterized protein OS=Synec...    33   9.8  

>tr|A9TK37|A9TK37_PHYPA PsaO subunit of photosystem I
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_108312 PE=4 SV=1
          Length = 144

 Score =  181 bits (459), Expect = 3e-44
 Identities = 94/151 (62%), Positives = 105/151 (69%)
 Frame = +3

Query: 72  AAVAGMKCGVAAGLPSLTCXXXXXXXXXXSSVSLTTPFLRGXXXXXXXLTLSNVRSEARV 251
           AA+A M   V AGL               S V LT+ F+         L +S      RV
Sbjct: 3   AAMASMTTPVVAGLGGSALLANRTS----SKVQLTSAFVPRAVQVNKPLCVS------RV 52

Query: 252 TCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALSSP 431
           TCF RDWLR DLSVIGFGLIGWLAPSS+P ING SLTGLF  SIGPELAH+PTGPAL+SP
Sbjct: 53  TCFNRDWLRKDLSVIGFGLIGWLAPSSLPVINGNSLTGLFLGSIGPELAHFPTGPALTSP 112

Query: 432 FWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           FWLWM+TWH+GLFIVL LGQIGFKGR+DGY+
Sbjct: 113 FWLWMITWHVGLFIVLTLGQIGFKGRQDGYW 143


>tr|A7QF68|A7QF68_VITVI Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037303001 PE=4 SV=1
          Length = 148

 Score =  165 bits (417), Expect = 2e-39
 Identities = 73/93 (78%), Positives = 83/93 (89%)
 Frame = +3

Query: 246 RVTCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALS 425
           + TCF RDWLRTDL+VIGFGLI WLAPSSIPAI+G SLTGLFF+SIG EL+H+PTGPAL+
Sbjct: 56  KFTCFERDWLRTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALT 115

Query: 426 SPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           SPFWLWMVTWH+GLF+ L  GQIGFKGR + YF
Sbjct: 116 SPFWLWMVTWHLGLFLCLTFGQIGFKGRTEDYF 148


>tr|A5BS10|A5BS10_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019056 PE=4 SV=1
          Length = 144

 Score =  165 bits (417), Expect = 2e-39
 Identities = 73/93 (78%), Positives = 83/93 (89%)
 Frame = +3

Query: 246 RVTCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALS 425
           + TCF RDWLRTDL+VIGFGLI WLAPSSIPAI+G SLTGLFF+SIG EL+H+PTGPAL+
Sbjct: 52  KFTCFERDWLRTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALT 111

Query: 426 SPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           SPFWLWMVTWH+GLF+ L  GQIGFKGR + YF
Sbjct: 112 SPFWLWMVTWHLGLFLCLTFGQIGFKGRTEDYF 144


>tr|Q01L93|Q01L93_ORYSA OSIGBa0137L20.7 protein (H0622F05.3 protein)
           OS=Oryza sativa GN=OSIGBa0137L20.7 PE=4 SV=1
          Length = 142

 Score =  163 bits (412), Expect = 8e-39
 Identities = 73/105 (69%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
 Frame = +3

Query: 216 LTLSNVRSEARVTC--FARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGP 389
           L   N+    R+TC  F RDWLR DL+VIGFGLIGW+APSS+PAING SLTGLFF+SIG 
Sbjct: 36  LMTRNLERNGRITCMTFPRDWLRRDLNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQ 95

Query: 390 ELAHWPTGPALSSPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           EL+H+P+ PAL SPFWLW+VTWH+GLF+ L  GQIGFKGR +GYF
Sbjct: 96  ELSHFPSPPALDSPFWLWLVTWHLGLFLALTFGQIGFKGRTEGYF 140


>tr|A2XT95|A2XT95_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15832 PE=4 SV=1
          Length = 142

 Score =  163 bits (412), Expect = 8e-39
 Identities = 73/105 (69%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
 Frame = +3

Query: 216 LTLSNVRSEARVTC--FARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGP 389
           L   N+    R+TC  F RDWLR DL+VIGFGLIGW+APSS+PAING SLTGLFF+SIG 
Sbjct: 36  LMTRNLERNGRITCMTFPRDWLRRDLNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQ 95

Query: 390 ELAHWPTGPALSSPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           EL+H+P+ PAL SPFWLW+VTWH+GLF+ L  GQIGFKGR +GYF
Sbjct: 96  ELSHFPSPPALDSPFWLWLVTWHLGLFLALTFGQIGFKGRTEGYF 140


>tr|Q949Q5|Q949Q5_ARATH Putative uncharacterized protein At1g08380
           (Putative 16kDa membrane protein) (Photosystem I subunit
           O) OS=Arabidopsis thaliana GN=psaO PE=2 SV=1
          Length = 140

 Score =  162 bits (411), Expect = 1e-38
 Identities = 73/96 (76%), Positives = 84/96 (87%)
 Frame = +3

Query: 237 SEARVTCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGP 416
           S  RVTCF R+WLR DL+V+GFGLIGWLAPSSIPAING+SLTGLFF+SIG ELAH+PT P
Sbjct: 45  SGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPP 104

Query: 417 ALSSPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           AL+S FWLW+VTWH+GLF+ L  GQIGFKGR + YF
Sbjct: 105 ALTSQFWLWLVTWHLGLFLCLTFGQIGFKGRTEDYF 140


>tr|Q8L7C3|Q8L7C3_ARATH Expressed protein OS=Arabidopsis thaliana
           GN=At1g08380 PE=2 SV=1
          Length = 140

 Score =  162 bits (411), Expect = 1e-38
 Identities = 73/96 (76%), Positives = 84/96 (87%)
 Frame = +3

Query: 237 SEARVTCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGP 416
           S  RVTCF R+WLR DL+V+GFGLIGWLAPSSIPAING+SLTGLFF+SIG ELAH+PT P
Sbjct: 45  SGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPP 104

Query: 417 ALSSPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           AL+S FWLW+VTWH+GLF+ L  GQIGFKGR + YF
Sbjct: 105 ALTSQFWLWLVTWHLGLFLCLTFGQIGFKGRTEDYF 140


>tr|Q7XTG4|Q7XTG4_ORYSJ Os04g0414700 protein OS=Oryza sativa subsp.
           japonica GN=OJ991214_12.3 PE=2 SV=1
          Length = 142

 Score =  161 bits (408), Expect = 2e-38
 Identities = 72/105 (68%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
 Frame = +3

Query: 216 LTLSNVRSEARVTC--FARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGP 389
           L   N+    R+TC  F +DWLR DL+VIGFGLIGW+APSS+PAING SLTGLFF+SIG 
Sbjct: 36  LLTRNLERNGRITCMTFPQDWLRRDLNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQ 95

Query: 390 ELAHWPTGPALSSPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           EL+H+P+ PAL SPFWLW+VTWH+GLF+ L  GQIGFKGR +GYF
Sbjct: 96  ELSHFPSPPALDSPFWLWLVTWHLGLFLALTFGQIGFKGRTEGYF 140


>tr|B7FN10|B7FN10_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 138

 Score =  161 bits (408), Expect = 2e-38
 Identities = 72/93 (77%), Positives = 82/93 (88%)
 Frame = +3

Query: 246 RVTCFARDWLRTDLSVIGFGLIGWLAPSSIPAINGQSLTGLFFNSIGPELAHWPTGPALS 425
           RVTCF RDWLR D +VIGFGLIGWLAPSSIPAI+G+SLTGLFF+SIG ELAH+PT PAL+
Sbjct: 44  RVTCFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALT 103

Query: 426 SPFWLWMVTWHIGLFIVLLLGQIGFKGRKDGYF 524
           SPFWLW++ WH+GLFI L  GQIGFKGR + YF
Sbjct: 104 SPFWLWLICWHLGLFISLTFGQIGFKGRTEDYF 136


>tr|B6SR19|B6SR19_MAIZE 16kDa membrane protein OS=Zea mays PE=2 SV=1
          Length = 144

 Score =  161 bits (407), Expect = 3e-38
 Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
 Frame = +3

Query: 159 SSVSLTTPFLRGXXXXXXXLTLS-NVRSEARVTC--FARDWLRTDLSVIGFGLIGWLAPS 329
           S  + +T F RG         +S N+    R+TC  F RDWLR DLSVIGFGLIGW+ PS
Sbjct: 18  SRPAFSTSFTRGSRVSARNPLMSRNLERNGRITCMTFPRDWLRRDLSVIGFGLIGWMGPS 77

Query: 330 SIPAINGQSLTGLFFNSIGPELAHWPTGPALSSPFWLWMVTWHIGLFIVLLLGQIGFKGR 509
           S+PAING SLTGLFF+SIG ELAH+PT P ++S FWLW+VTWH+GLFIVL  GQIGFKGR
Sbjct: 78  SVPAINGNSLTGLFFSSIGQELAHFPTPPPVTSQFWLWLVTWHLGLFIVLTFGQIGFKGR 137

Query: 510 KDGYF 524
            + YF
Sbjct: 138 TEDYF 142