NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945296
Clone id YMU02A01NGRL0008_N20
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGACAACGCTAGTAAGCAAAAGATGCCAGCGAAACTAAAAGTTCAGCAATGGAGATAGGT
TAGACGCAGAGCCGCTCAGTCCTTCACCCTGGCGAGGCCATGTCCTTCCCCGGCTTCCCA
GGAGCTTCTCTCGCTCATCATGCCCAGACACAACAGCTCAATGCATGGATCACCCCACCC
TCATCTCTTCTGTGTGACAATGCATTGCTGCCCTCCCTGCCCCAATGCCCCCCATTCTAC
TCGAAGCTTTTTCCTGTGAACAAGCTGAGCGTATTCATCAAGCATACCTTCTTCAACAAA
CTTCCAACCCTCTTCAGCATGACGGGCAAGCTTCTGTCCCTGGAACATCAAGACCACTTT
CGAGCCCTGGTGAAGGCTGTCAGGGACCCAACCCCGCGAGTTCCGCTCCGGTCTTCAACA
CCAACTGCCAAAGCCATCCTCAAGCAGCTGAGTGCAGCAACTAGGGAGATAGAAAAACTT
TCCATTGCTGAGTGCAGAATCTACCGGAAGAAGCACAAGATGCTGGACACTTCGGGTGAT
TTTTTTCAGCGTGCTTGAGTTGATGAGGAGCTGTGCTACATGAGAGACATCATGGAGGAA
GAGATTCAGGAAGATGTGAACTC
■■Homology search results ■■ -
sp_hit_id Q6MG49
Definition sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 OS=Rattus norvegicus
Align length 61
Score (bit) 34.3
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945296|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N20, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 OS=Rattus nor...    34   0.53 
sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 OS=Mus musc...    34   0.69 
sp|Q92I58|MURG_RICCN UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    33   1.2  
sp|Q8XVE4|UNG_RALSO Uracil-DNA glycosylase OS=Ralstonia solanace...    33   1.5  
sp|Q82T88|GLGC_NITEU Glucose-1-phosphate adenylyltransferase OS=...    32   2.0  
sp|Q9HCM7|AUT2L_HUMAN AUTS2-like protein OS=Homo sapiens GN=AUTS...    32   3.4  
sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schiz...    31   4.5  
sp|Q8R1S4|MTSS1_MOUSE Metastasis suppressor protein 1 OS=Mus mus...    31   4.5  
sp|O43312|MTSS1_HUMAN Metastasis suppressor protein 1 OS=Homo sa...    31   4.5  
sp|Q03252|LMNB2_HUMAN Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=3      31   4.5  
sp|P22022|WETA_EMENI Regulatory protein wetA OS=Emericella nidul...    31   5.9  
sp|O75916|RGS9_HUMAN Regulator of G-protein signaling 9 OS=Homo ...    31   5.9  
sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 OS=Homo sap...    31   5.9  
sp|A9KN01|GPMA_CLOPH 2,3-bisphosphoglycerate-dependent phosphogl...    30   7.7  

>sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 OS=Rattus
           norvegicus GN=Bat3 PE=1 SV=1
          Length = 1096

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = +3

Query: 288 LLQQTSNPLQHDGQASVPGTSR------PLSSPGEGCQGPNPASSAPVFNTNCQSHPQAA 449
           L  QTS P++ +     P  S       P  +P     GP PA  AP   TN  +HP  A
Sbjct: 210 LNSQTSEPVESEAPPREPMESEEMEERPPTQTPELPPSGPAPAGPAPAPETNAPNHPSPA 269

Query: 450 E 452
           E
Sbjct: 270 E 270


>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 OS=Mus
           musculus GN=Bat3 PE=1 SV=1
          Length = 1154

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 309 PLQHDGQASVPGTSRPLSSP-GEGCQGPNPASSAPVFNTNCQSHPQAAE 452
           P++ +     P T  P  +P G    GP PA  AP   TN  +HP  AE
Sbjct: 228 PMESEEMEERPPTQTPELAPSGPAPAGPAPAGPAPAPETNAPNHPSPAE 276


>sp|Q92I58|MURG_RICCN
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Rickettsia conorii GN=murG PE=3 SV=1
          Length = 376

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -3

Query: 558 SSTLKKITRSVQHLVLLPVDSALSNGKFFYLPSCCTQLLEDGFGSWC*RPERNSRGWVPD 379
           +ST++++T      + +P+ SA  N +++       QLLED    WC      S G + D
Sbjct: 284 ASTIEELTYIGLPAIFIPLPSAADNHQYYN-----AQLLEDEKTGWCLEQNNISAGKLAD 338

Query: 378 SLHQ--GSKVVLMFQGQKLARHAEEGWKFV 295
            + +   +  +L    Q L +  +EG K +
Sbjct: 339 KILELISNPKILEDASQNLLKRRKEGHKLL 368


>sp|Q8XVE4|UNG_RALSO Uracil-DNA glycosylase OS=Ralstonia
           solanacearum GN=ung PE=3 SV=1
          Length = 266

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -3

Query: 402 NSRGWVPDSLHQGSKVVLMFQGQKLARHAEEGWKFVEEGMLDEYAQLVHRKKLRVEWGAL 223
           N  GW    +   + V+ + QGQ  A HA  GW+ + + +L+  A++ H +   + WG+ 
Sbjct: 151 NLEGWAQQGVLLLNTVLTVEQGQA-ASHARRGWERITDCLLEHLARVGHARVFML-WGSH 208

Query: 222 GQ 217
            Q
Sbjct: 209 AQ 210


>sp|Q82T88|GLGC_NITEU Glucose-1-phosphate adenylyltransferase
           OS=Nitrosomonas europaea GN=glgC PE=3 SV=1
          Length = 433

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 357 VVLMFQGQKLARHAEEGWKFVEEGMLDEYAQLVHRKKLRVEWGALGQG 214
           VV  ++ Q L RH + GW F+ +G   E+ +L+  ++ R E G   QG
Sbjct: 74  VVTQYKAQSLIRHIQRGWSFL-DGRFQEFIELLPAQQ-RTEEGTWYQG 119


>sp|Q9HCM7|AUT2L_HUMAN AUTS2-like protein OS=Homo sapiens GN=AUTS2L
           PE=2 SV=3
          Length = 972

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 131 SLIMPRHNSSMHGSPHPHLFCVTMHCCPPCPNAP 232
           S+  P+  SS+HG P PH     +H  PP   AP
Sbjct: 640 SIFAPKEGSSVHGLPSPHEAWNRLHRAPPSFPAP 673


>sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c
           OS=Schizosaccharomyces pombe GN=SPAPB18E9.04c PE=2 SV=1
          Length = 800

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 300 TSNPLQHDG---QASVPGTSRPLSSPGEGCQGPNPASSAPVFNTNC 428
           TS PL         SVP TS P++S         P +S PV  TNC
Sbjct: 487 TSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNC 532



 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +3

Query: 300 TSNPLQHDG---QASVPGTSRPLSSPGEGCQGPNPASSAPVFNTNC 428
           TS PL         SVP TS P++S         P +S PV  TNC
Sbjct: 546 TSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNC 591


>sp|Q8R1S4|MTSS1_MOUSE Metastasis suppressor protein 1 OS=Mus
           musculus GN=Mtss1 PE=1 SV=1
          Length = 759

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = -1

Query: 497 LHSAMESFSISLVAALSCLRMALAVGVEDRSGTRGVGSLTAFTRARKWS*CSRDRSLPVM 318
           L S + +  ++  A L   +    +    R GTR +GS  A TR      C R RS+   
Sbjct: 40  LQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGS--ALTRM-----CMRHRSIEAK 92

Query: 317 LKRVGSLLKKVCLMNTL 267
           L++  S L   CL+N L
Sbjct: 93  LRQFSSALID-CLINPL 108


>sp|O43312|MTSS1_HUMAN Metastasis suppressor protein 1 OS=Homo
           sapiens GN=MTSS1 PE=1 SV=2
          Length = 755

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = -1

Query: 497 LHSAMESFSISLVAALSCLRMALAVGVEDRSGTRGVGSLTAFTRARKWS*CSRDRSLPVM 318
           L S + +  ++  A L   +    +    R GTR +GS  A TR      C R RS+   
Sbjct: 40  LQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGS--ALTRM-----CMRHRSIEAK 92

Query: 317 LKRVGSLLKKVCLMNTL 267
           L++  S L   CL+N L
Sbjct: 93  LRQFSSALID-CLINPL 108


>sp|Q03252|LMNB2_HUMAN Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=3
          Length = 600

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +1

Query: 397 RVPLRSSTPTAKAILKQLSAATREIEKLSIAECRIYRKKHKMLDTSGDFFQRA*VDEELC 576
           R+ L S +     + KQ SAA   I +L  A      K  KMLD           ++E+ 
Sbjct: 291 RMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAK---------EQEMT 341

Query: 577 YMRDIMEEEIQE 612
            MRD+M++++ E
Sbjct: 342 EMRDVMQQQLAE 353
tr_hit_id Q9VI93
Definition tr|Q9VI93|Q9VI93_DROME Rotund, isoform E OS=Drosophila melanogaster
Align length 50
Score (bit) 37.0
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945296|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N20, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VI93|Q9VI93_DROME Rotund, isoform E OS=Drosophila melanogas...    37   0.95 
tr|Q8WRV3|Q8WRV3_DROME Rotund OS=Drosophila melanogaster GN=rn P...    37   0.95 
tr|Q4V6Z5|Q4V6Z5_DROME IP01358p OS=Drosophila melanogaster GN=rn...    37   0.95 
tr|B4QZL5|B4QZL5_DROSI GD19488 OS=Drosophila simulans GN=GD19488...    37   0.95 
tr|B4I4S3|B4I4S3_DROSE GM10489 OS=Drosophila sechellia GN=GM1048...    37   0.95 
tr|B4PRY2|B4PRY2_DROYA GE25797 OS=Drosophila yakuba GN=GE25797 P...    36   1.6  
tr|B4IUS7|B4IUS7_DROYA GE11134 OS=Drosophila yakuba GN=GE11134 P...    36   1.6  
tr|B3P2W0|B3P2W0_DROER GG25249 OS=Drosophila erecta GN=GG25249 P...    36   1.6  
tr|B2UDL1|B2UDL1_RALPJ Uracil-DNA glycosylase OS=Ralstonia picke...    36   2.1  
tr|A7CHL5|A7CHL5_BURPI Uracil-DNA glycosylase OS=Ralstonia picke...    36   2.1  
tr|B7G7E5|B7G7E5_PHATR Predicted protein OS=Phaeodactylum tricor...    35   2.8  
tr|A6EHY0|A6EHY0_9SPHI Putative TonB-linked outer membrane recep...    35   4.7  
tr|Q66S18|Q66S18_OIKDI Putative uncharacterized protein OS=Oikop...    35   4.7  
tr|Q6NTJ1|Q6NTJ1_XENLA MGC68493 protein OS=Xenopus laevis GN=tfa...    34   6.2  
tr|Q498N5|Q498N5_RAT HLA-B-associated transcript 3 OS=Rattus nor...    34   6.2  
tr|Q0CRE8|Q0CRE8_ASPTN Putative uncharacterized protein OS=Asper...    34   6.2  
tr|B1YYF7|B1YYF7_BURA4 Putative uncharacterized protein OS=Burkh...    26   6.4  
tr|Q8HWH4|Q8HWH4_MOUSE Bat3 protein (Fragment) OS=Mus musculus G...    34   8.0  
tr|Q3UF95|Q3UF95_MOUSE Putative uncharacterized protein OS=Mus m...    34   8.0  
tr|Q3TDL4|Q3TDL4_MOUSE Putative uncharacterized protein (Fragmen...    34   8.0  
tr|B6P876|B6P876_BRAFL Putative uncharacterized protein OS=Branc...    34   8.0  

>tr|Q9VI93|Q9VI93_DROME Rotund, isoform E OS=Drosophila melanogaster
           GN=rn PE=2 SV=2
          Length = 946

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPAS---SAPVFNTNCQSHPQAAECS 458
           HDG    P T  P ++P   C GP P S   S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESS 95


>tr|Q8WRV3|Q8WRV3_DROME Rotund OS=Drosophila melanogaster GN=rn PE=2
           SV=1
          Length = 943

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPAS---SAPVFNTNCQSHPQAAECS 458
           HDG    P T  P ++P   C GP P S   S PV +T  Q  P   E S
Sbjct: 44  HDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESS 93


>tr|Q4V6Z5|Q4V6Z5_DROME IP01358p OS=Drosophila melanogaster GN=rn
           PE=2 SV=1
          Length = 542

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPAS---SAPVFNTNCQSHPQAAECS 458
           HDG    P T  P ++P   C GP P S   S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESS 95


>tr|B4QZL5|B4QZL5_DROSI GD19488 OS=Drosophila simulans GN=GD19488
           PE=4 SV=1
          Length = 943

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPAS---SAPVFNTNCQSHPQAAECS 458
           HDG    P T  P ++P   C GP P S   S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESS 95


>tr|B4I4S3|B4I4S3_DROSE GM10489 OS=Drosophila sechellia GN=GM10489
           PE=4 SV=1
          Length = 509

 Score = 37.0 bits (84), Expect = 0.95
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPAS---SAPVFNTNCQSHPQAAECS 458
           HDG    P T  P ++P   C GP P S   S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESS 95


>tr|B4PRY2|B4PRY2_DROYA GE25797 OS=Drosophila yakuba GN=GE25797 PE=4
           SV=1
          Length = 943

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPASSAPVFNTNCQSHPQAAECS 458
           HDG    P T  P  +P   C GP P  S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCPAPPTSCNGPVPV-SIPVCHTGGQGSPVIVESS 91


>tr|B4IUS7|B4IUS7_DROYA GE11134 OS=Drosophila yakuba GN=GE11134 PE=4
           SV=1
          Length = 367

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPASSAPVFNTNCQSHPQAAECS 458
           HDG    P T  P  +P   C GP P  S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCPAPPTSCNGPVPV-SIPVCHTGGQGSPVIVESS 91


>tr|B3P2W0|B3P2W0_DROER GG25249 OS=Drosophila erecta GN=GG25249 PE=4
           SV=1
          Length = 941

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 HDGQASVPGTSRPLSSPGEGCQGPNPASSAPVFNTNCQSHPQAAECS 458
           HDG    P T  P  +P   C GP P  S PV +T  Q  P   E S
Sbjct: 46  HDGHVQGPATPTPCPAPPTSCNGPVPV-SIPVCHTGGQGSPVIVESS 91


>tr|B2UDL1|B2UDL1_RALPJ Uracil-DNA glycosylase OS=Ralstonia
           pickettii (strain 12J) GN=Rpic_3129 PE=4 SV=1
          Length = 263

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -3

Query: 444 LEDGFGSWC*RPERNSRGWVPDSLHQGSKVVLMFQGQKLARHAEEGWKFVEEGMLDEYAQ 265
           +E  FG        N  GW    +   + V+ + QGQ  A HA+ GW+ + + +L++ A+
Sbjct: 134 IEAEFGCKLPGTSGNLEGWAQQGVLLLNTVLTVEQGQA-ASHAKRGWERITDCLLEQLAR 192

Query: 264 LVHRKKLRVEWGALGQ 217
           + H K++ + WG+  Q
Sbjct: 193 VGH-KRVFMLWGSHAQ 207


>tr|A7CHL5|A7CHL5_BURPI Uracil-DNA glycosylase OS=Ralstonia
           pickettii 12D GN=Rpic12DDRAFT_1962 PE=3 SV=1
          Length = 263

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -3

Query: 444 LEDGFGSWC*RPERNSRGWVPDSLHQGSKVVLMFQGQKLARHAEEGWKFVEEGMLDEYAQ 265
           +E  FG        N  GW    +   + V+ + QGQ  A HA+ GW+ + + +L++ A+
Sbjct: 134 IEAEFGCKLPGASGNLEGWAQQGVLLLNTVLTVEQGQA-ASHAKRGWERITDCLLEQLAR 192

Query: 264 LVHRKKLRVEWGALGQ 217
           + H K++ + WG+  Q
Sbjct: 193 VGH-KRVFMLWGSHAQ 207