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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945320
Clone id YMU02A01NGRL0008_O23
Library
Length 182
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_O23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACGCCTCTTTTTCCCTCCATTCCATCAAATGAAGTCTATTTCTGCGAAGGTATTATCATT
GCCCTCGGCAAAGAGATGGAACAGAGACACTTGGAGAGCGCAGTACGACGGGGAGTTGTA
TGCTGCGTTCGGGAAGGATGAGTCGCCTCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
■■Homology search results ■■ -
sp_hit_id A6NNA5
Definition sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens
Align length 19
Score (bit) 28.9
E-value 8.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945320|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_O23, 5'
         (152 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Hom...    29   8.5  

>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo
           sapiens GN=DRGX PE=2 SV=1
          Length = 263

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 51  YYHCPRQRDGTETLGERST 107
           Y+HCP Q +GT T G  S+
Sbjct: 3   YFHCPPQLEGTATFGNHSS 21
tr_hit_id Q3HKA5
Definition tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicotiana tabacum
Align length 27
Score (bit) 46.2
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945320|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_O23, 5'
         (152 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein OS=Nicot...    46   8e-04
tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein OS=Nicot...    46   8e-04
tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein OS=Nicot...    46   8e-04
tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, who...    46   8e-04
tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spina...    44   0.003
tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Popul...    44   0.004

>tr|Q3HKA5|Q3HKA5_TOBAC Putative uncharacterized protein
           OS=Nicotiana tabacum PE=4 SV=1
          Length = 71

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 66  RQRDGTETLGERSTTGSCMLRSGRMSR 146
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q3C1P2|Q3C1P2_NICSY Putative uncharacterized protein
           OS=Nicotiana sylvestris PE=4 SV=1
          Length = 71

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 66  RQRDGTETLGERSTTGSCMLRSGRMSR 146
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q33BX8|Q33BX8_NICTO Putative uncharacterized protein
           OS=Nicotiana tomentosiformis PE=4 SV=1
          Length = 71

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 66  RQRDGTETLGERSTTGSCMLRSGRMSR 146
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|A7QL08|A7QL08_VITVI Chromosome undetermined scaffold_116, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001371001 PE=4 SV=1
          Length = 73

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 66  RQRDGTETLGERSTTGSCMLRSGRMSR 146
           R++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTTESCMLRSGRMNR 65


>tr|Q9LD88|Q9LD88_SPIOL Putative uncharacterized protein OS=Spinacia
           oleracea PE=4 SV=1
          Length = 72

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +3

Query: 69  QRDGTETLGERSTTGSCMLRSGRMSR 146
           ++ GT TLGERSTT SCMLRSGRM+R
Sbjct: 41  KKGGTSTLGERSTTESCMLRSGRMNR 66


>tr|A4GYW1|A4GYW1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa GN=Poptr_cp074 PE=4 SV=1
          Length = 71

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +3

Query: 66  RQRDGTETLGERSTTGSCMLRSGRMSR 146
           R++ GT TLGERST  SCMLRSGRM+R
Sbjct: 39  RKKGGTSTLGERSTPESCMLRSGRMNR 65