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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945323
Clone id YMU02A01NGRL0008_P04
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_P04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGAGAGTCCTTTTCAACGCGTACAGCTTTTTGCGCCTACTGTGTTGCTCACAACCTACT
GAGAACTTGCCAATTGGTGCTGCGAACAGTAGTGTGTGCTTGTATAAGAGGAGGTGGTCG
CCTCTTTCTCTCTCCATCTAAGTCTGCCTCTTTGTCTCCATTTGAATGCGTGAGAGCATC
TTGAGTGTCACTGTTGATGGCCTGCAACCGGGACAATTGTTGTTCGTGTGCTGGCAAAGC
GGAAGAATTGTGCATCAGCAATGGTGATTCTCTCGGAGCTGAGAGCATGGACTTCGAAGG
GGGTGAGCTCCATTGAAGGTTTTCTTTTATTTGATGCTTTGTAAACCTATTCTGGCGAAG
TATTCGAGCATCTCTGTGTCGAAATTGCGGATCTGATGTGCTTCATTCCTAGCAAGAAAC
GATATAATATCTGTATCGTTGATGTAATTTTTGGTGCTATGATGTTGGTTTTACTCGGCG
CGTTGTTGGTGTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8CIN9
Definition sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus
Align length 65
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945323|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P04, 5'
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    32   2.1  
sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=n...    31   2.8  
sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage...    30   4.7  
sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS...    30   6.1  
sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe gr...    30   7.9  
sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus mus...    30   7.9  
sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5 ...    30   8.0  

>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus
           norvegicus GN=Rffl PE=1 SV=1
          Length = 362

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 303 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 124
           P  ++ L+ P+ S +    S  LP+   Q++ + A + +TQ A+ H + D E  +  E  
Sbjct: 156 PEQQAFLTQPQSSTV-PPTSPGLPSSPAQVTSVLAQDQETQQAIGHVSQDHEEPIFLEST 214

Query: 123 RRPPP 109
            R PP
Sbjct: 215 ARVPP 219


>sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=ninE
           PE=3 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 346 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTR 224
           +YK  N+RK   EL P E+  L     ++ D ++ R A+ R
Sbjct: 13  IYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARR 53


>sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage
           DLP12 OS=Escherichia coli (strain K12) GN=ninE PE=3 SV=1
          Length = 56

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 346 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTRT 221
           +Y+  N+RK   EL P E+  L     ++ D ++ R A+ R+
Sbjct: 13  IYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRS 54


>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase
           OS=Desulfotalea psychrophila GN=pnp PE=3 SV=1
          Length = 692

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 113 GGRLFLSPSKSASLSPFECVRAS*VSLLMACNRDNCCSCAGKAEELCISNGDSLGAESMD 292
           GGR+     K      F  + +S + L++AC R+      GKA+EL  S  + LGA    
Sbjct: 150 GGRIAYIDGKYVLNPTFAELESSSMDLMVACTRNAIVMVEGKADEL--SEDEILGAIFFA 207

Query: 293 FE 298
           FE
Sbjct: 208 FE 209


>sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe
           grisea GN=RTT106 PE=3 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 366 EHLCVEIADLMCFIPSKKRYNICI 437
           E L +EI D+   IP +K+YN+C+
Sbjct: 92  EELQLEIKDISVSIPQRKKYNLCL 115


>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus
           musculus GN=Rasa2 PE=1 SV=1
          Length = 848

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 236 CQHTNNNCPGCRPSTVTLKMLSRIQMETKRQT 141
           CQ T+ + PGC+P T  +    +I ++  R+T
Sbjct: 727 CQETSESTPGCKPCTAGIPADIQIDIDEDRET 758


>sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5
           OS=Mus musculus GN=Agbl5 PE=2 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 312 WSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDG 133
           +S+  S    S+ +++   M NS + P H  + + L  + S TQ       G        
Sbjct: 671 FSTGTSTGGSSSSQQNSPQMKNSPSFPFHGSRTAGLPGLGSSTQKVSHRVLGPVREPRCS 730

Query: 132 ERKRRPPPLIQAHTT 88
           +R+RR  PL    TT
Sbjct: 731 DRRRRQQPLNHRSTT 745
tr_hit_id B0CPT8
Definition tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 117
Score (bit) 39.7
E-value 0.08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945323|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P04, 5'
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    40   0.080
tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (st...    38   0.30 
tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    37   0.68 
tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein OS=Trich...    36   0.88 
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   1.5  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   2.6  
tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative unchara...    34   3.4  
tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subs...    34   3.4  
tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by t...    34   3.4  
tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein OS=Talar...    34   3.4  
tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein OS=Leish...    34   4.4  
tr|B6QUH3|B6QUH3_PENMA BZIP transcription factor, putative OS=Pe...    34   4.4  
tr|A2R8I4|A2R8I4_ASPNC Contig An16c0230, complete genome OS=Aspe...    34   4.4  
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...    33   5.7  
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.7  
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.7  
tr|Q6H593|Q6H593_ORYSJ Os09g0386200 protein OS=Oryza sativa subs...    33   7.3  
tr|B8BF24|B8BF24_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.3  
tr|A9RSV2|A9RSV2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.5  
tr|Q55DD7|Q55DD7_DICDI Putative uncharacterized protein OS=Dicty...    33   7.5  
tr|B6KMK8|B6KMK8_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.5  
tr|B7JVS3|B7JVS3_SYNP8 Putative signal transduction protein with...    33   9.5  
tr|B4BVW0|B4BVW0_9CHRO Putative signal transduction protein with...    33   9.5  
tr|Q570Z6|Q570Z6_MOUSE MKIAA4127 protein (Fragment) OS=Mus muscu...    33   9.8  
tr|B5DFK5|B5DFK5_RAT Hip1r protein (RCG21182, isoform CRA_b) OS=...    33   9.8  
tr|B2KF50|B2KF50_MOUSE UHRF1 (ICBP90) binding protein 1 OS=Mus m...    33   9.8  
tr|B0KS50|B0KS50_PSEPG Amino acid adenylation domain protein OS=...    33   9.8  
tr|A4F9B5|A4F9B5_SACEN Alpha-L-fucosidase OS=Saccharopolyspora e...    33   9.8  
tr|A9HKD8|A9HKD8_9RHOB Dehydrogenase, putative OS=Roseobacter li...    33   9.8  
tr|A4RTX8|A4RTX8_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   9.8  

>tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_186956 PE=4 SV=1
          Length = 940

 Score = 39.7 bits (91), Expect = 0.080
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
 Frame = -2

Query: 339 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLS----RLQAINSDTQDAL 172
           +H +   LQ  +    ++ S   +  LL +    +P    ++S    RL   + DT+D  
Sbjct: 557 RHVLDSELQQRACEFFALASRSDDDELLQNICEEMPPFPPRVSALLGRLNRKHGDTEDKR 616

Query: 171 THSNGDKEADLDGERKRRPPPLIQAHTTVRSTNWQVLSRL*ATQ*AQKAVRVEKDSP 1
           T  +G KEA+LD E  +R   L++ + T  S N  ++  L     +  +++    SP
Sbjct: 617 TWIHGGKEANLDREATKRKTFLVENNGTASSDNQGIMDSLAGLDMSSPSIQAIGSSP 673


>tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322427 PE=4 SV=1
          Length = 194

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
 Frame = -3

Query: 398 HQIRNFDTEMLEYFARIGLQSIK*KKTFNGAH---PLRSPCSQLRENHHC*C-TILPLCQ 231
           H++R  + E L  F        + K+  N AH   PLR   SQ    HH  C T +    
Sbjct: 79  HRLRRQEGEALFGFKA----KARDKQLVNNAHRRNPLRHKASQAPLPHHAMCETSMNRSD 134

Query: 230 HTNNNCPGCRPSTVTLKMLSRIQMETKRQT*MERERGDHLLLYKHTLLFAAPIGKFSVGC 51
               NC GC      L  L R    + RQT +  E G H+L  +     ++P G  S G 
Sbjct: 135 RRERNCCGC----ARLLGLPR----SPRQTLVNPEEGSHILWRREHYAGSSPFGLTSSGH 186

Query: 50  EQHSRR 33
             H  R
Sbjct: 187 RTHFTR 192


>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 36.6 bits (83), Expect = 0.68
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 303  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINS-DTQDALTHSNGDKEADLDGER 127
            PPS S+ S PR SP L  +SS+ PA ++    LQAI++ D+ D      GD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 126  KRRPPP 109
                 P
Sbjct: 1238 TAEQEP 1243


>tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_067550 PE=4 SV=1
          Length = 398

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -2

Query: 303 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 124
           P S S  S+PR+S    H SSA P++ + L      N D  D  + S+ DK     G  K
Sbjct: 74  PSSNSTPSSPRKSSA-KHRSSARPSNAKPLISDSKDNDDESD--SESSEDKSRPKTGGGK 130

Query: 123 RRPPPLIQAHTTVR 82
           R+P  +++  T ++
Sbjct: 131 RKPKKIVKKTTVIK 144


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 288  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGE 130
            +LS P  SP L+ N   LPA     SRL  ++    +A + ++GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -2

Query: 303 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 205
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OJ1200_C08.114 PE=4 SV=1
          Length = 860

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -2

Query: 333 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 169
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 73  QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 132

Query: 168 HSNGDKEADLDGERKRRPPP 109
           + +G++EA + GER+++  P
Sbjct: 133 YIDGEQEATILGERQKQNSP 152


>tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0686400 PE=4 SV=1
          Length = 926

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -2

Query: 333 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 169
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 139 QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 198

Query: 168 HSNGDKEADLDGERKRRPPP 109
           + +G++EA + GER+++  P
Sbjct: 199 YIDGEQEATILGERQKQNSP 218


>tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=M02G9.2
           PE=2 SV=3
          Length = 398

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = +2

Query: 95  CACIRGGGR-LFLSPSKSASLSPFECVRAS*VSLLMACNRDN----CCS-CAGKAEELCI 256
           C C  G  R +   PS  A   P+ CV     S L +CNR N    C S C+   E  C 
Sbjct: 65  CVCTEGNVRNIITGPSLPALFKPYNCVSTCESSCLESCNRLNFNMKCSSVCSEACEFTCA 124

Query: 257 SNGDS 271
             G S
Sbjct: 125 KQGTS 129


>tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_027460 PE=4
           SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = -2

Query: 339 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSN 160
           K +++E+L   SPP+ S L++P  + ++ H      AHE  LSR     +  +D     N
Sbjct: 27  KEKMEESLD--SPPTGSPLTSPIVTIVVGHERRLFAAHEDVLSRSAFFEAALKDQFLEPN 84

Query: 159 GDKEADLDGE 130
           G K+ DL  E
Sbjct: 85  G-KKVDLPDE 93