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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945331
Clone id YMU02A01NGRL0008_P12
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_P12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGATATACATGTGTGCGGAGGGATGATTAAAAGAGACGATGGATTACCTGCGCTGCCCCG
CACCTACATCTTCTCTGCTCTTGATTGCCTAGGCACGAGGTCCCGCAAGAAGAGATCTGA
TAAGGATAAAGGTTAATCGAAAGACCCAGAAGCGCAACAGCGGTTACTACCCCTCAGGTC
TGGACACCCGCCCCTGTCTCTGTTACCTCTAGGGCCTACTGCTAAGATTATGATGACGAC
AACGTTGCTCTCCCAGCCTTGCCACCCATTGTCGATCTACCTACACACCCTGCCCTTGAT
GCCTCAGATGAAGATTTGAGCCTCGATAGTGAATGAGATGACGAGATTGATGATGCTGAC
GACAAGATCAAACAGAATCAACCGGAGAATGAAGGTCTCGTGGACATTGGGGAAGTCTAT
GCCAGTGCCGATGTTGCTCCCGATGCTCT
■■Homology search results ■■ -
sp_hit_id A7KAM5
Definition sp|A7KAM5|ATG15_PENCH Putative lipase atg15 OS=Penicillium chrysogenum
Align length 53
Score (bit) 30.8
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945331|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P12, 5'
         (449 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7KAM5|ATG15_PENCH Putative lipase atg15 OS=Penicillium chrys...    31   2.8  
sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 O...    29   8.0  
sp|Q01306|CCG8_NEUCR Clock-controlled protein 8 OS=Neurospora cr...    29   8.0  

>sp|A7KAM5|ATG15_PENCH Putative lipase atg15 OS=Penicillium
           chrysogenum GN=atg15 PE=3 SV=1
          Length = 673

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 139 ERPRSATAVTTPQVWTPAPVSVTSRA-----YC*DYDDDNVALPALPPIVDLP 282
           + P S TAVT+   +T AP+S T  +      C D      A+ +LP I   P
Sbjct: 589 DEPTSTTAVTSLPAFTSAPISTTCHSPGIFWGCWDEPTSTTAVTSLPAITSTP 641


>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4
           OS=Mus musculus GN=Notch4 PE=1 SV=2
          Length = 1964

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 264 WQGWESNVVVIIILAVGPRGNRDRGGCPDLRGSNRC-CASG 145
           W+GW+ +  +    A GP   R+ G C +  GS  C C SG
Sbjct: 303 WKGWDCSEDIDECEARGPPRCRNGGTCQNTAGSFHCVCVSG 343


>sp|Q01306|CCG8_NEUCR Clock-controlled protein 8 OS=Neurospora
           crassa GN=ccg-8 PE=2 SV=3
          Length = 661

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -2

Query: 448 EHREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQ 290
           EH   HRH H  P   +  H          QHHQ      ++  + H  HQ Q
Sbjct: 2   EHHHHHRHMHS-PSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHHHQQQ 53
tr_hit_id Q55GE1
Definition tr|Q55GE1|Q55GE1_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 74
Score (bit) 37.0
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945331|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P12, 5'
         (449 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q55GE1|Q55GE1_DICDI Putative uncharacterized protein OS=Dicty...    37   0.50 
tr|B4HIP4|B4HIP4_DROSE GM23901 OS=Drosophila sechellia GN=GM2390...    37   0.65 
tr|A9SY71|A9SY71_PHYPA Predicted protein OS=Physcomitrella paten...    29   0.72 
tr|A9SV92|A9SV92_PHYPA Predicted protein OS=Physcomitrella paten...    28   1.6  
tr|B4QUN8|B4QUN8_DROSI GD18713 OS=Drosophila simulans GN=GD18713...    34   3.2  
tr|A7PEV1|A7PEV1_VITVI Chromosome chr11 scaffold_13, whole genom...    30   4.3  
tr|Q9I7K2|Q9I7K2_DROME CG4655 OS=Drosophila melanogaster GN=CG46...    33   7.2  
tr|B4PLD9|B4PLD9_DROYA GE26052 OS=Drosophila yakuba GN=GE26052 P...    33   7.2  
tr|B3GN10|B3GN10_DROME Cadherin OS=Drosophila melanogaster GN=Ca...    33   7.2  

>tr|Q55GE1|Q55GE1_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0216546 PE=4 SV=1
          Length = 1064

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = -2

Query: 448 EHREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQ 269
           +H+ QH+H H+  Q  +  H           HHQ +H    +  N H +HQ Q    ++Q
Sbjct: 743 QHQHQHQHQHQHHQHHQHQHHQ-------HHHHQHQHQNQNQNQNQHQQHQHQIYQPNQQ 795

Query: 268 WVARLGEQRCRHHN 227
            +  +  Q   HH+
Sbjct: 796 QIHHINHQLGMHHH 809


>tr|B4HIP4|B4HIP4_DROSE GM23901 OS=Drosophila sechellia GN=GM23901
           PE=4 SV=1
          Length = 502

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -2

Query: 445 HREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQW 266
           H  QH H HRL Q  R  H           HHQ +H  H++  + H   Q Q       W
Sbjct: 72  HHHQHHHHHRLKQHHRHHH----------HHHQHQHHHHHQQQHNHQNQQMQ-----HHW 116

Query: 265 VARLG 251
            +RLG
Sbjct: 117 PSRLG 121


>tr|A9SY71|A9SY71_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234439 PE=4 SV=1
          Length = 320

 Score = 29.3 bits (64), Expect(2) = 0.72
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 175 QVWTPAPVSVTSRAYC*DYDDDNVALPALPPIVDLPTHP 291
           Q W+   VSV S A C D +DD  A  A PP +D+   P
Sbjct: 58  QFWSATQVSVKSWADC-DDEDDYFATTAPPPDIDVAPVP 95



 Score = 26.9 bits (58), Expect(2) = 0.72
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 17 GGMIKRDDGLPALPRTYIFSALD 85
          G   K+ DGLPA+  T IF+AL+
Sbjct: 3  GSGSKKGDGLPAISSTNIFAALE 25


>tr|A9SV92|A9SV92_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_107057 PE=4 SV=1
          Length = 302

 Score = 28.5 bits (62), Expect(2) = 1.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 175 QVWTPAPVSVTSRAYC*DYDDDNVALPALPPIVDL 279
           Q W+   VSV S A C D +DD  A  A PP +D+
Sbjct: 58  QFWSATQVSVKSWADC-DDEDDYFATTAPPPDIDV 91



 Score = 26.6 bits (57), Expect(2) = 1.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 29 KRDDGLPALPRTYIFSALD 85
          K+ DGLPA+  T IF+AL+
Sbjct: 7  KKGDGLPAISSTNIFAALE 25


>tr|B4QUN8|B4QUN8_DROSI GD18713 OS=Drosophila simulans GN=GD18713
           PE=4 SV=1
          Length = 503

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = -2

Query: 445 HREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQW 266
           H  QH H HRL Q  R  H           HHQ +H  H      H  HQ Q   +   W
Sbjct: 72  HHHQHHHHHRLKQHHRHHH-----------HHQHQHQHHPHHQQQH-NHQNQQ--MQHHW 117

Query: 265 VARLG 251
            +R+G
Sbjct: 118 PSRVG 122


>tr|A7PEV1|A7PEV1_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016798001
           PE=4 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect(2) = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 148 RSATAVTTPQV-WTPAPVSVTSRAYC*DYDDDNVALPALPP 267
           + A +   PQV W P P++V S A   D DDD+      PP
Sbjct: 40  KKAESTEQPQVFWAPTPLTVKSWADVDDEDDDDYYATTAPP 80



 Score = 23.5 bits (49), Expect(2) = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 11 VCGGMIKRDDGLPALPRTYIFSALDCL 91
          + GG  +RDDG   +  T +F+AL  L
Sbjct: 1  MAGGGNRRDDGSLVINSTNVFAALGSL 27


>tr|Q9I7K2|Q9I7K2_DROME CG4655 OS=Drosophila melanogaster GN=CG4655
           PE=1 SV=1
          Length = 503

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -2

Query: 445 HREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQW 266
           H  QH H HRL Q  R  H           HH+ +H  H+       +H  Q   +   W
Sbjct: 72  HHHQHHHHHRLKQHHRHHH----------HHHRLQHHHHHH----QQQHNHQNQQMQHHW 117

Query: 265 VARLG 251
            +RLG
Sbjct: 118 PSRLG 122


>tr|B4PLD9|B4PLD9_DROYA GE26052 OS=Drosophila yakuba GN=GE26052 PE=4
           SV=1
          Length = 506

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -2

Query: 445 HREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQW 266
           H  QH H HRL                 +QHH+  H  H++    H  HQ Q   +   W
Sbjct: 81  HHHQHHHHHRL-----------------KQHHRHHHRHHHQHQQQH-NHQNQQ--MQHHW 120

Query: 265 VARLG 251
            +RLG
Sbjct: 121 PSRLG 125


>tr|B3GN10|B3GN10_DROME Cadherin OS=Drosophila melanogaster
           GN=Cad86C PE=2 SV=1
          Length = 1943

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -2

Query: 445 HREQHRHWHRLPQCPRDLHSPVDSV*SCRQHHQSRHLIHYRGSNLHLRHQGQGV*VDRQW 266
           H  QH H HRL Q  R  H           HH+ +H  H+       +H  Q   +   W
Sbjct: 56  HHHQHHHHHRLKQHHRHHH----------HHHRLQHHHHHH----QQQHNHQNQQMQHHW 101

Query: 265 VARLG 251
            +RLG
Sbjct: 102 PSRLG 106