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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945342
Clone id YMU02A01NGRL0008_P24
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_P24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCCCCGACTTTTTCATCAGCCTCGCCAATCACAACGAGTGGCACCCCAAATATACAGTTT
TTGCACATGTGCTACCTGCAGATATACCTTTAGTAGAGAAACTTGTCAGTCTTCCAACAA
CAACTTCTGTTTGGGAAGGGATAAGGGTTTCTGTATTGAATGAGTCTGTCAGTATACGAG
TTAAGAGGGTCTAGATTATTGAAACTTTCTCCTTTCAAAAAAGACAAGTCTCATTAACTT
GGTCTTGCTGGCATTAAAGAGGTACAGATTTGTAATATGTTCACTTCACTAACAGTCTTG
TAACATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5TCM9
Definition sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo sapiens
Align length 47
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945342|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P24, 5'
         (306 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo...    32   1.3  
sp|Q8IBG1|DYHC1_PLAF7 Dynein heavy chain-like protein MAL7P1.162...    31   2.2  
sp|A0Q060|MRAY_CLONN Phospho-N-acetylmuramoyl-pentapeptide-trans...    30   2.9  
sp|Q5EAW4|MCM10_XENLA Protein MCM10 homolog OS=Xenopus laevis GN...    30   3.8  
sp|P05106|ITB3_HUMAN Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE...    30   4.9  
sp|A3DE29|MRAY_CLOTH Phospho-N-acetylmuramoyl-pentapeptide-trans...    29   8.4  
sp|Q28E45|MCM10_XENTR Protein MCM10 homolog OS=Xenopus tropicali...    29   8.4  

>sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo
           sapiens GN=LCE5A PE=2 SV=1
          Length = 118

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 14  HQPRQSQRVAPQIYSFCTCATCRYTFSRETCQSSNNNFCLGRDKGFC 154
           H+PRQS R  PQ  S C   + + +     C SS  + C     G C
Sbjct: 72  HRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCHSSGGCC 118


>sp|Q8IBG1|DYHC1_PLAF7 Dynein heavy chain-like protein MAL7P1.162
            OS=Plasmodium falciparum (isolate 3D7) GN=MAL7P1.162 PE=2
            SV=1
          Length = 4971

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 166  LSVYELRGSRLLKLSPFKKDKSH*LGLAGIKEVQICNMFTSLTVL 300
            LSV+++R  R      F+ D  H +  AGIKE +I  +F    VL
Sbjct: 3140 LSVFQIRAGRNYTTESFEADLRHIMKRAGIKEEKITFIFDESNVL 3184


>sp|A0Q060|MRAY_CLONN
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Clostridium novyi (strain NT) GN=mraY PE=3 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 160 MSLSVYELRGSRLLKLSPFKKDKSH*LGLAGIKEVQICNMFTSLTVL 300
           + +  ++LRG R+ K+SP      H   L+G  E +I ++F+ +TV+
Sbjct: 266 LQVGSFKLRGKRIFKMSPI----HHHFELSGWHETKIVSIFSIITVI 308


>sp|Q5EAW4|MCM10_XENLA Protein MCM10 homolog OS=Xenopus laevis
           GN=mcm10 PE=1 SV=2
          Length = 860

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 32  QRVAPQIYSFCTCATCRYTF--SRETCQSSNNNF 127
           Q +  Q     TC TC+YT    +ETC S N++F
Sbjct: 756 QSIREQSCRVVTCKTCKYTHFKPKETCVSENHDF 789


>sp|P05106|ITB3_HUMAN Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE=1
           SV=2
          Length = 788

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 77  CRYTFSRETCQSSNNNFCLGRDKGFCIE*VC 169
           C  T   +TC SSN   C GR K  C   VC
Sbjct: 584 CNCTTRTDTCMSSNGLLCSGRGKCECGSCVC 614


>sp|A3DE29|MRAY_CLOTH
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Clostridium thermocellum (strain ATCC 27405 / DSM
           1237) GN=mraY PE=3 SV=1
          Length = 330

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 175 YELRGSRLLKLSPFKKDKSH*LGLAGIKEVQICNMFTSLTVL 300
           ++L G R+ K++P      H   L+G KEV++  +F ++TVL
Sbjct: 279 FKLTGKRVFKMAPIH----HHFELSGWKEVKVVLVFWTITVL 316


>sp|Q28E45|MCM10_XENTR Protein MCM10 homolog OS=Xenopus tropicalis
           GN=mcm10 PE=2 SV=1
          Length = 845

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 65  TCATCRYTF--SRETCQSSNNNF 127
           TC TC+YT    +ETC S N++F
Sbjct: 753 TCKTCKYTHFKPKETCVSENHDF 775
tr_hit_id A7PK74
Definition tr|A7PK74|A7PK74_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera
Align length 63
Score (bit) 77.4
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945342|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_P24, 5'
         (306 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PK74|A7PK74_VITVI Chromosome chr15 scaffold_19, whole genom...    77   3e-13
tr|A5BU58|A5BU58_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|Q93ZN3|Q93ZN3_ARATH AT4g17070/dl4565c OS=Arabidopsis thaliana...    76   7e-13
tr|O23551|O23551_ARATH Putative uncharacterized protein dl4565c ...    76   7e-13
tr|A7QZM3|A7QZM3_VITVI Chromosome undetermined scaffold_279, who...    75   2e-12
tr|A5BQG0|A5BQG0_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|B4FPR5|B4FPR5_MAIZE Putative uncharacterized protein OS=Zea m...    73   6e-12
tr|A9SNW9|A9SNW9_PHYPA Predicted protein (Fragment) OS=Physcomit...    72   2e-11
tr|A2Q1W0|A2Q1W0_MEDTR Peptidyl-prolyl cis-trans isomerase, cycl...    71   3e-11
tr|Q10T60|Q10T60_ORYSJ Os03g0100300 protein OS=Oryza sativa subs...    68   2e-10
tr|B8AKZ8|B8AKZ8_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A9TEC1|A9TEC1_PHYPA Predicted protein OS=Physcomitrella paten...    65   1e-09
tr|A3AD55|A3AD55_ORYSJ Putative uncharacterized protein OS=Oryza...    64   4e-09
tr|A4RUU5|A4RUU5_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   2.5  
tr|Q22KY3|Q22KY3_TETTH Neurohypophysial hormones, N-terminal Dom...    34   4.2  

>tr|A7PK74|A7PK74_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019047001
           PE=4 SV=1
          Length = 338

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 35/63 (55%), Positives = 43/63 (68%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANHNEW   YTVF  +LP D+ + EK+  LPT   VW  I VSVL+E + +R 
Sbjct: 263 PEFFISLANHNEWSQTYTVFGSLLPEDLEIAEKIAQLPTKLEVWSNIDVSVLDEPIRLRF 322

Query: 183 KRV 191
            RV
Sbjct: 323 IRV 325


>tr|A5BU58|A5BU58_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014467 PE=4 SV=1
          Length = 227

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 35/63 (55%), Positives = 43/63 (68%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANHNEW   YTVF  +LP D+ + EK+  LPT   VW  I VSVL+E + +R 
Sbjct: 152 PEFFISLANHNEWSQTYTVFGSLLPEDLEIAEKIAQLPTKLEVWSNIDVSVLDEPIRLRF 211

Query: 183 KRV 191
            RV
Sbjct: 212 IRV 214


>tr|Q93ZN3|Q93ZN3_ARATH AT4g17070/dl4565c OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 343

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANH+EW   YTVF  VLP D+ +VE +  LPT   VW  + VSVL + VS+ V
Sbjct: 270 PEFFISLANHHEWKQSYTVFGLVLPEDMDVVETIAGLPTRADVWNSVNVSVLEKPVSLTV 329

Query: 183 KRV 191
           +R+
Sbjct: 330 RRM 332


>tr|O23551|O23551_ARATH Putative uncharacterized protein dl4565c
           (Putative uncharacterized protein AT4g17070)
           OS=Arabidopsis thaliana GN=dl4565c PE=4 SV=1
          Length = 306

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANH+EW   YTVF  VLP D+ +VE +  LPT   VW  + VSVL + VS+ V
Sbjct: 233 PEFFISLANHHEWKQSYTVFGLVLPEDMDVVETIAGLPTRADVWNSVNVSVLEKPVSLTV 292

Query: 183 KRV 191
           +R+
Sbjct: 293 RRM 295


>tr|A7QZM3|A7QZM3_VITVI Chromosome undetermined scaffold_279, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010718001 PE=4 SV=1
          Length = 345

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANH EW   YTVF  VLP D+ + EK+  LPT   VW  I VSVL   + +R+
Sbjct: 267 PEFFISLANHQEWKKVYTVFGSVLPEDMEIAEKIAQLPTKLDVWNKINVSVLENPIPLRL 326

Query: 183 KRV 191
           +R+
Sbjct: 327 RRM 329


>tr|A5BQG0|A5BQG0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025993 PE=4 SV=1
          Length = 1050

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+FFISLANH EW   YTVF  VLP D+ + EK+  LPT   VW  I VSVL   + +R+
Sbjct: 221 PEFFISLANHQEWKKVYTVFGSVLPEDMEIAEKIAQLPTKLDVWNKINVSVLENPIPLRL 280

Query: 183 KRV 191
           +R+
Sbjct: 281 RRM 283


>tr|B4FPR5|B4FPR5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 330

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 31/62 (50%), Positives = 43/62 (69%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+F ISLA+H EW   YTVF +VLP D+ + E++  LPT+T VW  ++V VL + V  +V
Sbjct: 262 PEFLISLADHEEWRDAYTVFGNVLPMDMAIAEEMTLLPTSTDVWSNVKVKVLKDPVYFKV 321

Query: 183 KR 188
           KR
Sbjct: 322 KR 323


>tr|A9SNW9|A9SNW9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_16468 PE=4 SV=1
          Length = 193

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSI 176
           PDFFISLA+H EW  K++VFA V   DI L+E L  LPTTT+ WEG+ + VL++ V+I
Sbjct: 136 PDFFISLADHVEWPRKHSVFATVADDDISLIETLAELPTTTATWEGVPIQVLDKPVNI 193


>tr|A2Q1W0|A2Q1W0_MEDTR Peptidyl-prolyl cis-trans isomerase,
           cyclophilin type OS=Medicago truncatula
           GN=MtrDRAFT_AC149129g19v2 PE=4 SV=1
          Length = 327

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           PDFFISLANH EW   YTVF +VL  D+ ++EK+  L T + +W  I VS+L + + +R 
Sbjct: 263 PDFFISLANHKEWRDSYTVFGYVLSEDMEILEKISHLRTRSEIWSNIAVSLLKKPIFLRF 322

Query: 183 KRV 191
           +R+
Sbjct: 323 RRI 325


>tr|Q10T60|Q10T60_ORYSJ Os03g0100300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0100300 PE=4 SV=1
          Length = 331

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 30/62 (48%), Positives = 40/62 (64%)
 Frame = +3

Query: 3   PDFFISLANHNEWHPKYTVFAHVLPADIPLVEKLVSLPTTTSVWEGIRVSVLNESVSIRV 182
           P+F ISLANH EW   YTVF  V+P D+ + E++  L T+T VW  + V VL + V  +V
Sbjct: 263 PEFLISLANHGEWKGAYTVFGSVVPEDMAIAEEMALLSTSTDVWSNVTVKVLRDPVYFKV 322

Query: 183 KR 188
           KR
Sbjct: 323 KR 324