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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945344
Clone id YMU02A01NGRL0009_A03
Library
Length 355
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_A03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGCATAGATTGCAACAATGTTGGAACCAATGATATGAAGGAACAGAACGTGTTTGAGACC
CTGATAGGAAAGCAGCAGCAGTTTTTATTGGCCACTCAAGTTGTGAAAATGATTCTGAAA
ATCGATGATGTTATTACCCCTTCGAGTTTCTGAGACAGACACTCATGCATGTGCTTGAGC
ATGCCTATAATACTACACAAGCTTTACGGAGAGGTTTTTGATCGGTCATGTGCAAAAGCT
GCATTCTTGGTGGTGATACTTATTCCAGAGATGTACATCCTGAGGGTTGTTTTTTATGCC
AATTATGGAAGTATAGAGCTCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P54411
Definition sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa
Align length 50
Score (bit) 95.1
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945344|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A03, 5'
         (326 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Ave...    95   1e-19
sp|P40412|TCPE1_AVESA T-complex protein 1 subunit epsilon OS=Ave...    95   1e-19
sp|O04450|TCPE_ARATH T-complex protein 1 subunit epsilon OS=Arab...    89   7e-18
sp|Q54TD3|TCPE_DICDI T-complex protein 1 subunit epsilon OS=Dict...    72   9e-13
sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pong...    70   4e-12
sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Maca...    70   4e-12
sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo...    70   4e-12
sp|Q68FQ0|TCPE_RAT T-complex protein 1 subunit epsilon OS=Rattus...    65   1e-10
sp|P80316|TCPE_MOUSE T-complex protein 1 subunit epsilon OS=Mus ...    65   1e-10
sp|P47209|TCPE_CAEEL T-complex protein 1 subunit epsilon OS=Caen...    64   2e-10
sp|Q9UTM4|TCPE_SCHPO T-complex protein 1 subunit epsilon OS=Schi...    61   2e-09
sp|P40413|TCPE_YEAST T-complex protein 1 subunit epsilon OS=Sacc...    59   1e-08
sp|P78921|TCPQ_SCHPO Probable T-complex protein 1 subunit theta ...    42   7e-04
sp|O28821|THSB_ARCFU Thermosome subunit beta OS=Archaeoglobus fu...    41   0.002
sp|Q94757|TCPA_SCHMA T-complex protein 1 subunit alpha OS=Schist...    39   0.006
sp|P48424|THSA_THEAC Thermosome subunit alpha OS=Thermoplasma ac...    39   0.011
sp|P50016|THS_METKA Thermosome subunit OS=Methanopyrus kandleri ...    38   0.014
sp|O00782|TCPG_OXYGR T-complex protein 1 subunit gamma OS=Oxytri...    38   0.018
sp|Q4R5G2|TCPA_MACFA T-complex protein 1 subunit alpha OS=Macaca...    37   0.031
sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo s...    37   0.031
sp|O26885|THSB_METTH Thermosome subunit beta OS=Methanobacterium...    36   0.053
sp|Q9HN70|THSA_HALSA Thermosome subunit alpha OS=Halobacterium s...    36   0.069
sp|O28045|THSA_ARCFU Thermosome subunit alpha OS=Archaeoglobus f...    35   0.091
sp|Q32L40|TCPA_BOVIN T-complex protein 1 subunit alpha OS=Bos ta...    35   0.091
sp|O26320|THSA_METTH Thermosome subunit alpha OS=Methanobacteriu...    35   0.12 
sp|O30561|THS1_HALVO Thermosome subunit 1 OS=Halobacterium volca...    35   0.12 
sp|P54408|TCPG_TETPY T-complex protein 1 subunit gamma OS=Tetrah...    35   0.12 
sp|Q2T9X2|TCPD_BOVIN T-complex protein 1 subunit delta OS=Bos ta...    35   0.12 
sp|Q9W790|TCPA_PALPA T-complex protein 1 subunit alpha OS=Paleos...    35   0.15 
sp|Q7TPB1|TCPD_RAT T-complex protein 1 subunit delta OS=Rattus n...    34   0.20 

>sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Avena
           sativa PE=2 SV=1
          Length = 535

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 46/50 (92%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDMKEQNVFETLIGKQQQ LLATQVVKMILKIDDVITPS +
Sbjct: 486 GIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535


>sp|P40412|TCPE1_AVESA T-complex protein 1 subunit epsilon OS=Avena
           sativa PE=2 SV=1
          Length = 535

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 46/50 (92%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDMKEQNVFETLIGKQQQ LLATQVVKMILKIDDVITPS +
Sbjct: 486 GIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535


>sp|O04450|TCPE_ARATH T-complex protein 1 subunit epsilon
           OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1
          Length = 535

 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 43/50 (86%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDM+EQNVFETLIGKQQQ LLATQVVKMILKIDDVI+ S +
Sbjct: 486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535


>sp|Q54TD3|TCPE_DICDI T-complex protein 1 subunit epsilon
           OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1
          Length = 538

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 35/45 (77%), Positives = 39/45 (86%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVI 135
           GIDCN+  TNDMK Q+VF+TL GK QQFLLA QVVKMILKIDD+I
Sbjct: 486 GIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530


>sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pongo
           abelii GN=CCT5 PE=2 SV=1
          Length = 541

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GIDC + GTNDMK+Q+V ETLIGK+QQ  LATQ+V+MILKIDD+  P
Sbjct: 490 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536


>sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Macaca
           fascicularis GN=CCT5 PE=2 SV=1
          Length = 541

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GIDC + GTNDMK+Q+V ETLIGK+QQ  LATQ+V+MILKIDD+  P
Sbjct: 490 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536


>sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo
           sapiens GN=CCT5 PE=1 SV=1
          Length = 541

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GIDC + GTNDMK+Q+V ETLIGK+QQ  LATQ+V+MILKIDD+  P
Sbjct: 490 GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536


>sp|Q68FQ0|TCPE_RAT T-complex protein 1 subunit epsilon OS=Rattus
           norvegicus GN=Cct5 PE=1 SV=1
          Length = 541

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GIDC + G+NDM+ Q+V ETLIGK+QQ  LATQ+V+MILKIDD+  P
Sbjct: 490 GIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536


>sp|P80316|TCPE_MOUSE T-complex protein 1 subunit epsilon OS=Mus
           musculus GN=Cct5 PE=1 SV=1
          Length = 541

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GIDC + G+NDM+ Q+V ETLIGK+QQ  LATQ+V+MILKIDD+  P
Sbjct: 490 GIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536


>sp|P47209|TCPE_CAEEL T-complex protein 1 subunit epsilon
           OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1
          Length = 542

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 32/47 (68%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITP 141
           GID    GTNDMKEQ V ETL+ K++Q  LATQVV+MILKIDDV  P
Sbjct: 489 GIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVP 535
tr_hit_id B4FS49
Definition tr|B4FS49|B4FS49_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 50
Score (bit) 93.6
E-value 4.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945344|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A03, 5'
         (326 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FS49|B4FS49_MAIZE Putative uncharacterized protein OS=Zea m...    94   4e-18
tr|A9TJ27|A9TJ27_PHYPA Predicted protein OS=Physcomitrella paten...    92   1e-17
tr|A7P458|A7P458_VITVI Chromosome chr1 scaffold_5, whole genome ...    92   1e-17
tr|B6TSC6|B6TSC6_MAIZE T-complex protein 1 subunit epsilon OS=Ze...    91   2e-17
tr|B4FQL5|B4FQL5_MAIZE Putative uncharacterized protein OS=Zea m...    91   2e-17
tr|Q9ZSQ6|Q9ZSQ6_MESCR T-complex protein 1 epsilon subunit (Frag...    91   3e-17
tr|Q5Z907|Q5Z907_ORYSJ Os06g0562600 protein OS=Oryza sativa subs...    91   3e-17
tr|A3BCS7|A3BCS7_ORYSJ Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|A2YE41|A2YE41_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|B8LQY7|B8LQY7_PICSI Putative uncharacterized protein OS=Picea...    90   5e-17
tr|A9PAT0|A9PAT0_POPTR Putative uncharacterized protein OS=Popul...    89   8e-17
tr|Q3ED60|Q3ED60_ARATH Uncharacterized protein At1g24510.2 OS=Ar...    89   1e-16
tr|A7PJV1|A7PJV1_VITVI Chromosome chr12 scaffold_18, whole genom...    88   2e-16
tr|A8J7J2|A8J7J2_CHLRE T-complex protein, epsilon subunit OS=Chl...    83   8e-15
tr|A4RU28|A4RU28_OSTLU Predicted protein OS=Ostreococcus lucimar...    79   1e-13
tr|Q01D11|Q01D11_OSTTA Chaperonin complex component, TCP-1 beta ...    78   2e-13
tr|A9VCY3|A9VCY3_MONBE Predicted protein OS=Monosiga brevicollis...    74   4e-12
tr|A0BZU7|A0BZU7_PARTE Chromosome undetermined scaffold_14, whol...    73   8e-12
tr|A0D8I9|A0D8I9_PARTE Chromosome undetermined scaffold_41, whol...    72   1e-11
tr|A0CV26|A0CV26_PARTE Chromosome undetermined scaffold_29, whol...    72   1e-11
tr|Q7ZTM0|Q7ZTM0_XENLA Cct5-prov protein OS=Xenopus laevis GN=cc...    72   1e-11
tr|Q6P2Y0|Q6P2Y0_XENTR Chaperonin containing TCP1, subunit 5 (Ep...    72   1e-11
tr|Q4SMY2|Q4SMY2_TETNG Chromosome 6 SCAF14544, whole genome shot...    72   1e-11
tr|B6PAE5|B6PAE5_BRAFL Putative uncharacterized protein OS=Branc...    72   1e-11
tr|B6MPC5|B6MPC5_BRAFL Putative uncharacterized protein OS=Branc...    72   1e-11
tr|Q9PTW8|Q9PTW8_CARAU CCT (Chaperonin containing T-complex poly...    70   4e-11
tr|Q6NVI6|Q6NVI6_DANRE Chaperonin containing TCP1, subunit 5 (Ep...    70   4e-11
tr|Q5F411|Q5F411_CHICK Putative uncharacterized protein OS=Gallu...    70   4e-11
tr|B7Q6Y2|B7Q6Y2_IXOSC Chaperonin subunit, putative OS=Ixodes sc...    70   5e-11
tr|B0EMK1|B0EMK1_ENTDI T-complex protein 1 subunit epsilon, puta...    70   5e-11

>tr|B4FS49|B4FS49_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 535

 Score = 93.6 bits (231), Expect = 4e-18
 Identities = 45/50 (90%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDMKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535


>tr|A9TJ27|A9TJ27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170350 PE=3 SV=1
          Length = 535

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 44/50 (88%), Positives = 49/50 (98%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDM+EQNVFETLIGK+QQ LLATQVVKMILKIDDVI+PSS+
Sbjct: 486 GIDCNDVGTNDMREQNVFETLIGKKQQVLLATQVVKMILKIDDVISPSSY 535


>tr|A7P458|A7P458_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030706001
           PE=3 SV=1
          Length = 535

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 44/50 (88%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDM+EQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTNDMQEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535


>tr|B6TSC6|B6TSC6_MAIZE T-complex protein 1 subunit epsilon OS=Zea
           mays PE=2 SV=1
          Length = 535

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGT DMKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTTDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535


>tr|B4FQL5|B4FQL5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 535

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGT DMKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTTDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535


>tr|Q9ZSQ6|Q9ZSQ6_MESCR T-complex protein 1 epsilon subunit
           (Fragment) OS=Mesembryanthemum crystallinum
           GN=TCP-1-EPSILON PE=2 SV=1
          Length = 418

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 43/50 (86%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDM+EQNVFETLIGK+QQ LLATQVVKMILKIDDVI+PS +
Sbjct: 369 GIDCNDVGTNDMREQNVFETLIGKKQQLLLATQVVKMILKIDDVISPSEY 418


>tr|Q5Z907|Q5Z907_ORYSJ Os06g0562600 protein OS=Oryza sativa subsp.
           japonica GN=P0656E03.11 PE=2 SV=1
          Length = 535

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTN MKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY 535


>tr|A3BCS7|A3BCS7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020849 PE=3 SV=1
          Length = 535

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTN MKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY 535


>tr|A2YE41|A2YE41_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23386 PE=3 SV=1
          Length = 535

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTN MKEQNVFETLIGKQQQ LLATQVVKMILKIDDVI+PS +
Sbjct: 486 GIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY 535


>tr|B8LQY7|B8LQY7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 535

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 43/50 (86%), Positives = 47/50 (94%)
 Frame = +1

Query: 1   GIDCNNVGTNDMKEQNVFETLIGKQQQFLLATQVVKMILKIDDVITPSSF 150
           GIDCN+VGTNDMK QNVFETL+GK+QQ LLATQVVKMILKIDDVITPS +
Sbjct: 486 GIDCNDVGTNDMKAQNVFETLMGKKQQLLLATQVVKMILKIDDVITPSGY 535