DK945346 [AcEST]

DK945346
Clone id	YMU02A01NGRL0009_A07
Library	YMU02
Length	566
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_A07. 5' end sequence.
Accession	DK945346
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL2816Contig1
Sequence	AGCTCATCGAGTGACAGCGATGTTGGAGCATGAAGAGGCGTTTCAACGGGCCACTTCGTT GATGCCCCATTTGGTCGTCATGTTGTAGGTTCTTTCCATTAGATAGGAATTAGCCAGATG AATTGTATGTAATCAGGATGTATATACAGCAATTCTAACAAAGCTGTCCCTTGGTTCTTA CTTGTAAGGATGCTGAATCATCAAGATTGATAGGCTGATCATTTTTAGAGACGTTAACCT CCATCAGAGTGAGCATGATAGGCACTTGATTTAACTACCCCCCTCATGTAAGGAGCACAA CCACAAGGCACTTGCAGATTGTTTGTTTCGTAGCGGGGGGTTGTTAGAAGACCATTGACA GAAAGCATCAGTGATTCAGTTGTCTCTAGGCGCAAACAAAGCGTCATGGTATGGCTAGAG ATGTGTGTGGCAGCAGGTGTACCCTTTAATGGAACCTGCAAGCACAATATACTATCAGAC ACCTATTTGTGTAGGAGTGTTACTGGCTTAGCGACTGANAAGCTTTATTTTATTGCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P52452
Definition	sp\|P52452\|OBP_HHV6Z Replication origin-binding protein OS=Human herpesvirus 6B (strain Z29)
Align length	43
Score (bit)	30.8
E-value	4.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945346\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_A07, 5' (536 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P52452\|OBP_HHV6Z Replication origin-binding protein OS=Human ... 31 4.3 >sp\|P52452\|OBP_HHV6Z Replication origin-binding protein OS=Human herpesvirus 6B (strain Z29) GN=U73 PE=3 SV=1 Length = 780 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%) Frame = +1 Query: 385 SRRKQSVMVWLEMCVAAGVP-------FNGTCKHNILSDTYLC 492 S+R V VWL+ CV+AGV FN K +L ++LC Sbjct: 530 SKRYVFVNVWLQKCVSAGVESTRIERVFNERIKSYVLPKSFLC 572
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B2A9W4
Definition	tr\|B2A9W4\|B2A9W4_PODAN Predicted CDS Pa_1_2010 OS=Podospora anserina
Align length	64
Score (bit)	33.1
E-value	9.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945346\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_A07, 5' (536 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B2A9W4\|B2A9W4_PODAN Predicted CDS Pa_1_2010 OS=Podospora anse... 33 9.3 >tr\|B2A9W4\|B2A9W4_PODAN Predicted CDS Pa_1_2010 OS=Podospora anserina PE=4 SV=1 Length = 620 Score = 33.1 bits (74), Expect = 9.3 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = -1 Query: 458 QVPLKGTPAATHISSHTMTLCLRLETTESLMLSVNGLLTTPRYETNNLQVPCGCAPYMRG 279 + P+K TPAAT + T + +ETTE L V+ P T P R Sbjct: 412 EAPVKETPAATEAVAETAPVIPAVETTEPLSAEVSSPANVPTETTEVAAAPAETNGETRP 471 Query: 278 VVKS 267 VKS Sbjct: 472 AVKS 475