NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945350
Clone id YMU02A01NGRL0009_A11
Library
Length 417
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_A11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTCTGATGCCAGGAATCAACACTAGTACAAGGAAGTACAACTGTGTTCAGCCATTCCCA
GACTGTGGTCTTGTGCGGTAACTGCTCGGCGGTATTGTGCCAGCCCACAGGAGGCCGCGC
TCGACTTACTGAAGGCAGCTCCTTCAGGAAGAAGGGCGATTAAATGAGCATCTTACTTGT
CGATTCCACATCTTCACCAGCCCCCCATGTACACCTAGTTCATCCTCCAAGCCGAGGAGT
ATCAGAGTTTCTTTAACGAAATCAGAGTTTATGCATACCACATTTTCGAGTGTTAGCTTT
CAATGAGGGTCTCTATTGGCCTTGATTGTAAACTGTGAACAAAGTGGGAATTTGAGCTTA
TGAGGATTTAGTGTGGTTGGTTACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9M2F1
Definition sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2 OS=Arabidopsis thaliana
Align length 41
Score (bit) 78.2
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945350|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A11, 5'
         (387 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2 OS=Arabidopsis...    78   1e-14
sp|Q96564|RS27_HORVU 40S ribosomal protein S27 OS=Hordeum vulgar...    74   2e-13
sp|Q8L953|RS273_ARATH 40S ribosomal protein S27-3 OS=Arabidopsis...    74   2e-13
sp|O64650|RS271_ARATH 40S ribosomal protein S27-1 OS=Arabidopsis...    72   9e-13
sp|P47904|RS27_XENLA 40S ribosomal protein S27 OS=Xenopus laevis...    71   2e-12
sp|O74330|RS27_SCHPO 40S ribosomal protein S27 OS=Schizosaccharo...    71   2e-12
sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 OS=Rattus norvegicu...    71   2e-12
sp|Q5RBK1|RS27_PONAB 40S ribosomal protein S27 OS=Pongo abelii G...    71   2e-12
sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27 OS=Mus musculus G...    71   2e-12
sp|P42677|RS27_HUMAN 40S ribosomal protein S27 OS=Homo sapiens G...    71   2e-12
sp|Q2KHT7|RS27_BOVIN 40S ribosomal protein S27 OS=Bos taurus GN=...    71   2e-12
sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein OS=Ra...    71   2e-12
sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein OS=...    71   2e-12
sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein OS=...    71   2e-12
sp|Q3T0B7|RS27L_BOVIN 40S ribosomal protein S27-like protein OS=...    71   2e-12
sp|Q7RVN2|RS27_NEUCR 40S ribosomal protein S27 OS=Neurospora cra...    69   6e-12
sp|P47903|RS27_CHLRE 40S ribosomal protein S27 OS=Chlamydomonas ...    69   7e-12
sp|P55833|RS27_HOMAM 40S ribosomal protein S27 OS=Homarus americ...    65   1e-10
sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B OS=Saccharomyc...    64   2e-10
sp|P35997|RS27A_YEAST 40S ribosomal protein S27-A OS=Saccharomyc...    64   3e-10
sp|Q9TXP0|RS27_CAEEL 40S ribosomal protein S27 OS=Caenorhabditis...    62   1e-09
sp|Q8T1V4|RS27_DICDI 40S ribosomal protein S27 OS=Dictyostelium ...    61   2e-09
sp|P38654|RS27_ENTHI 40S ribosomal protein S27 OS=Entamoeba hist...    44   3e-04
sp|A1RRN0|RS27_PYRIL 30S ribosomal protein S27e OS=Pyrobaculum i...    38   0.018
sp|Q9YF01|RS27_AERPE 30S ribosomal protein S27e OS=Aeropyrum per...    37   0.040
sp|A4WLR8|RS27_PYRAR 30S ribosomal protein S27e OS=Pyrobaculum a...    35   0.15 
sp|A3MUV2|RS27_PYRCJ 30S ribosomal protein S27e OS=Pyrobaculum c...    34   0.26 
sp|Q8ZTY4|RS27_PYRAE 30S ribosomal protein S27e OS=Pyrobaculum a...    33   0.45 
sp|Q9UXZ3|RS27_PYRAB 30S ribosomal protein S27e OS=Pyrococcus ab...    33   0.45 
sp|Q9HRT7|RS27_HALSA 30S ribosomal protein S27e OS=Halobacterium...    32   0.76 

>sp|Q9M2F1|RS272_ARATH 40S ribosomal protein S27-2 OS=Arabidopsis
           thaliana GN=RPS27B PE=2 SV=2
          Length = 86

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  +LCQPTGG+A+LTEG SFR+KGD
Sbjct: 46  TTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86


>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 OS=Hordeum vulgare
           GN=RPS27 PE=3 SV=2
          Length = 86

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+C  C  VLCQPTGG+ARLTEG SFR+KGD
Sbjct: 46  TTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86


>sp|Q8L953|RS273_ARATH 40S ribosomal protein S27-3 OS=Arabidopsis
           thaliana GN=RPS27D PE=2 SV=2
          Length = 84

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSHSQTVV+CGNC  VLCQPTGG+ARL EG SFRKK
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84


>sp|O64650|RS271_ARATH 40S ribosomal protein S27-1 OS=Arabidopsis
           thaliana GN=RPS27A PE=2 SV=1
          Length = 84

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 31/39 (79%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSHSQTVV+CGNC  +LC PTGG+A+LTEG SFRKK
Sbjct: 46  TTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84


>sp|P47904|RS27_XENLA 40S ribosomal protein S27 OS=Xenopus laevis
           GN=rps27 PE=3 SV=2
          Length = 84

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVVLC  CS VLCQPTGG+ARLTEG SFR+K
Sbjct: 44  TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82


>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
           OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1
          Length = 83

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 30/39 (76%), Positives = 37/39 (94%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVV+CG+C++VLCQPTGG+ARL EG SFR+K
Sbjct: 44  TTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82


>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 OS=Rattus norvegicus
           GN=Rps27 PE=2 SV=3
          Length = 84

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVVLC  CS VLCQPTGG+ARLTEG SFR+K
Sbjct: 44  TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82


>sp|Q5RBK1|RS27_PONAB 40S ribosomal protein S27 OS=Pongo abelii
           GN=RPS27 PE=3 SV=3
          Length = 84

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVVLC  CS VLCQPTGG+ARLTEG SFR+K
Sbjct: 44  TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82


>sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27 OS=Mus musculus
           GN=Rps27 PE=1 SV=3
          Length = 84

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVVLC  CS VLCQPTGG+ARLTEG SFR+K
Sbjct: 44  TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82


>sp|P42677|RS27_HUMAN 40S ribosomal protein S27 OS=Homo sapiens
           GN=RPS27 PE=1 SV=3
          Length = 84

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKK 154
           TTVFSH+QTVVLC  CS VLCQPTGG+ARLTEG SFR+K
Sbjct: 44  TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
tr_hit_id A9RMR9
Definition tr|A9RMR9|A9RMR9_PHYPA Ribosomal protein S27 OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945350|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A11, 5'
         (387 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMR9|A9RMR9_PHYPA Ribosomal protein S27 OS=Physcomitrella p...    83   8e-15
tr|B5M1X0|B5M1X0_RHEAU Ribosomal protein S27-like protein OS=Rhe...    82   1e-14
tr|Q00UP4|Q00UP4_OSTTA Ribosomal protein S27 OS=Ostreococcus tau...    82   1e-14
tr|B7FHA3|B7FHA3_MEDTR Putative uncharacterized protein OS=Medic...    82   1e-14
tr|A7PA50|A7PA50_VITVI Ribosomal protein S27 OS=Vitis vinifera G...    82   2e-14
tr|A9SLV7|A9SLV7_PHYPA Ribosomal protein S27 OS=Physcomitrella p...    81   2e-14
tr|Q6RJZ9|Q6RJZ9_CAPAN Ribosomal protein S27 OS=Capsicum annuum ...    81   3e-14
tr|Q3HVK9|Q3HVK9_SOLTU Ribosomal protein S27 OS=Solanum tuberosu...    81   3e-14
tr|Q2VCJ1|Q2VCJ1_SOLTU Ribosomal protein S27 OS=Solanum tuberosu...    81   3e-14
tr|B7FN54|B7FN54_MEDTR Putative uncharacterized protein OS=Medic...    81   3e-14
tr|A7QTA0|A7QTA0_VITVI Ribosomal protein S27 OS=Vitis vinifera G...    81   3e-14
tr|A5APU3|A5APU3_VITVI Ribosomal protein S27 OS=Vitis vinifera G...    81   3e-14
tr|A9T7M9|A9T7M9_PHYPA Ribosomal protein S27 OS=Physcomitrella p...    80   4e-14
tr|A9NMW2|A9NMW2_PICSI Ribosomal protein S27 OS=Picea sitchensis...    80   5e-14
tr|A9NK30|A9NK30_PICSI Ribosomal protein S27 OS=Picea sitchensis...    79   1e-13
tr|A9PD60|A9PD60_POPTR Ribosomal protein S27 OS=Populus trichoca...    77   4e-13
tr|A9P8F6|A9P8F6_POPTR Ribosomal protein S27 OS=Populus trichoca...    77   4e-13
tr|A8J576|A8J576_CHLRE Ribosomal protein S27 OS=Chlamydomonas re...    77   6e-13
tr|A4S812|A4S812_OSTLU Ribosomal protein S27 OS=Ostreococcus luc...    77   6e-13
tr|A1YMY0|A1YMY0_BRACM Ribosomal protein S27 OS=Brassica campest...    76   7e-13
tr|A7YXQ1|A7YXQ1_9ALVE Ribosomal protein S27 OS=Perkinsus marinu...    75   2e-12
tr|B8CCJ1|B8CCJ1_THAPS RS27, ribosomal protein 27 40S small ribo...    75   2e-12
tr|B6TFY4|B6TFY4_MAIZE 40S ribosomal protein S27 OS=Zea mays PE=...    75   2e-12
tr|B8PCZ7|B8PCZ7_9APHY 40S ribosomal protein S27 OS=Postia place...    75   2e-12
tr|Q9ZQX9|Q9ZQX9_MAIZE Ribosomal protein S27 OS=Zea mays PE=3 SV=1     74   3e-12
tr|Q6K5R5|Q6K5R5_ORYSJ Ribosomal protein S27 OS=Oryza sativa sub...    74   3e-12
tr|Q5U7K8|Q5U7K8_9POAL Ribosomal protein S27 (Fragment) OS=Sacch...    74   3e-12
tr|Q5U7K1|Q5U7K1_9POAL Ribosomal protein S27 OS=Saccharum hybrid...    74   3e-12
tr|B6TUY0|B6TUY0_MAIZE 40S ribosomal protein S27 OS=Zea mays PE=...    74   3e-12
tr|A2X4T7|A2X4T7_ORYSI Ribosomal protein S27 OS=Oryza sativa sub...    74   3e-12

>tr|A9RMR9|A9RMR9_PHYPA Ribosomal protein S27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_160009 PE=3 SV=1
          Length = 86

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVVLCG+CS VLCQPTGGRARLTEG SFRKKGD
Sbjct: 46  TTVFSHSQTVVLCGSCSTVLCQPTGGRARLTEGCSFRKKGD 86


>tr|B5M1X0|B5M1X0_RHEAU Ribosomal protein S27-like protein OS=Rheum
           australe PE=4 SV=1
          Length = 86

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC AVLCQPTGGRARLTEG SFR+KGD
Sbjct: 46  TTVFSHSQTVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD 86


>tr|Q00UP4|Q00UP4_OSTTA Ribosomal protein S27 OS=Ostreococcus tauri
           GN=Ot16g00060 PE=3 SV=1
          Length = 100

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVVLCG+CSAVLCQPTGG+ARLTEG SFR+KGD
Sbjct: 60  TTVFSHSQTVVLCGSCSAVLCQPTGGKARLTEGCSFRRKGD 100


>tr|B7FHA3|B7FHA3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 86

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGGRARLTEG SFRKKGD
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86


>tr|A7PA50|A7PA50_VITVI Ribosomal protein S27 OS=Vitis vinifera
           GN=GSVIVT00037972001 PE=3 SV=1
          Length = 98

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGGRARLTEG SFRKKGD
Sbjct: 58  TTVFSHSQTVVVCGNCQLVLCQPTGGRARLTEGCSFRKKGD 98


>tr|A9SLV7|A9SLV7_PHYPA Ribosomal protein S27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_213752 PE=3 SV=1
          Length = 86

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVVLCG+CS VLCQPTGGRARLTEG SFRKKG+
Sbjct: 46  TTVFSHSQTVVLCGSCSTVLCQPTGGRARLTEGCSFRKKGE 86


>tr|Q6RJZ9|Q6RJZ9_CAPAN Ribosomal protein S27 OS=Capsicum annuum
           PE=3 SV=1
          Length = 52

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGGRARLTEG SFR+KGD
Sbjct: 12  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 52


>tr|Q3HVK9|Q3HVK9_SOLTU Ribosomal protein S27 OS=Solanum tuberosum
           PE=3 SV=1
          Length = 86

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGGRARLTEG SFR+KGD
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86


>tr|Q2VCJ1|Q2VCJ1_SOLTU Ribosomal protein S27 OS=Solanum tuberosum
           PE=3 SV=1
          Length = 86

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGGRARLTEG SFR+KGD
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86


>tr|B7FN54|B7FN54_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 86

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +2

Query: 38  TTVFSHSQTVVLCGNCSAVLCQPTGGRARLTEGSSFRKKGD 160
           TTVFSHSQTVV+CGNC  VLCQPTGG+ARLTEG SFRKKGD
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 86