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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945359
Clone id YMU02A01NGRL0009_A21
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_A21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAGTCATCTTTCATGTACTCTGTAAACAATGTAGAGCTTGTCTACAAGTCAAAGGGGAGC
TCGAAGAAAGGGAGAGGTTCTAGCTGAGATTTTGTGAAGTTTTCAATGCGTGCAAGGTGA
AAAATTCAATGTATACATACATGGACATGCATTGGGTCATTGGTACCTGCTGTCAAGTGA
AAGCTTGATAGAGTGGTTGTACTCCTTATGCGGACATGGAGAAAGGGGAAAGATGTAGCA
TATGGTGATATGATACTGACACAGTAAGGCCTCCTTGTAAAGGTTTAGTAAAGGATGTCA
CAGTTTACCTTGGTTGTGTTGGTTGGTTGTTATGTGCGCATTGTTCTATGCAGTTCATTG
AGCTTTTGGCTAGAAAGACGAACTACTTAGTTGTTTATGAAATTCTTTTGGCCTGCCAAA
AGGGCATGGCCATAGTGTCACCTGCCCCATTTGGGCTTAACTAAAGATATTTTTCTCCCA
ATGTTTGTTTAAAAATACTGTGACTGGATACTCAAAATAGTGATCGTTATGTGAG
■■Homology search results ■■ -
sp_hit_id Q9XE98
Definition sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana
Align length 60
Score (bit) 30.4
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945359|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A21, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protei...    30   5.7  
sp|Q9K8M3|Y2983_BACHD UPF0344 protein BH2983 OS=Bacillus halodur...    30   9.7  

>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein
           At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1
          Length = 729

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 50  QRGARRKGEVLAEIL*SFQCVQGEKFNV--YIHGHALGHWYLLSSESL--IEWLYSLCGH 217
           Q G+    E +A ++ S  C Q   F++   +HG+ L H Y L + +L  +  +Y+ CGH
Sbjct: 339 QSGSDLSSEAIASVVAS--CAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGH 396


>sp|Q9K8M3|Y2983_BACHD UPF0344 protein BH2983 OS=Bacillus halodurans
           GN=BH2983 PE=3 SV=1
          Length = 124

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 119 EKFNVYIHGHALGHWYLLSSESLIEWLYSLCGHGERGKM*HMVI 250
           E +N++   H  G W +L    L+ +     G G+ GK+ HM++
Sbjct: 4   ELYNIFYESHR-GSWAILIILFLVSYFLIKAGKGKAGKILHMIV 46
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945359|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A21, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******