DK945360
Clone id YMU02A01NGRL0009_A22
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_A22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AACCTCATCCATTCAACAAAATTTTGCGAGGCCTTATCTCGAGTGGCTTGTCTACCTTTC
GTGTTCTCCACACGCCTCATTCGCGCGCAGAGAGAGCTGCCGAGCATAGCCAGTGGCCAT
GGCAGTGATGGCAGCAACAGACATGGCTTTGAGTGCGATGCCTTCCATGGCAGCAGTCAC
AAGGGCAGACTGCAAGCCATCGAGGAGGGCGGTATCGCTGGGTAGGAAGATGAAGAGCTT
CTCAGGTATGAAATCAGAGAGTCGAATTGGCAGGCTCGGGCTTTCTGAAAGCACAGAGGA
GCATTTTGCGAGGGCTGTGTTGGCGCACGCGAGAAGTACGGCTGGGAGCAGAGGGGGGGC
TGCTTCTTCTACTTGCAATGTTGCAGACGAGATCTTTCGCGTGGTGCCCATCATGAGTGG
CCTTGTGCTCATTGGCATCGCTCTTGGCTTTGTCCTCCTCCGAGTTGAGGCTGCTCTTGA
GGAATCTGAGTAAATTGAACCCTCTTCCTCTCTGACCCTACCTGCATTTCTTGTCATAAT
TTGTAATTCCATGAAAATGTAATCAGTTCTTTTGTCAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id P80883
Definition sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea
Align length 34
Score (bit) 48.1
E-value 3.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945360|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A22, 5'
(576 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment... 48 3e-05
sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus GN=A... 34 0.60
sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7, chloropl... 32 2.3
sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emilia... 32 3.0
sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subuni... 31 3.9
sp|P56254|KAB1_OLDAF Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE... 31 3.9
sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila me... 31 5.1
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom... 30 6.6
sp|Q8IYS4|CP071_HUMAN Uncharacterized protein C16orf71 OS=Homo s... 30 8.7

>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment)
OS=Spinacia oleracea GN=petM PE=1 SV=1
Length = 36

Score = 48.1 bits (113), Expect = 3e-05
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +2

Query: 377 NVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
N A EIFR+ +M+GL L+G+A+GFVLLR+EA +
Sbjct: 1 NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATV 34


>sp|Q9QY30|ABCBB_MOUSE Bile salt export pump OS=Mus musculus
GN=Abcb11 PE=1 SV=1
Length = 1321

Score = 33.9 bits (76), Expect = 0.60
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1

Query: 130 GSNRHGFECDAFHGSSHKGRLQXXXXXXXXXXXXXXLLRYEIRESNW 270
G H FE D FH + K RLQ L R+ + NW
Sbjct: 14 GEENHAFESDGFHNNDKKSRLQDKKKGEGARVGFFELFRFSSSKDNW 60


>sp|Q42496|PETM_CHLRE Cytochrome b6-f complex subunit 7,
chloroplastic OS=Chlamydomonas reinhardtii GN=petM PE=1
SV=1
Length = 99

Score = 32.0 bits (71), Expect = 2.3
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2

Query: 413 MSGLVLIGIALGFVLLRVEA 472
M G+ L+G+A+GFVLLRVE+
Sbjct: 73 MVGMTLVGLAIGFVLLRVES 92


>sp|Q4G3B3|PETM_EMIHU Cytochrome b6-f complex subunit 7 OS=Emiliania
huxleyi GN=petM PE=3 SV=1
Length = 32

Score = 31.6 bits (70), Expect = 3.0
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2

Query: 380 VADEIFRVVPIMSGLVLIGIALGFVLLRVE 469
+A EIF V +M LVL G+++GF LL+++
Sbjct: 1 MAKEIFTVAGVMWALVLTGLSVGFGLLKIQ 30


>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit
SNF5 OS=Saccharomyces cerevisiae GN=SNF5 PE=1 SV=2
Length = 905

Score = 31.2 bits (69), Expect = 3.9
Identities = 26/91 (28%), Positives = 39/91 (42%)
Frame = -2

Query: 533 QEMQVGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*KKQPP 354
Q+ Q ++++ Q Q Q+Q Q Q Q++ Q QG P+ + Q QPP
Sbjct: 232 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGQ---IPQSQQVPQVRSMSGQPP 288

Query: 353 LCSQPYFSRAPTQPSQNAPLCFQKARACQFD 261
QP + P P N P K + Q+D
Sbjct: 289 TNVQPTIGQLPQLPKLNLP----KYQTIQYD 315


>sp|P56254|KAB1_OLDAF Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE=1
SV=3
Length = 124

Score = 31.2 bits (69), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1

Query: 207 LLDGLQSALVTAAMEGIALKAMSVAAITAMATG--YARQLSLRANEACGE 64
+LDG+++ LVT E + L+ M A T+ + +QL L+ CGE
Sbjct: 46 ILDGVEATLVTDVAEKMFLRKMKAEAKTSETADQVFLKQLQLKGLPVCGE 95


>sp|P22293|SUS_DROME Protein suppressor of sable OS=Drosophila
melanogaster GN=su(s) PE=1 SV=2
Length = 1325

Score = 30.8 bits (68), Expect = 5.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +1

Query: 310 EGCVGAREKYGWEQRGG------CFFYLQ--CCRRDLSRGAHHEWPCAHWHRSWLC 453
EG G +EK G R C FYL C +RD H E+PC +++ C
Sbjct: 313 EGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMDC 368


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
sapiens GN=PLA2R1 PE=1 SV=2
Length = 1463

Score = 30.4 bits (67), Expect = 6.6
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -2

Query: 521 VGSERKRVQFTQIPQEQPQLGGGQSQERCQ*AQGHS*WAPRERSRLQHCK*KKQPPLCSQ 342
VG + + VQ+T QP+ GG C +G P R ++HC+ K LC Q
Sbjct: 594 VGQKPEPVQYTHWNTHQPRYSGG-----CVAMRGRH---PLGRWEVKHCRHFKAMSLCKQ 645

Query: 341 PYFSRAPTQPSQNAP 297
P ++ + + P
Sbjct: 646 PVENQEKAEYEERWP 660


>sp|Q8IYS4|CP071_HUMAN Uncharacterized protein C16orf71 OS=Homo
sapiens GN=C16orf71 PE=2 SV=2
Length = 520

Score = 30.0 bits (66), Expect = 8.7
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = -1

Query: 297 SVLSESPSLPIRLSDFIPEKLFIFLPSDTALLDGLQSALVTAAMEGIALKAMSVAAITAM 118
S+ S+SP LSD+ E+LFIF + T+L+ L L +G +A AA ++
Sbjct: 36 SLDSDSP-----LSDYGEEELFIFQRNQTSLIPDLSEELAEDPADGDKSRAWVAAAEESL 90

Query: 117 ATGYARQLSLRANEACGEHER 55
L C ++ R
Sbjct: 91 PEPVLVPAELATEPGCRQNTR 111


tr_hit_id A9RKI9
Definition tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 107
Score (bit) 84.7
E-value 3.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945360|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_A22, 5'
(576 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten... 85 3e-15
tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten... 82 2e-14
tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea... 75 3e-12
tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs... 72 2e-11
tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza... 72 2e-11
tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 66 1e-09
tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ... 66 1e-09
tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis... 66 1e-09
tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul... 65 3e-09
tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 64 8e-09
tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome... 61 5e-08
tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic... 59 2e-07
tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz... 54 6e-06
tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho... 52 2e-05
tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido... 52 3e-05
tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt... 37 1.0
tr|Q9XFU3|Q9XFU3_9CHLO Putative uncharacterized protein OS=Chlam... 34 5.0
tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub... 34 6.5
tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub... 34 6.5
tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=... 34 6.5
tr|A2AUN4|A2AUN4_MOUSE ATP-binding cassette sub-family B (MDR/TA... 34 6.7
tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04... 34 6.7
tr|Q7Y0K2|Q7Y0K2_LOPEL X-type HMW glutenin subunit Ee2.1 OS=Loph... 33 8.6
tr|Q19A59|Q19A59_LOPEL High molecular weight glutenin x-type sub... 33 8.6
tr|A9PK57|A9PK57_POPJC Putative uncharacterized protein OS=Popul... 33 8.6
tr|Q5KA01|Q5KA01_CRYNE Ubiquitin-specific protease, putative OS=... 33 8.6
tr|Q08VG2|Q08VG2_STIAU Putative uncharacterized protein OS=Stigm... 33 8.7

>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1
Length = 112

Score = 84.7 bits (208), Expect = 3e-15
Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +2

Query: 161 PSMAAVTRADCKPSRRAVSLG-RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXX 337
PS+A T + S + LG RK+K+FSG++ ES++ R+G+ STEE FA +
Sbjct: 7 PSLAVSTSTSKRSSSK---LGVRKLKNFSGLQPESQVTRMGMPVSTEEAFAN--IRARWS 61

Query: 338 XXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 62 GRASRGGALSANCDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108


>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1
Length = 90

Score = 82.4 bits (202), Expect = 2e-14
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +2

Query: 224 RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXXXXXXXXXXXXXXCNVADEIFRV 403
RK+K+F G+KS+S++ R+G+ STEE FA + C+VA EIFR+
Sbjct: 4 RKLKNFGGLKSDSQVTRMGMPVSTEEAFAS--VKAKCSGRVSRGGALAANCDVASEIFRI 61

Query: 404 VPIMSGLVLIGIALGFVLLRVEAAL 478
VPIMSGL L+GIA+GFVLLRVEAA+
Sbjct: 62 VPIMSGLTLVGIAIGFVLLRVEAAV 86


>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 129

Score = 74.7 bits (182), Expect = 3e-12
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Frame = +2

Query: 194 KPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVL---AHXXXXXXXXXXXX 364
KP V R +KS++G+K E+++ LG++ +++ FAR V A
Sbjct: 27 KPKMNKVCCVRGLKSYAGLKPENKVMNLGVAVHSDKQFARLVTMCRALKANSGGGRGGAL 86

Query: 365 XXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
CNVA EI +VPIMS LVLIG+A+GFVLLRVEAA+
Sbjct: 87 ASTCNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124


>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0079B15.15 PE=4 SV=1
Length = 118

Score = 72.4 bits (176), Expect = 2e-11
Identities = 41/109 (37%), Positives = 63/109 (57%)
Frame = +2

Query: 152 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 331
+ +PS+A A K R V+ M ++SG+K+ +++ LG+ ++ + FA+ V
Sbjct: 8 TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 332 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 66 PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_13659 PE=4 SV=1
Length = 118

Score = 72.4 bits (176), Expect = 2e-11
Identities = 41/109 (37%), Positives = 63/109 (57%)
Frame = +2

Query: 152 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 331
+ +PS+A A K R V+ M ++SG+K+ +++ LG+ ++ + FA+ V
Sbjct: 8 TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65

Query: 332 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+
Sbjct: 66 PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114


>tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
mays PE=4 SV=1
Length = 117

Score = 66.2 bits (160), Expect = 1e-09
Identities = 38/110 (34%), Positives = 61/110 (55%)
Frame = +2

Query: 149 LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 328
++ +PS+AA K V+ M ++SG+K +++ LG+ ++ + FA+ V +
Sbjct: 7 VATVPSLAAPA---AKKRSGGVTYVEGMNAYSGLKGLNKVNMLGVRKTADYSFAKVVASL 63

Query: 329 XXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 478
N A EIFR+ M+GLVL+G+A+GFVLLRVEAA+
Sbjct: 64 SPAGRKRRGGAFGAQMNAAAEIFRIAATMNGLVLVGVAVGFVLLRVEAAV 113


>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001
PE=4 SV=1
Length = 201

Score = 66.2 bits (160), Expect = 1e-09
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2

Query: 230 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 403
+ SF G+K+ + + LGL TE+ FA+ V L CN EIFR+
Sbjct: 113 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRI 172

Query: 404 VPIMSGLVLIGIALGFVLLRVEAAL 478
IM+GLVL+G+A+GFVLLR+EA++
Sbjct: 173 AAIMNGLVLVGVAVGFVLLRIEASV 197


>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027615 PE=4 SV=1
Length = 126

Score = 66.2 bits (160), Expect = 1e-09
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2

Query: 230 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 403
+ SF G+K+ + + LGL TE+ FA+ V L CN EIFR+
Sbjct: 38 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRI 97

Query: 404 VPIMSGLVLIGIALGFVLLRVEAAL 478
IM+GLVL+G+A+GFVLLR+EA++
Sbjct: 98 AAIMNGLVLVGVAVGFVLLRIEASV 122


>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 122

Score = 65.1 bits (157), Expect = 3e-09
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Frame = +2

Query: 161 PSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXX 334
P++ A + K + V+ + SF G+K+ + + LGLS +E+ FA+ V L
Sbjct: 11 PTLVASAVSSPKRKQTNVNYITGLNSFGGLKAHNSVSSLGLSVGSEQSFAKIVSSLKAPS 70

Query: 335 XXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 472
C+ EIFR+ +M+GLVL+G+A+GFVLLR+EA
Sbjct: 71 KGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEA 116


>tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Zea
mays PE=4 SV=1
Length = 117

Score = 63.5 bits (153), Expect = 8e-09
Identities = 39/108 (36%), Positives = 61/108 (56%)
Frame = +2

Query: 149 LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 328
++ PS+AA A +P+ V+ M ++SG+K +++ LG+ ++ + FA+ V +
Sbjct: 6 VATAPSLAAPA-AKRRPAA-GVTYVEGMNAYSGLKGLNKVTMLGVRKTADYSFAKVVASL 63

Query: 329 XXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 472
N A EIFR+ MSGLVL+G+A+GFVLLRVEA
Sbjct: 64 SPAGRKRRGGAFGAQMNAAAEIFRIAATMSGLVLVGVAVGFVLLRVEA 111