DK945383
Clone id YMU02A01NGRL0009_C04
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_C04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTGGTCGCAGAAACAGAAGCCCAGTTAGGGAGGGCAGTGCAGAGCGTCGAGCTAAGATCG
AGCAATGGAATAGAGAGCGTGAAGAACTACAACGCGGAACTGCTAGCAGACAGGAGCAGT
GATCAGGTATGTTTGCAGATGCTATTTAGTTATTTCCTGAAGTTCGGGCATGATTATGGA
CTTTTCTCCGTTGCTTCTACAGGGTGGACTTTTGTATGGATCTTGGTTTAGGGTCTCTTT
ACAGTTTACTGAAATTGGAATTCCCATTGGGTTTGCTGCTCAGCACATCTCCATGTTAAT
CCCTGCGTAATGCCTGCTCAGATGAGCCCTTTTCTCCAGTTTGAACACATGTTTTGACAT
AACTATCATCGATGAACTTTGTTTTGAAGAGCATGCAGTCATTAGCTGAATTAAGGAATT
GCTGTTAGCATATTTTTGACTTTTTTAAAGATTTGTCAAGGGTTAAGTACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6AUG0
Definition sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica
Align length 27
Score (bit) 51.2
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945383|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C04, 5'
(470 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Or... 51 2e-06
sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Or... 49 1e-05
sp|Q4L8Q7|NREB_STAHJ Oxygen sensor histidine kinase nreB OS=Stap... 29 9.1
sp|O52027|ARSA_HALSA Putative arsenical pump-driving ATPase OS=H... 29 9.1

>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza
sativa subsp. japonica GN=U2AF35B PE=2 SV=1
Length = 304

Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREE 86
RR RSPVRE S ERRAKIEQWNREREE
Sbjct: 276 RRARSPVRESSEERRAKIEQWNREREE 302


>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza
sativa subsp. japonica GN=U2AF35A PE=2 SV=1
Length = 290

Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3

Query: 9 RNRSPVREGSAERRAKIEQWNREREELQ 92
R RSPVR+GS ERRA+IEQWNRERE Q
Sbjct: 262 RTRSPVRDGSEERRAQIEQWNREREAAQ 289


>sp|Q4L8Q7|NREB_STAHJ Oxygen sensor histidine kinase nreB
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=nreB
PE=3 SV=1
Length = 344

Score = 29.3 bits (64), Expect = 9.1
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1

Query: 19 AQLGRAVQSVELRSSNGIESVKNYNAELLADRSSDQVCLQMLF-SYFLKFGHDYGL 183
AQL + +EL SN I +++ + EL S D + L+ F SYF + ++YGL
Sbjct: 182 AQLIEKSEHIELLMSNLINDIRDLSVELRPS-SLDDLGLEAAFKSYFKQLEYNYGL 236


>sp|O52027|ARSA_HALSA Putative arsenical pump-driving ATPase
OS=Halobacterium salinarium GN=arsA PE=3 SV=1
Length = 644

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1

Query: 76 SVKNYNAELLADRSSDQVCLQMLFSYFLKFGHDYGLFSVASTGWT 210
+V N EL + + + L+ SYF + G+D +F A TG T
Sbjct: 444 AVANVEEELESPCAEEMAALEKFVSYFEEDGYDIVVFDTAPTGHT 488


tr_hit_id A7PPK3
Definition tr|A7PPK3|A7PPK3_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera
Align length 30
Score (bit) 58.9
E-value 1.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945383|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C04, 5'
(470 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PPK3|A7PPK3_VITVI Chromosome chr8 scaffold_23, whole genome... 59 1e-07
tr|A9NVR9|A9NVR9_PICSI Putative uncharacterized protein OS=Picea... 56 1e-06
tr|B8LNG3|B8LNG3_PICSI Putative uncharacterized protein OS=Picea... 53 7e-06
tr|B6T7D3|B6T7D3_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 52 1e-05
tr|B4FQ72|B4FQ72_MAIZE Putative uncharacterized protein OS=Zea m... 52 1e-05
tr|A7QPI3|A7QPI3_VITVI Chromosome chr18 scaffold_137, whole geno... 52 1e-05
tr|Q99L29|Q99L29_MOUSE cDNA sequence BC003883 OS=Mus musculus GN... 52 2e-05
tr|Q5QLR4|Q5QLR4_ORYSJ U2 auxiliary factor small chain-like (Put... 51 3e-05
tr|B7EHH7|B7EHH7_ORYSJ cDNA clone:001-039-A01, full insert seque... 51 3e-05
tr|B6TX31|B6TX31_MAIZE Putative uncharacterized protein OS=Zea m... 51 3e-05
tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 51 3e-05
tr|A2WTL5|A2WTL5_ORYSI Putative uncharacterized protein OS=Oryza... 51 3e-05
tr|A2WTL0|A2WTL0_ORYSI Putative uncharacterized protein OS=Oryza... 51 3e-05
tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum P... 50 4e-05
tr|A9RKV0|A9RKV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 50 6e-05
tr|B6TRJ7|B6TRJ7_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 50 7e-05
tr|B6TCE1|B6TCE1_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 50 7e-05
tr|B6SY08|B6SY08_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 50 7e-05
tr|B4FAF4|B4FAF4_MAIZE Putative uncharacterized protein OS=Zea m... 50 7e-05
tr|B7E7L8|B7E7L8_ORYSJ cDNA clone:001-044-E06, full insert seque... 49 1e-04
tr|A2Z2M2|A2Z2M2_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A9TES1|A9TES1_PHYPA Predicted protein OS=Physcomitrella paten... 49 2e-04
tr|Q9S709|Q9S709_ARATH T22C5.10 (At1g27650/T22C5_2) (Putative U2... 47 6e-04
tr|Q945S1|Q945S1_ARATH U2 auxiliary factor small subunit OS=Arab... 47 6e-04
tr|A8MRI1|A8MRI1_ARATH Uncharacterized protein At1g27650.2 OS=Ar... 47 6e-04
tr|Q9FMY5|Q9FMY5_ARATH U2 snRNP auxiliary factor, small subunit ... 46 8e-04
tr|Q945S0|Q945S0_ARATH U2 auxiliary factor small subunit OS=Arab... 46 8e-04
tr|A5K4K6|A5K4K6_PLAVI U2 snRNP auxiliary factor, small subunit,... 42 0.015
tr|B7FFR4|B7FFR4_MEDTR Putative uncharacterized protein (Fragmen... 42 0.020
tr|B3L4Z6|B3L4Z6_PLAKH U2 snRNP auxiliary factor, small subunit,... 42 0.020

>tr|A7PPK3|A7PPK3_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021681001
PE=4 SV=1
Length = 317

Score = 58.9 bits (141), Expect = 1e-07
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3

Query: 3 GRRNRSPVREGSAERRAKIEQWNREREELQ 92
GRRN+SPVREGSAERRAKIEQWNRERE+ +
Sbjct: 241 GRRNKSPVREGSAERRAKIEQWNREREQAE 270


>tr|A9NVR9|A9NVR9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 312

Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREELQRGTASRQEQ*SG 128
RRNRSP+REGSAERRAKIEQWNRE+E T + +G
Sbjct: 260 RRNRSPIREGSAERRAKIEQWNREKEAQASSTIANHPMQNG 300


>tr|B8LNG3|B8LNG3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 344

Score = 53.1 bits (126), Expect = 7e-06
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREELQRGTASRQEQ*SG 128
+RNR VREGSAERRAKIEQWNRERE+ + + + +G
Sbjct: 288 KRNRGSVREGSAERRAKIEQWNREREQAATSSTANESMQNG 328


>tr|B6T7D3|B6T7D3_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea
mays PE=2 SV=1
Length = 284

Score = 52.0 bits (123), Expect = 1e-05
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3

Query: 9 RNRSPVREGSAERRAKIEQWNREREELQ 92
R+RSPVREGS ERRAKIEQWNRERE Q
Sbjct: 256 RSRSPVREGSEERRAKIEQWNREREAAQ 283


>tr|B4FQ72|B4FQ72_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 287

Score = 52.0 bits (123), Expect = 1e-05
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +3

Query: 9 RNRSPVREGSAERRAKIEQWNREREELQ 92
R+RSPVREGS ERRAKIEQWNRERE Q
Sbjct: 259 RSRSPVREGSEERRAKIEQWNREREAAQ 286


>tr|A7QPI3|A7QPI3_VITVI Chromosome chr18 scaffold_137, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00002951001
PE=4 SV=1
Length = 272

Score = 52.0 bits (123), Expect = 1e-05
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREELQ 92
RR+RSPVREGS ERRA+IE WNREREE Q
Sbjct: 244 RRSRSPVREGSEERRARIELWNREREERQ 272


>tr|Q99L29|Q99L29_MOUSE cDNA sequence BC003883 OS=Mus musculus
GN=BC003883 PE=2 SV=1
Length = 310

Score = 51.6 bits (122), Expect = 2e-05
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3

Query: 3 GRRNRSPVREGSAERRAKIEQWNREREELQRG 98
GRR+RSPVRE S ERRAKI QWNRE+E+ G
Sbjct: 250 GRRDRSPVRENSEERRAKIAQWNREKEQADTG 281


>tr|Q5QLR4|Q5QLR4_ORYSJ U2 auxiliary factor small chain-like
(Putative uncharacterized protein) (Os01g0667800
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0063G05.30 PE=4 SV=1
Length = 258

Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREELQ 92
RR RSPVRE S ERRAKIEQWNRER+E Q
Sbjct: 229 RRARSPVRESSEERRAKIEQWNRERDEKQ 257


>tr|B7EHH7|B7EHH7_ORYSJ cDNA clone:001-039-A01, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 304

Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREE 86
RR RSPVRE S ERRAKIEQWNREREE
Sbjct: 276 RRARSPVRESSEERRAKIEQWNREREE 302


>tr|B6TX31|B6TX31_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 165

Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3

Query: 6 RRNRSPVREGSAERRAKIEQWNREREELQ 92
RR RSPVRE S ERRAKIEQWNRERE Q
Sbjct: 137 RRGRSPVRESSEERRAKIEQWNRERESKQ 165