NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945384
Clone id YMU02A01NGRL0009_C05
Library
Length 233
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_C05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATG
GTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGC
ACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGA
CCGATAGCGAAGCAGTACCGTGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P09695
Definition sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain AD169)
Align length 36
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945384|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C05, 5'
         (205 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   4.9  
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     30   4.9  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   4.9  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   4.9  

>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 155
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 194  CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 63
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 155
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 3   ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 107
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 89.0
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945384|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C05, 5'
         (205 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   1e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    75   2e-12
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            60   7e-08
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    53   4e-07
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    55   2e-06
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    54   3e-06
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    53   7e-06
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    52   1e-05
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    52   2e-05
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    50   4e-05
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    49   1e-04
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    49   2e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    48   2e-04
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    47   4e-04
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    44   0.005
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.026
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    41   0.026
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    41   0.026
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    41   0.034
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    40   0.075

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 39  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +3

Query: 60  GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 200
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/36 (77%), Positives = 29/36 (80%)
 Frame = -3

Query: 203 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 96
           SRY FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 9   SRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 53.1 bits (126), Expect(2) = 4e-07
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = -3

Query: 203 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 108
           SRY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 23.9 bits (50), Expect(2) = 4e-07
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 91  LAVLPATGLSPSGVQH 44
           L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/50 (54%), Positives = 33/50 (66%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 56
           PHGT SLSV++EYLA +GGP  F +DF CP LL      +    TGLSP+
Sbjct: 32  PHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 27/50 (54%), Positives = 33/50 (66%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 56
           PHGT+SLSVT+EYL L+ GP  F +DF CP LL  +        TGLSP+
Sbjct: 108 PHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
           OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
          Length = 171

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 28/49 (57%), Positives = 32/49 (65%)
 Frame = -1

Query: 205 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSP 59
           PHGT SLSV+QEYLAL+ GP  F +D  CP LL    + A    TGLSP
Sbjct: 24  PHGTGSLSVSQEYLALEDGPPIFRQDITCPALLDFTLDEA--SVTGLSP 70