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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945390
Clone id YMU02A01NGRL0009_C13
Library
Length 308
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_C13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAATAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCATAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAAAAAAAAAAAAAAAAAAAACATGT
AGGCATGT
■■Homology search results ■■ -
sp_hit_id A3DE13
Definition sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
Align length 31
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945390|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C13, 5'
         (269 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridi...    30   4.9  
sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   6.4  
sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase OS=Streptoco...    29   6.4  
sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   6.4  
sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  
sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  
sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase OS=Streptoco...    29   8.4  

>sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237) GN=tgt PE=3
           SV=1
          Length = 374

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S IR  LI     S   LG++ T H CF TP
Sbjct: 2   SAIRYELIKKCKQSGARLGRVYTPHGCFDTP 32


>sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae serotype 2 (strain D39 /
           NCTC 7466) GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase
           OS=Streptococcus sanguinis (strain SK36) GN=tgt PE=3
           SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase
           OS=Streptococcus mutans GN=tgt PE=3 SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGVFPTP 34


>sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase
           OS=Streptococcus gordonii (strain Challis / ATCC 35105 /
           CH1 / DL1 / V288) GN=tgt PE=3 SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 233
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945390|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_C13, 5'
         (269 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    34   4.1  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/50 (30%), Positives = 31/50 (62%)
 Frame = -1

Query: 188 LK*MSDEID*STSNFGEIIRKHIYSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     +++++ A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283