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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945403
Clone id YMU02A01NGRL0009_D05
Library
Length 320
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_D05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGAAGCACGTGAAGACTTGGC
CGCTCTTGAGAAGGATTATGAGGAGGTGGGTGCAGAAGGTCAGGACGATGATGGTGGAGA
AGAGGAGTACTAGGAAGGAGTATTGGGGAACTATTTTATGCTATCCGAATGTTGGGATTG
TTTTGCGTTGACAGTTGGTGATGTGTGCTTGCTTGTGTGGGTGTGAAAGAGCAACAGTTG
ATTGGGGGAGTGGTACTTTAAGAAATAAAGAGGTTTTGTTTTATCTATCAACAGGAATCC
AAACAAAGCTCAACATGTCA
■■Homology search results ■■ -
sp_hit_id Q9ZRB7
Definition sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum
Align length 13
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D05, 5'
         (280 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum GN=...    29   6.4  
sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=...    29   6.4  
sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei rh...    29   6.4  
sp|P10873|TBA_TOXGO Tubulin alpha chain OS=Toxoplasma gondii PE=...    29   6.4  
sp|P41351|TBA_TETTH Tubulin alpha chain OS=Tetrahymena thermophi...    29   6.4  
sp|P10872|TBA_TETPY Tubulin alpha chain OS=Tetrahymena pyriformi...    29   6.4  
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA...    29   6.4  
sp|P12543|TBA_PLAYO Tubulin alpha chain OS=Plasmodium yoelii yoe...    29   6.4  
sp|P14642|TBA_PLAFK Tubulin alpha chain OS=Plasmodium falciparum...    29   6.4  
sp|P28287|TBA_OXYGR Tubulin alpha chain OS=Oxytricha granulifera...    29   6.4  
sp|P24635|TBA_OCTVU Tubulin alpha chain (Fragment) OS=Octopus vu...    29   6.4  
sp|Q06331|TBA_OCTDO Tubulin alpha chain OS=Octopus dofleini PE=2...    29   6.4  
sp|Q71G51|TBA_NEOCA Tubulin alpha chain OS=Neospora caninum GN=T...    29   6.4  
sp|P02553|TBA_LYTPI Tubulin alpha chain (Fragment) OS=Lytechinus...    29   6.4  
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain OS=Lepidoglyphus destruc...    29   6.4  
sp|P50719|TBA_HAECO Tubulin alpha chain OS=Haemonchus contortus ...    29   6.4  
sp|Q9C413|TBA_GLOLA Tubulin alpha chain OS=Glomerella lagenarium...    29   6.4  
sp|P28268|TBA_EUPVA Tubulin alpha chain OS=Euplotes vannus PE=3 ...    29   6.4  
sp|Q08114|TBA_EUPOC Tubulin alpha chain OS=Euplotes octocarinatu...    29   6.4  
sp|P33625|TBA_EUGGR Tubulin alpha chain OS=Euglena gracilis GN=T...    29   6.4  
sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA ...    29   6.4  
sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain OS=Chlorella vulgaris GN...    29   6.4  
sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1       29   6.4  
sp|Q08628|TBA_BLEJA Tubulin alpha chain (Fragment) OS=Blepharism...    29   6.4  
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Onc...    29   6.4  
sp|P04105|TBAN_PHYPO Tubulin alpha-1B chain OS=Physarum polyceph...    29   6.4  
sp|Q3UX10|TBAL3_MOUSE Tubulin alpha chain-like 3 OS=Mus musculus...    29   6.4  
sp|P11480|TBAE_PHYPO Tubulin alpha-2B chain OS=Physarum polyceph...    29   6.4  
sp|P50258|TBAD_PHYPO Tubulin alpha-1A chain OS=Physarum polyceph...    29   6.4  
sp|P49742|TBAB_SCHCO Tubulin alpha-1B chain OS=Schizophyllum com...    29   6.4  

>sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain OS=Triticum aestivum
           GN=TUBA PE=2 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=3
           SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei
           rhodesiense PE=3 SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P10873|TBA_TOXGO Tubulin alpha chain OS=Toxoplasma gondii PE=3
           SV=1
          Length = 453

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P41351|TBA_TETTH Tubulin alpha chain OS=Tetrahymena thermophila
           PE=3 SV=1
          Length = 449

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P10872|TBA_TETPY Tubulin alpha chain OS=Tetrahymena pyriformis
           PE=3 SV=1
          Length = 449

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA
           PE=2 SV=1
          Length = 450

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P12543|TBA_PLAYO Tubulin alpha chain OS=Plasmodium yoelii yoelii
           GN=PY01155 PE=2 SV=2
          Length = 453

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P14642|TBA_PLAFK Tubulin alpha chain OS=Plasmodium falciparum
           (isolate K1 / Thailand) PE=3 SV=1
          Length = 453

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432


>sp|P28287|TBA_OXYGR Tubulin alpha chain OS=Oxytricha granulifera
           PE=3 SV=1
          Length = 450

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 1   EAREDLAALEKDY 39
           EAREDLAALEKDY
Sbjct: 420 EAREDLAALEKDY 432
tr_hit_id A4C0E7
Definition tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacter irgensii 23-P
Align length 51
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945403|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D05, 5'
         (280 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacte...    36   1.1  
tr|A8UM99|A8UM99_9FLAO Proton/glutamate symporter OS=Flavobacter...    34   3.2  
tr|A2U271|A2U271_9FLAO C4-dicarboxylate transport protein 2 OS=P...    34   4.2  
tr|A9DVS6|A9DVS6_9FLAO Chorismate synthase OS=Kordia algicida OT...    33   9.4  

>tr|A4C0E7|A4C0E7_9FLAO Proton/glutamate symporter OS=Polaribacter
           irgensii 23-P GN=PI23P_09690 PE=4 SV=1
          Length = 442

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 266 LFGFLLI-----DKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
           + GF LI      K  PL+FLK  SP QLL F T +S  T P    +  +H
Sbjct: 248 MIGFYLILVSVYTKKSPLWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 298


>tr|A8UM99|A8UM99_9FLAO Proton/glutamate symporter
           OS=Flavobacteriales bacterium ALC-1 GN=FBALC1_08538 PE=4
           SV=1
          Length = 441

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 248 IDKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
           I K  P +FLK  SP QLL F T +S  T P    +  +H
Sbjct: 260 ITKKNPFWFLKQMSPAQLLAFSTSSSAATLPVTMERVEEH 299


>tr|A2U271|A2U271_9FLAO C4-dicarboxylate transport protein 2
           OS=Polaribacter sp. MED152 GN=MED152_02010 PE=4 SV=1
          Length = 441

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 266 LFGFLLI-----DKTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
           + GF L+      K  P++FLK  SP QLL F T +S  T P    +  +H
Sbjct: 248 MIGFYLLLVSVYTKKSPVWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 298


>tr|A9DVS6|A9DVS6_9FLAO Chorismate synthase OS=Kordia algicida OT-1
           GN=KAOT1_03592 PE=4 SV=1
          Length = 482

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 242 KTKPLYFLKYHSPNQLLLFHTHTSKHTSPTVNAKQSQH 129
           K  P +FLK  SP QLL F T +S  T P    +  +H
Sbjct: 302 KKSPFWFLKQISPAQLLAFSTSSSAATLPVTMERVEEH 339