NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945410
Clone id YMU02A01NGRL0009_D14
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_D14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTGGAAGAGCTACCTGAAGCGGAGTTGGAGTCTTTGCTGGCCCAAGTTGAAGAGGAAAAG
CAGCAACTAAAAGCAAGACGAGCGAAAATGTCTAAACCTGAATAGAGATGTGAATAACTG
GGCAATTTTCATGTATGATATCCCCGTCACTTTGAAAGTGATGGGGGCCGTTTATGGTCG
AAGTATAAAAGGCTTACCTTTTGTCCTCCTTCCTCATTGTTCAGTTAATGGCAAGGCCAA
ATTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q1XDL3
Definition sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra yezoensis
Align length 20
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945410|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D14, 5'
         (246 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra ...    31   2.2  
sp|Q0ULD0|NACB_PHANO Nascent polypeptide-associated complex subu...    30   2.9  
sp|Q2U6N1|NACB_ASPOR Nascent polypeptide-associated complex subu...    29   6.4  
sp|A2R091|NACB_ASPNC Nascent polypeptide-associated complex subu...    29   6.4  
sp|Q7SDU4|NACB_NEUCR Nascent polypeptide-associated complex subu...    29   8.3  
sp|A4RC23|NACB_MAGGR Nascent polypeptide-associated complex subu...    29   8.3  

>sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra
          yezoensis GN=ycf36 PE=3 SV=1
          Length = 165

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 14 LKRSWSLCWPKLKRKSSN*K 73
          LK SW  CWP L R+S N K
Sbjct: 23 LKNSWFFCWPTLSRRSYNKK 42


>sp|Q0ULD0|NACB_PHANO Nascent polypeptide-associated complex subunit
           beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1
          Length = 160

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -3

Query: 157 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 38
           F+SDG++IH + P +H S+   TF++        +  LV     QLGP
Sbjct: 60  FKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGP 107


>sp|Q2U6N1|NACB_ASPOR Nascent polypeptide-associated complex subunit
           beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1
          Length = 196

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 157 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 38
           F+ DG++IH   P +H S+   TF+L        +  LV     QLGP
Sbjct: 101 FKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGP 148


>sp|A2R091|NACB_ASPNC Nascent polypeptide-associated complex subunit
           beta OS=Aspergillus niger (strain CBS 513.88 / FGSC
           A1513) GN=egd1 PE=3 SV=1
          Length = 155

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 157 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 38
           F+ DG++IH   P +H S+   TF+L        +  LV     QLGP
Sbjct: 60  FKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGP 107


>sp|Q7SDU4|NACB_NEUCR Nascent polypeptide-associated complex subunit
           beta OS=Neurospora crassa GN=egd-1 PE=3 SV=2
          Length = 152

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = -3

Query: 157 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 38
           F+SDG++IH   P +H ++   TF++        +  LV     QLGP
Sbjct: 63  FKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGP 110


>sp|A4RC23|NACB_MAGGR Nascent polypeptide-associated complex subunit
           beta OS=Magnaporthe grisea GN=EGD1 PE=3 SV=1
          Length = 153

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = -3

Query: 157 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 38
           F+SDG++IH   P +H ++   TF++        +  LV     QLGP
Sbjct: 62  FKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGP 109
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945410|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D14, 5'
         (246 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******