NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945415
Clone id YMU02A01NGRL0009_D20
Library
Length 231
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_D20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAG
TAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAATTAGCATGGGGCACGCAAAATCCC
GTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAG
CAGTACCGTGAGGGAAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q1LY77
Definition sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio
Align length 48
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945415|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D20, 5'
         (201 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-...    30   3.8  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    29   8.4  
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     29   8.4  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    29   8.4  

>sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-A
           OS=Danio rerio GN=setd1ba PE=1 SV=2
          Length = 1844

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 15  LGEAVECCTPD------GDSPVAGSTASSRSNPISMGHAKSRVNQRGP 140
           L EA+  C P       G S VAG+T S  + P+S+  A S + Q  P
Sbjct: 252 LAEALMACEPSRRLFEGGSSVVAGTTPSGTNTPMSLDTAYSSLRQDTP 299


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  CTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPP 143
           C P G    AG+ AS+ +   + GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAATT-TPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 182  CFAIGHSGIFSLTRWSSLIHTGFCVPHANWVGA*ASCTSGYWTI 51
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  CTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPP 143
           C P G    AG+ AS+ +   + GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAATT-TPGHGVHRVEPRGPP 68
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 54
Score (bit) 86.7
E-value 5.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945415|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_D20, 5'
         (201 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    87   5e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    87   5e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    87   5e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    87   5e-16
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    72   1e-11
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    54   1e-09
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            63   8e-09
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    59   1e-07
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    59   2e-07
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    57   4e-07
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    56   8e-07
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    56   1e-06
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    55   2e-06
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    53   9e-06
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    52   2e-05
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    46   8e-04
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    45   0.001
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            45   0.001
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    43   0.007
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    43   0.009
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    43   0.009
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    43   0.009
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    42   0.015
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    42   0.015
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    42   0.015
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    42   0.015
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    42   0.015
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    42   0.015

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 40/54 (74%), Positives = 45/54 (83%)
 Frame = +3

Query: 27  VECCTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 188
           +ECCT DG+SPVA S  S RS+P SMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 40/54 (74%), Positives = 45/54 (83%)
 Frame = +3

Query: 27  VECCTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 188
           +ECCT DG+SPVA S  S RS+P SMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 40/54 (74%), Positives = 45/54 (83%)
 Frame = +3

Query: 27  VECCTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 188
           +ECCT DG+SPVA S  S RS+P SMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 40/54 (74%), Positives = 45/54 (83%)
 Frame = +3

Query: 27  VECCTPDGDSPVAGSTASSRSNPISMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 188
           +ECCT DG+SPVA S  S RS+P SMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/47 (72%), Positives = 39/47 (82%)
 Frame = +3

Query: 48  GDSPVAGSTASSRSNPISMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 188
           G+SPV+ S  S RS+P SMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 53.9 bits (128), Expect(2) = 1e-09
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = -2

Query: 194 PSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHA 99
           PSRY FAI H  +FSL RWS LIHTGF VPHA
Sbjct: 240 PSRYYFAISHPEVFSLARWSLLIHTGFHVPHA 271



 Score = 32.3 bits (72), Expect(2) = 1e-09
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = -3

Query: 79  LAVLPATGLSPSGVQHSTASPSKT 8
           L +L ATG SPS VQH  ASPS T
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNT 297


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 29/38 (76%), Positives = 30/38 (78%)
 Frame = -2

Query: 197 FPSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHANWVGA 84
           FPSRY FAIGH G+FSL RWS LIHTGF VPHA  V A
Sbjct: 7   FPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -3

Query: 199 PFPHGTASLSVTQEYLALQGGPR*FTRDFACPMLIGLERELAVLPATGLSPS 44
           PFPHGT SLSV++EYLA +GGP  F +DF CP L+      +    TGLSP+
Sbjct: 30  PFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -3

Query: 199 PFPHGTASLSVTQEYLALQGGPR*FTRDFACPMLIGLERELAVLPATGLSPS 44
           PFPHGT+SLSVT+EYL L+ GP  F +DF CP L+  +        TGLSP+
Sbjct: 106 PFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
           OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
          Length = 171

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 30/51 (58%), Positives = 34/51 (66%)
 Frame = -3

Query: 199 PFPHGTASLSVTQEYLALQGGPR*FTRDFACPMLIGLERELAVLPATGLSP 47
           PFPHGT SLSV+QEYLAL+ GP  F +D  CP L  L+  L     TGLSP
Sbjct: 22  PFPHGTGSLSVSQEYLALEDGPPIFRQDITCPAL--LDFTLDEASVTGLSP 70