DK945419 |
Clone id |
YMU02A01NGRL0009_E03 |
Library |
YMU02 |
Length |
583 |
Definition |
Adiantum capillus-veneris rbcL mRNA for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit , partial cds |
Accession |
DK945419 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2034Contig1 |
Sequence |
GAAGCAGTGGTATCAACGCAGATTGGCCATTACGGCCGGGGATTCTTATTTGTAGCAGAA GCTCTCTTCAAATCCCAGGCCGAAACCGGCGAAATCAAGGGACATTACTTGAATGCCACT GCGGGTACGTGTGAAGAGATGATGAAAAGAGCTGTTTTTGCTAGAGAATTGGGTGCACCA ATTGTCATGCATGACTACCTGACGGGGGGGTTTACTGCAAATACCAGCTTAGCCTTCTAC TGCAGAGACAATGGGCTACTTCTGCACATCCACAGGGCGATGCATGCTGTCATCGATAGA CAGAAAAATCACGGTATACATTTTCGTGTATTAGCCAAGGCATTACGCATGTCCGGTGGA GATCACATCCATGCTGGAACTGTAGTGGGCAAATTGGAAGGCGAACGAGAAGTTACCCTA GGATTTGTCGACTTACTCCGCGACGATTACATTGAAAAGGATCGTAGCCGTGGCATCTAT TTTACCCAAGATTGGGTATCCATGCCAGGTGTATTCCCCGTAGCTTCGGGAGGTATCCAC GTTTGGCACATGCCTGCCTTAACCGAAATTTTTGGGGATGACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P36476 |
Definition |
sp|P36476|RBL_ADICA Ribulose bisphosphate carboxylase large chain OS=Adiantum capillus-veneris |
Align length |
180 |
Score (bit) |
372.0 |
E-value |
1.0e-103 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A0ERI9 |
Definition |
tr|A0ERI9|A0ERI9_ADICA Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adiantum capillus-veneris |
Align length |
180 |
Score (bit) |
372.0 |
E-value |
1.0e-102 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945419|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_E03, 5' (543 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A0ERI9|A0ERI9_ADICA Ribulose bisphosphate carboxylase large c... 372 e-102 tr|Q32152|Q32152_9FILI Ribulose bisphosphate carboxylase large c... 370 e-101 tr|B7P040|B7P040_9FILI Ribulose-1,5-bisphosphate carboxylase/oxy... 370 e-101 tr|B1NFY4|B1NFY4_9FILI Ribulose bisphosphate carboxylase large c... 370 e-101 tr|Q9BAT0|Q9BAT0_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q6WUD8|Q6WUD8_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q4VWQ9|Q4VWQ9_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q36297|Q36297_MARQU Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q32822|Q32822_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q32595|Q32595_MARMC Ribulose bisphosphate carboxylase large c... 369 e-101 tr|B8YGX7|B8YGX7_MARVE Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B8YGT0|B8YGT0_MARMC Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B8YGS8|B8YGS8_MARMC Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B8YGS6|B8YGS6_MARMC Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B8YGR9|B8YGR9_MARAN Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B7SDJ2|B7SDJ2_9FILI Ribulose-1,5-bisphosphate carboxylase/oxy... 369 e-101 tr|B1NFU5|B1NFU5_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|A7TW17|A7TW17_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|A4K9R6|A4K9R6_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|A4K9R5|A4K9R5_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|A4K9R0|A4K9R0_MARMC Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q6WUG8|Q6WUG8_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q6WUG4|Q6WUG4_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q6WUE5|Q6WUE5_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q1H959|Q1H959_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q1H919|Q1H919_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q0GN12|Q0GN12_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q0GN06|Q0GN06_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|A7DWC5|A7DWC5_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101 tr|Q8HUL4|Q8HUL4_9FILI Ribulose bisphosphate carboxylase large c... 369 e-101
>tr|A0ERI9|A0ERI9_ADICA Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adiantum capillus-veneris GN=rbcL PE=3 SV=1 Length = 427
Score = 372 bits (954), Expect = e-102 Identities = 180/180 (100%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 199 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 258
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 259 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 318
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 319 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 378
>tr|Q32152|Q32152_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dennstaedtia sp. Wolf 623 GN=rbcL PE=3 SV=1 Length = 440
Score = 370 bits (951), Expect = e-101 Identities = 179/180 (99%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 208 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 267
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 268 TSLAFYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 327
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 328 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 387
>tr|B7P040|B7P040_9FILI Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Acrorumohra diffracta GN=rbcL PE=4 SV=1 Length = 437
Score = 370 bits (951), Expect = e-101 Identities = 179/180 (99%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 206 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 265
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 266 TSLAFYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 325
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 326 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 385
>tr|B1NFY4|B1NFY4_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Lastreopsis hispida GN=rbcL PE=3 SV=1 Length = 436
Score = 370 bits (951), Expect = e-101 Identities = 179/180 (99%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 209 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 268
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 269 TSLAFYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 328
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 329 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 388
>tr|Q9BAT0|Q9BAT0_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dryopteris submontana GN=rbcL PE=3 SV=1 Length = 421
Score = 369 bits (948), Expect = e-101 Identities = 178/180 (98%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 178 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 237
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLA+YCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 238 TSLAYYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 297
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 298 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 357
>tr|Q6WUD8|Q6WUD8_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dryopteris pallida GN=rbcL PE=3 SV=1 Length = 437
Score = 369 bits (948), Expect = e-101 Identities = 178/180 (98%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 205 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 264
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLA+YCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 265 TSLAYYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 324
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 325 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 384
>tr|Q4VWQ9|Q4VWQ9_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cheilanthes grisea GN=rbcL PE=3 SV=1 Length = 438
Score = 369 bits (948), Expect = e-101 Identities = 178/180 (98%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEM+KRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 208 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMLKRAVFARELGAPIVMHDYLTGGFTAN 267
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQ+NHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 268 TSLAFYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 327
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 328 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 387
>tr|Q36297|Q36297_MARQU Ribulose bisphosphate carboxylase large chain (Fragment) OS=Marsilea quadrifolia GN=rbcL PE=3 SV=1 Length = 461
Score = 369 bits (948), Expect = e-101 Identities = 179/180 (99%), Positives = 179/180 (99%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 218 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 277
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 278 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 337
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGV PVASGGIHVWHMPALTEIFGDD Sbjct: 338 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVLPVASGGIHVWHMPALTEIFGDD 397
>tr|Q32822|Q32822_9FILI Ribulose bisphosphate carboxylase large chain (Fragment) OS=Polypodium glaberulum GN=rbcL PE=3 SV=1 Length = 441
Score = 369 bits (948), Expect = e-101 Identities = 178/180 (98%), Positives = 180/180 (100%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 209 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 268
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQ+NHG+HFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 269 TSLAFYCRDNGLLLHIHRAMHAVIDRQRNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEG 328
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD Sbjct: 329 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 388
>tr|Q32595|Q32595_MARMC Ribulose bisphosphate carboxylase large chain (Fragment) OS=Marsilea macropoda GN=rbcL PE=3 SV=1 Length = 437
Score = 369 bits (948), Expect = e-101 Identities = 179/180 (99%), Positives = 179/180 (99%) Frame = +3
Query: 3 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 182 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN Sbjct: 200 FLFVAEALFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGAPIVMHDYLTGGFTAN 259
Query: 183 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 362 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG Sbjct: 260 TSLAFYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAGTVVGKLEG 319
Query: 363 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVFPVASGGIHVWHMPALTEIFGDD 542 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGV PVASGGIHVWHMPALTEIFGDD Sbjct: 320 EREVTLGFVDLLRDDYIEKDRSRGIYFTQDWVSMPGVLPVASGGIHVWHMPALTEIFGDD 379
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