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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945420
Clone id YMU02A01NGRL0009_E04
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_E04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGTGGTCGTCGATATTAAAGA
ACCTGAGGTTGCTGCTCCTGTGGGAAACCCTATGGATAATTCTGGATATGGTTATTAAGG
TACTGGCTGGAAAAGGATGTAAGCCTTTTTAAAACCGTTTCTGATGCTGATGCTCCACAT
TGATAGAAGTGATTGCAGATGACAGTCCTATCGCTTGGTTGCCTTAGTACGAGATATTTT
TCCAATCAGCGAGCTTTAGTTAGTCAGGTACTTAGGGTGCAAAGCGGTTTTTCTGCATCT
GTAATGATTGTTCTGAACCTCTTGTCAAATTGAAAGAGGGTCCTAGAATATCATGTATTC
TTCAGTTTAGGCTGGATCGCTTGGAAACCTTTTTAATTGTTGCAATGAGTGCTCATTTGA
TTGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P21240
Definition sp|P21240|RUBB_ARATH RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana
Align length 25
Score (bit) 44.7
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945420|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E04, 5'
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21240|RUBB_ARATH RuBisCO large subunit-binding protein subun...    45   1e-04
sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit...    44   2e-04
sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subun...    43   4e-04

>sp|P21240|RUBB_ARATH RuBisCO large subunit-binding protein subunit
           beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490
           PE=1 SV=3
          Length = 600

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE   PVGNPMDNSGYGY
Sbjct: 577 VVVEIKEPE-PVPVGNPMDNSGYGY 600


>sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit
           beta, chloroplastic OS=Pisum sativum PE=1 SV=2
          Length = 595

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYG 72
           VVV+IKEPE +APVGNPMDNSGYG
Sbjct: 571 VVVEIKEPE-SAPVGNPMDNSGYG 593


>sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit
           beta, chloroplastic (Fragment) OS=Secale cereale
           GN=CPN60 PE=2 SV=1
          Length = 499

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE AAP+ NPMDNSG+GY
Sbjct: 476 VVVEIKEPE-AAPLANPMDNSGFGY 499
tr_hit_id Q56ZP2
Definition tr|Q56ZP2|Q56ZP2_ARATH RuBisCO subunit binding-protein beta subunit (Fragment) OS=Arabidopsis thaliana
Align length 25
Score (bit) 48.9
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945420|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E04, 5'
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q56ZP2|Q56ZP2_ARATH RuBisCO subunit binding-protein beta subu...    49   1e-04
tr|Q0WRG9|Q0WRG9_ARATH RuBisCO subunit binding-protein beta subu...    49   1e-04
tr|Q6B7Q9|Q6B7Q9_MAIZE RuBisCo subunit binding-protein beta subu...    46   0.001
tr|A9PF58|A9PF58_POPTR Putative uncharacterized protein OS=Popul...    44   0.004
tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subs...    43   0.007
tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii...    43   0.007
tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum tub...    43   0.007
tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.007
tr|Q9FHA9|Q9FHA9_ARATH RuBisCO subunit binding-protein beta subu...    43   0.009
tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea...    41   0.026
tr|Q9LJE4|Q9LJE4_ARATH GloEL protein; chaperonin, 60 kDa OS=Arab...    41   0.034
tr|Q6ZFJ9|Q6ZFJ9_ORYSJ Os02g0102900 protein OS=Oryza sativa subs...    41   0.034
tr|B8AGV6|B8AGV6_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|A3A263|A3A263_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.034
tr|Q75RX3|Q75RX3_IPONI 60 kDa chaperonin beta subunit-like prote...    40   0.045
tr|B8LPP5|B8LPP5_PICSI Putative uncharacterized protein OS=Picea...    40   0.076
tr|A9TNZ2|A9TNZ2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A7P765|A7P765_VITVI Chromosome chr9 scaffold_7, whole genome ...    38   0.29 
tr|B4J5P2|B4J5P2_DROGR GH21647 OS=Drosophila grimshawi GN=GH2164...    37   0.38 
tr|A9RLL2|A9RLL2_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  

>tr|Q56ZP2|Q56ZP2_ARATH RuBisCO subunit binding-protein beta subunit
           (Fragment) OS=Arabidopsis thaliana GN=At5g56500 PE=2
           SV=1
          Length = 173

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE AAP GNPMDNSGYG+
Sbjct: 149 VVVEIKEPESAAPAGNPMDNSGYGF 173


>tr|Q0WRG9|Q0WRG9_ARATH RuBisCO subunit binding-protein beta subunit
           OS=Arabidopsis thaliana GN=At5g56500 PE=2 SV=1
          Length = 597

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE AAP GNPMDNSGYG+
Sbjct: 573 VVVEIKEPESAAPAGNPMDNSGYGF 597


>tr|Q6B7Q9|Q6B7Q9_MAIZE RuBisCo subunit binding-protein beta subunit
           (Fragment) OS=Zea mays PE=2 SV=1
          Length = 409

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/25 (88%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVVDIKEPE A PV NPMDNSGYGY
Sbjct: 386 VVVDIKEPE-ATPVANPMDNSGYGY 409


>tr|A9PF58|A9PF58_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 607

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE + P GNPMDNSGYGY
Sbjct: 584 VVVEIKEPE-SVPAGNPMDNSGYGY 607


>tr|Q9LWT6|Q9LWT6_ORYSJ Os06g0114000 protein OS=Oryza sativa subsp.
           japonica GN=P0541H01.20 PE=2 SV=1
          Length = 601

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE  APV NPMDNSGYGY
Sbjct: 578 VVVEIKEPE-PAPVTNPMDNSGYGY 601


>tr|Q0W9E2|Q0W9E2_SOLCO Beta chaperonin 60 OS=Solanum commersonii
           GN=cbn60 PE=2 SV=1
          Length = 600

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE AA  GNPMDNSGYGY
Sbjct: 577 VVVEIKEPE-AAVAGNPMDNSGYGY 600


>tr|P93570|P93570_SOLTU Chaperonin-60 beta subunit OS=Solanum
           tuberosum PE=2 SV=1
          Length = 599

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE AA  GNPMDNSGYGY
Sbjct: 576 VVVEIKEPE-AAVAGNPMDNSGYGY 599


>tr|A3B7Q6|A3B7Q6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019078 PE=3 SV=1
          Length = 609

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 21/25 (84%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVV+IKEPE  APV NPMDNSGYGY
Sbjct: 586 VVVEIKEPE-PAPVTNPMDNSGYGY 609


>tr|Q9FHA9|Q9FHA9_ARATH RuBisCO subunit binding-protein beta
           subunit; chaperonin, 60 kDa OS=Arabidopsis thaliana PE=3
           SV=1
          Length = 596

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSG 66
           VVV+IKEPE AAP GNPMDNSG
Sbjct: 573 VVVEIKEPESAAPAGNPMDNSG 594


>tr|A9NV22|A9NV22_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 617

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = +1

Query: 1   VVVDIKEPEVAAPVGNPMDNSGYGY 75
           VVVDIKEPE AA   NPMDNSGYGY
Sbjct: 594 VVVDIKEPEPAASP-NPMDNSGYGY 617