DK945421
Clone id YMU02A01NGRL0009_E06
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_E06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AGCACTTGGGGCTTTGCCAGCGCGAGGATTGCAGAGACGAGACGAGAGCGCGCGAGGAGA
TCTCTGCAGAGCAGAAGTGCAAGATATGGCAGATGGAGTCAGTGGAAAATACACCATAAA
AATACCAAAAAATGTGTACGAGAGACAATTGTACTATCAGAGTAAGATTGGCAATTACAC
TCATATGAAAGGCCCTTTTGATAAGATTGTCAGCTTCATCGTGCCACTAGCAATTGGAAC
TACAGCGGCTGCCATGATGGGACGTGGCCTCTGGAATCTGTCCAATGGAACTGGAAAGAA
AGAATGAGGTTGGAAGTACACATCATTTTATGATCATGGAAAGTTGGAAATAATTTTCTC
AGCTCACTTTACACCTTCAACAGTTTTTTTTTGGCCTTTGACTGAGCCTCTGTCTCTGTA
GTGAACTTTGCAGAATTTCATGTTGGAAGTCTCAATTTGAATAAATACATTTGTTGGTCC
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0ANP0
Definition sp|Q0ANP0|RL1_MARMM 50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10)
Align length 40
Score (bit) 31.6
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945421|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E06, 5'
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0ANP0|RL1_MARMM 50S ribosomal protein L1 OS=Maricaulis maris... 32 2.0
sp|Q2K9M7|RL1_RHIEC 50S ribosomal protein L1 OS=Rhizobium etli (... 31 2.6
sp|Q0BUR0|RL1_GRABC 50S ribosomal protein L1 OS=Granulibacter be... 31 2.6
sp|A1SEI7|RL1_NOCSJ 50S ribosomal protein L1 OS=Nocardioides sp.... 31 3.4
sp|Q5FTX4|RL1_GLUOX 50S ribosomal protein L1 OS=Gluconobacter ox... 31 3.4
sp|Q1MIF3|RL1_RHIL3 50S ribosomal protein L1 OS=Rhizobium legumi... 30 4.4
sp|Q1GK53|RL1_SILST 50S ribosomal protein L1 OS=Silicibacter sp.... 30 5.7
sp|Q28UY1|RL1_JANSC 50S ribosomal protein L1 OS=Jannaschia sp. (... 30 5.7
sp|P50028|GYRB_MYCCT DNA gyrase subunit B OS=Mycoplasma capricol... 30 5.7
sp|Q97EG6|RL1_CLOAB 50S ribosomal protein L1 OS=Clostridium acet... 30 7.5
sp|Q7V531|RL6_PROMM 50S ribosomal protein L6 OS=Prochlorococcus ... 29 9.8
sp|A9H3T0|RL1_GLUDA 50S ribosomal protein L1 OS=Gluconacetobacte... 29 9.8
sp|A5FZX4|RL1_ACICJ 50S ribosomal protein L1 OS=Acidiphilium cry... 29 9.8

>sp|Q0ANP0|RL1_MARMM 50S ribosomal protein L1 OS=Maricaulis maris
(strain MCS10) GN=rplA PE=3 SV=1
Length = 232

Score = 31.6 bits (70), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2

Query: 179 THMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
++ K FD+ + + L + A M RG+ NL NGTG+
Sbjct: 32 SNAKAKFDETIELAINLGVDPRHADQMVRGVCNLPNGTGR 71


>sp|Q2K9M7|RL1_RHIEC 50S ribosomal protein L1 OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1
Length = 233

Score = 31.2 bits (69), Expect = 2.6
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2

Query: 98 VSGKYTIKIPKNVYERQLY-YQSKIGNYTHMK-GPFDKIVSFIVPLAIGTTAAAMMGRGL 271
++GK T KI + V +LY + IG FD+ + + L + A M RG+
Sbjct: 1 MAGKRTRKINEGVDPTKLYALTTAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGV 60

Query: 272 WNLSNGTGK 298
NL NGTG+
Sbjct: 61 VNLPNGTGR 69


>sp|Q0BUR0|RL1_GRABC 50S ribosomal protein L1 OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA
PE=3 SV=1
Length = 230

Score = 31.2 bits (69), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2

Query: 179 THMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
T+ + FD+ + + L I A M RGL +L NGTGK
Sbjct: 31 TNARAKFDETIEISLNLGIDPRHADQMVRGLVSLPNGTGK 70


>sp|A1SEI7|RL1_NOCSJ 50S ribosomal protein L1 OS=Nocardioides sp.
(strain BAA-499 / JS614) GN=rplA PE=3 SV=2
Length = 240

Score = 30.8 bits (68), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2

Query: 179 THMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
T K FD+ V ++ L + A M RG NL +GTGK
Sbjct: 31 TSSKKKFDETVDVVMRLGVDPRKADQMVRGTVNLPHGTGK 70


>sp|Q5FTX4|RL1_GLUOX 50S ribosomal protein L1 OS=Gluconobacter
oxydans GN=rplA PE=3 SV=1
Length = 230

Score = 30.8 bits (68), Expect = 3.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2

Query: 179 THMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
++ K FD+ + + L I A M RGL +L NGTGK
Sbjct: 31 SNAKAKFDETIEISLNLGIDPRHADQMVRGLISLPNGTGK 70


>sp|Q1MIF3|RL1_RHIL3 50S ribosomal protein L1 OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1
Length = 233

Score = 30.4 bits (67), Expect = 4.4
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2

Query: 98 VSGKYTIKIPKNVYERQLYYQS-KIGNYTHMK-GPFDKIVSFIVPLAIGTTAAAMMGRGL 271
++GK T KI + V +LY + IG FD+ + + L + A M RG+
Sbjct: 1 MAGKRTQKINEGVDPTKLYALTLAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGV 60

Query: 272 WNLSNGTGK 298
NL NGTG+
Sbjct: 61 VNLPNGTGR 69


>sp|Q1GK53|RL1_SILST 50S ribosomal protein L1 OS=Silicibacter sp.
(strain TM1040) GN=rplA PE=3 SV=1
Length = 232

Score = 30.0 bits (66), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2

Query: 197 FDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
FD+ V + L + T A M RG+ L NGTGK
Sbjct: 38 FDETVEIAMNLGVDTRHADQMVRGVVGLPNGTGK 71


>sp|Q28UY1|RL1_JANSC 50S ribosomal protein L1 OS=Jannaschia sp.
(strain CCS1) GN=rplA PE=3 SV=1
Length = 232

Score = 30.0 bits (66), Expect = 5.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2

Query: 188 KGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
K FD+ + + L + A M RG NL NGTGK
Sbjct: 35 KTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGK 71


>sp|P50028|GYRB_MYCCT DNA gyrase subunit B OS=Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 /
NCTC 10154) GN=gyrB PE=3 SV=2
Length = 643

Score = 30.0 bits (66), Expect = 5.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2

Query: 38 RDESARGDLCRAEVQDMADGVSGKYTIKIPKNVYERQLYYQSKIG 172
+D+ D + + D+ +G+ T+KIP+N+ E + +SK+G
Sbjct: 297 KDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLG 341


>sp|Q97EG6|RL1_CLOAB 50S ribosomal protein L1 OS=Clostridium
acetobutylicum GN=rplA PE=3 SV=1
Length = 229

Score = 29.6 bits (65), Expect = 7.5
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2

Query: 104 GKYTIKIPKNVYERQLYYQSKIGNYT--HMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWN 277
GK I+ K V + LY + + K FD+ V V L + A RG+
Sbjct: 2 GKKYIESAKLVDKNTLYAPDEAVDLVVKTSKAKFDETVELAVRLGVDPRHADQQVRGVVI 61

Query: 278 LSNGTGKK 301
L NGTGKK
Sbjct: 62 LPNGTGKK 69


tr_hit_id A9NT91
Definition tr|A9NT91|A9NT91_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 62
Score (bit) 68.2
E-value 2.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945421|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_E06, 5'
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NT91|A9NT91_PICSI Putative uncharacterized protein OS=Picea... 68 2e-10
tr|A9NRV8|A9NRV8_PICSI Putative uncharacterized protein OS=Picea... 68 2e-10
tr|A9PAD6|A9PAD6_POPTR Putative uncharacterized protein OS=Popul... 62 1e-08
tr|A9PB26|A9PB26_POPTR Putative uncharacterized protein OS=Popul... 60 4e-08
tr|A7PQG6|A7PQG6_VITVI Chromosome chr6 scaffold_25, whole genome... 60 7e-08
tr|Q944S8|Q944S8_ARATH Putative uncharacterized protein (Putativ... 59 2e-07
tr|Q8LCZ9|Q8LCZ9_ARATH Putative uncharacterized protein OS=Arabi... 57 3e-07
tr|Q6J4I2|Q6J4I2_9LAMI Putative COX VIIa-like protein (Fragment)... 57 3e-07
tr|Q7XIQ1|Q7XIQ1_ORYSJ Os07g0647500 protein OS=Oryza sativa subs... 56 1e-06
tr|B8B5D7|B8B5D7_ORYSI Putative uncharacterized protein OS=Oryza... 56 1e-06
tr|B6T2C0|B6T2C0_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 56 1e-06
tr|A3BMU8|A3BMU8_ORYSJ Putative uncharacterized protein OS=Oryza... 56 1e-06
tr|B6TTC1|B6TTC1_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 55 1e-06
tr|Q0E3P3|Q0E3P3_ORYSJ Os02g0162000 protein OS=Oryza sativa subs... 55 2e-06
tr|A3A3E7|A3A3E7_ORYSJ Putative uncharacterized protein OS=Oryza... 55 2e-06
tr|A2X175|A2X175_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-06
tr|B6U9L3|B6U9L3_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 54 4e-06
tr|A3B4R3|A3B4R3_ORYSJ Putative uncharacterized protein OS=Oryza... 54 4e-06
tr|Q6J4I1|Q6J4I1_9LAMI Putative COX VIIa-like protein (Fragment)... 52 1e-05
tr|B6SQE1|B6SQE1_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 51 2e-05
tr|B6T125|B6T125_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 51 3e-05
tr|A7NZF7|A7NZF7_VITVI Chromosome chr6 scaffold_3, whole genome ... 50 4e-05
tr|A5BPC7|A5BPC7_VITVI Putative uncharacterized protein OS=Vitis... 50 4e-05
tr|B6U1Q4|B6U1Q4_MAIZE COX VIIa-like protein OS=Zea mays PE=2 SV=1 50 6e-05
tr|B6UEL5|B6UEL5_MAIZE COX VIIa-like protein OS=Zea mays PE=4 SV=1 50 7e-05
tr|A9U4I1|A9U4I1_PHYPA Predicted protein (Fragment) OS=Physcomit... 47 6e-04
tr|A9PDN8|A9PDN8_POPTR Putative uncharacterized protein OS=Popul... 43 0.009
tr|A5ZJE9|A5ZJE9_9BACE Putative uncharacterized protein OS=Bacte... 37 0.37
tr|A8T144|A8T144_9VIBR Putative uncharacterized protein OS=Vibri... 36 1.1
tr|A7LZB2|A7LZB2_BACOV Putative uncharacterized protein OS=Bacte... 35 1.4

>tr|A9NT91|A9NT91_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 67

Score = 68.2 bits (165), Expect = 2e-10
Identities = 29/62 (46%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Frame = +2

Query: 122 IPKN-VYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
+P++ V+ +Q YYQ+ I +T++KGP+DKI S ++P+ + TA +M+GRG++N+S+G GK
Sbjct: 7 VPRDYVFRKQQYYQN-IRKHTYLKGPYDKITSVVIPITLAVTALSMIGRGIYNMSHGIGK 65

Query: 299 KE 304
KE
Sbjct: 66 KE 67


>tr|A9NRV8|A9NRV8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 126

Score = 68.2 bits (165), Expect = 2e-10
Identities = 29/62 (46%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Frame = +2

Query: 122 IPKN-VYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
+P++ V+ +Q YYQ+ I +T++KGP+DKI S ++P+ + TA +M+GRG++N+S+G GK
Sbjct: 66 VPRDYVFRKQQYYQN-IRKHTYLKGPYDKITSVVIPITLAVTALSMIGRGIYNMSHGIGK 124

Query: 299 KE 304
KE
Sbjct: 125 KE 126



Score = 47.4 bits (111), Expect = 4e-04
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +2

Query: 122 IPKN-VYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMG 262
+P++ V+ +Q YYQ+ I +T++KGP+DKI S ++P+ + TA +M+G
Sbjct: 7 VPRDYVFRKQQYYQN-IRKHTYLKGPYDKITSVVIPITLAVTALSMIG 53


>tr|A9PAD6|A9PAD6_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 68

Score = 62.0 bits (149), Expect = 1e-08
Identities = 27/59 (45%), Positives = 44/59 (74%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ + E+Q+Y+QS I +T++KGP DKI S +PLA+ + ++GRG++N+S+G GKKE
Sbjct: 11 EKLLEKQIYFQS-IHKHTYLKGPLDKITSVAIPLALAGSTLYLIGRGIYNMSHGIGKKE 68


>tr|A9PB26|A9PB26_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 68

Score = 60.5 bits (145), Expect = 4e-08
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ + E Q Y+QS I +T++KGP DK+ S +P+A T+ ++GRG++N+S+G GKKE
Sbjct: 11 EKLVEHQKYFQS-IHKHTYLKGPLDKVTSVAIPIAFAATSLFLIGRGIYNMSHGIGKKE 68


>tr|A7PQG6|A7PQG6_VITVI Chromosome chr6 scaffold_25, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022060001
PE=4 SV=1
Length = 67

Score = 59.7 bits (143), Expect = 7e-08
Identities = 25/59 (42%), Positives = 44/59 (74%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ ++E+Q ++QS I +T++KGP DKI S +P A+ T+ A++ +G++N+S+G GKKE
Sbjct: 10 ERLFEKQRFFQS-IHKHTYLKGPMDKITSVAIPAALAATSIALIAQGIYNMSHGIGKKE 67


>tr|Q944S8|Q944S8_ARATH Putative uncharacterized protein (Putative
uncharacterized protein At4g21105/F7J7.1)
(At4g21108/At4g21108) OS=Arabidopsis thaliana
GN=At4g21105/F7J7.1 PE=4 SV=1
Length = 68

Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ + E+Q +QS I +T++KGP DKI S +P+A+ ++ M+G G++N+SNG GKKE
Sbjct: 11 EKLLEKQRLFQS-IQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMSNGIGKKE 68


>tr|Q8LCZ9|Q8LCZ9_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=4 SV=1
Length = 68

Score = 57.4 bits (137), Expect = 3e-07
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ + E+Q +QS I +T++KGP DKI S +P+A ++ M+G G++N+SNG GKKE
Sbjct: 11 EKLLEKQRLFQS-IQRHTYLKGPMDKITSVAIPIAXAASSLYMIGTGIYNMSNGIGKKE 68


>tr|Q6J4I2|Q6J4I2_9LAMI Putative COX VIIa-like protein (Fragment)
OS=Pinguicula sp. Jobson 240 PE=2 SV=1
Length = 61

Score = 57.4 bits (137), Expect = 3e-07
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGK 298
+ + ERQ +QS I +T++KGP DK+ S +PLA+ +A ++GRG++N+SNG GK
Sbjct: 6 EKLLERQKVFQS-IHKHTYLKGPLDKVTSVAIPLAMAGSALFLIGRGIYNMSNGIGK 61


>tr|Q7XIQ1|Q7XIQ1_ORYSJ Os07g0647500 protein OS=Oryza sativa subsp.
japonica GN=OJ1316_A04.115 PE=4 SV=1
Length = 67

Score = 55.8 bits (133), Expect = 1e-06
Identities = 24/59 (40%), Positives = 44/59 (74%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ ++++Q Y+Q+ + +T++KG +D I S +PLA+ T+ M+GRG++N+S+G GKKE
Sbjct: 10 EKLFKQQQYFQN-LTKHTYLKGRYDVITSVAIPLALAGTSLFMIGRGVYNMSHGIGKKE 67


>tr|B8B5D7|B8B5D7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27104 PE=4 SV=1
Length = 152

Score = 55.8 bits (133), Expect = 1e-06
Identities = 24/59 (40%), Positives = 44/59 (74%)
Frame = +2

Query: 128 KNVYERQLYYQSKIGNYTHMKGPFDKIVSFIVPLAIGTTAAAMMGRGLWNLSNGTGKKE 304
+ ++++Q Y+Q+ + +T++KG +D I S +PLA+ T+ M+GRG++N+S+G GKKE
Sbjct: 95 EKLFKQQQYFQN-LTKHTYLKGRYDVITSVAIPLALAGTSLFMIGRGVYNMSHGIGKKE 152