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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945443
Clone id YMU02A01NGRL0009_F10
Library
Length 284
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_F10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTGCACCATCTACATCTCTACTCACCTGCTAAATTGTTCAGAAGGTTACTTGTGTGTGT
TTCTTGATAAACAAGGCAAAGACAGAATGCACGAAGGAGGAGGTCATGGAGGTCATCACT
AGATCCAGCCTCTTCTCCTACCCTCACTCTATACATATCATGAGTACGTGCTCGCTTTGA
GCGCTGAGCTCCCCTTCCTTCCTGTTTGTAAGTATTCGAATGTTCGAAAGGTGAATAAAG
TAGGCTAATATGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3YWZ0
Definition sp|Q3YWZ0|PRMA_SHISS Ribosomal protein L11 methyltransferase OS=Shigella sonnei (strain Ss046)
Align length 45
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945443|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F10, 5'
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3YWZ0|PRMA_SHISS Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|P0A8T4|PRMA_SHIFL Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q0T031|PRMA_SHIF8 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q32B79|PRMA_SHIDS Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q31W09|PRMA_SHIBS Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q1R669|PRMA_ECOUT Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|P0A8T1|PRMA_ECOLI Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|B1IQ33|PRMA_ECOLC Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|P0A8T2|PRMA_ECOL6 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q0TCJ7|PRMA_ECOL5 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|A1AGF9|PRMA_ECOK1 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|A8A570|PRMA_ECOHS Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|P0A8T3|PRMA_ECO57 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|A7ZSF3|PRMA_ECO24 Ribosomal protein L11 methyltransferase OS=...    30   4.8  
sp|Q09689|IF5_SCHPO Probable eukaryotic translation initiation f...    30   4.8  
sp|A6TES6|PRMA_KLEP7 Ribosomal protein L11 methyltransferase OS=...    29   6.3  

>sp|Q3YWZ0|PRMA_SHISS Ribosomal protein L11 methyltransferase
           OS=Shigella sonnei (strain Ss046) GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|P0A8T4|PRMA_SHIFL Ribosomal protein L11 methyltransferase
           OS=Shigella flexneri GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|Q0T031|PRMA_SHIF8 Ribosomal protein L11 methyltransferase
           OS=Shigella flexneri serotype 5b (strain 8401) GN=prmA
           PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|Q32B79|PRMA_SHIDS Ribosomal protein L11 methyltransferase
           OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|Q31W09|PRMA_SHIBS Ribosomal protein L11 methyltransferase
           OS=Shigella boydii serotype 4 (strain Sb227) GN=prmA
           PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|Q1R669|PRMA_ECOUT Ribosomal protein L11 methyltransferase
           OS=Escherichia coli (strain UTI89 / UPEC) GN=prmA PE=3
           SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|P0A8T1|PRMA_ECOLI Ribosomal protein L11 methyltransferase
           OS=Escherichia coli (strain K12) GN=prmA PE=1 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|B1IQ33|PRMA_ECOLC Ribosomal protein L11 methyltransferase
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|P0A8T2|PRMA_ECOL6 Ribosomal protein L11 methyltransferase
           OS=Escherichia coli O6 GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49


>sp|Q0TCJ7|PRMA_ECOL5 Ribosomal protein L11 methyltransferase
           OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
           GN=prmA PE=3 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 RVRVGEEAGSSDDLHDLLLRAFCLCLVYQETHTSNLLNNLAGE*R 16
           ++++     +++DL D L+ A  + + +Q+TH + +   L GE R
Sbjct: 5   QLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETR 49
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945443|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F10, 5'
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******