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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945444
Clone id YMU02A01NGRL0009_F11
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_F11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGTGACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGGCTAAATTAACTG
AAAGAAAAAAACTTTATCTTCGCAGAAAATATGTGTTTTCTTATTATTTCTCCAAAATTA
GAGGTAGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAGTGACGA
AGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGGGAGATA
AATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTGAACCT
CAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATTATT
GAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATATTTCCC
TAAGGGTTTTTTCCTGAAAAAAAAAAAAAAATAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945444|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F11, 5'
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   2.0  
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    30   4.4  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    30   4.4  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    30   4.4  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    30   5.7  
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c...    29   9.8  
sp|A6TBC5|HIS7_KLEP7 Histidine biosynthesis bifunctional protein...    29   9.8  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +1

Query: 217 LISTSGEINKEKNLWVDV*DS*LIVTEPQRI--------NLGKKVGINKSGFVKIIE 363
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 114 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITA 13
           W  NKKT+IF  DK + +  +  + DP   K+ A
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIA 609


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 114 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITA 13
           W  NKKT+IF  DK + +  +  + DP   K+ A
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIA 607


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 114 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITA 13
           W  NKKT+IF  DK + +  +  + DP   K+ A
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIA 608


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 114 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITA 13
           W  NKKT+IF  DK + +  +  + DP   K+ A
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIA 609


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
           cuniculus GN=MMP2 PE=2 SV=1
          Length = 662

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 114 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITA 13
           W  NKKT+IF  DK + +  +  + DP   ++ A
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIA 609


>sp|A6TBC5|HIS7_KLEP7 Histidine biosynthesis bifunctional protein
           hisB OS=Klebsiella pneumoniae subsp. pneumoniae (strain
           ATCC 700721 / MGH 78578) GN=hisB PE=3 SV=1
          Length = 355

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
 Frame = +1

Query: 208 ILGLISTSG----EINKEKNLWVD----V*DS*LIVTEPQRINLGKKVGINKSGFV 351
           +L  I+T G    E+N   +L++D    V D+ L + E  ++ LG K GIN+ GFV
Sbjct: 204 MLDQIATHGGFRMEVNVGGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFV 259
tr_hit_id Q54CB7
Definition tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 55
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945444|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F11, 5'
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.2  

>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 208 ILGLISTSGEINKEKNLWVDV*DS*LIVTEPQRINLGKKVGINKSGFVKIIEHLF 372
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796