NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945448
Clone id YMU02A01NGRL0009_F18
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_F18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTTCTGCAAACTATATAGCCATGTCTTCGTGCGGGAGCGGATGCAGCTGCGGTGCTAAC
TGCAGCTGTGGCAGTGGATGCAAGTGTGGTAAGAAGGTGTTTGACGAAACTGCCCTCGAT
GCCCCGAGGGAAGTGACGGTTGCTGGCTGTGCGTGCAGGTGTGGATCTAACTGCCAGTGC
GCCGACCCCTGTCCCTGTGCGCAAACCTCGAGCGGGGATGCTTGCAAGTGCGGTGCGAAC
TGTACCTGCAATCCCTGCAACTGCTGATTATGATCATGATTAGTACTAACTTGCGCCATG
TAGAAATTACCCTGTTGAAAGATGCGATGCACGCATAGGCAAGCATGATGGTATGGCTGT
CTGCTCGCCACTTGCTCCATCTTCATGTATCTTAGAAAGATAAATTTCACTTTTTGCTGG
TAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P43399
Definition sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium repens
Align length 21
Score (bit) 35.8
E-value 0.07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945448|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F18, 5'
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium ...    36   0.070
sp|Q41670|MT1B_VICFA Metallothionein-like protein 1B OS=Vicia fa...    36   0.070
sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Sola...    35   0.12 
sp|P20830|MT1_PEA Metallothionein-like protein 1 OS=Pisum sativu...    35   0.12 
sp|Q41669|MT1A_VICFA Metallothionein-like protein 1A OS=Vicia fa...    35   0.12 
sp|P55946|MT_ARIAR Metallothionein OS=Arianta arbustorum PE=1 SV=1     35   0.16 
sp|Q43512|MT2X_SOLLC Metallothionein-like protein type 2 OS=Sola...    35   0.16 
sp|Q40157|MT2A_SOLLC Metallothionein-like protein type 2 A OS=So...    35   0.16 
sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE...    34   0.20 
sp|Q43513|MT2Y_SOLLC Metallothionein-like protein type 2 OS=Sola...    34   0.20 
sp|P43402|MT54_BRANA Metallothionein-like protein LSC54 OS=Brass...    34   0.27 
sp|Q38804|MT1C_ARATH Metallothionein-like protein 1C OS=Arabidop...    34   0.27 
sp|P20238|MT1_MIMGU Metallothionein-like protein 1 OS=Mimulus gu...    33   0.35 
sp|Q54J58|Y7870_DICDI Uncharacterized protein DDB_G0288281 OS=Di...    33   0.60 
sp|Q40410|MT2_NICPL Metallothionein-like protein type 2 OS=Nicot...    33   0.60 
sp|P69164|MT2_BRARA Metallothionein-like protein type 2 OS=Brass...    33   0.60 
sp|P69163|MT22_BRAJU Metallothionein-like protein type 2, MT2-18...    33   0.60 
sp|P25860|MT2A_ARATH Metallothionein-like protein 2A OS=Arabidop...    32   0.78 
sp|O24528|MT1_FESRU Metallothionein-like protein 1 OS=Festuca ru...    32   0.78 
sp|O22319|MT2_MUSAC Metallothionein-like protein type 2 OS=Musa ...    32   1.0  
sp|Q39458|MT1_CICAR Metallothionein-like protein 1 OS=Cicer arie...    32   1.0  
sp|P23038|MT_CRAVI Metallothionein OS=Crassostrea virginica PE=1...    32   1.3  
sp|Q40158|MT2B_SOLLC Metallothionein-like protein type 2 B OS=So...    32   1.3  
sp|P37359|MT3_BOVIN Metallothionein-3 OS=Bos taurus GN=MT3 PE=1 ...    31   1.7  
sp|Q2MJS5|MT3_BOSMU Metallothionein-3 OS=Bos mutus grunniens GN=...    31   1.7  
sp|P80252|MT22_MYTED Metallothionein 20-II OS=Mytilus edulis PE=...    31   1.7  
sp|P80251|MT21_MYTED Metallothionein 20-I isoforms A and B OS=My...    31   1.7  
sp|Q39511|MT1_CASGL Metallothionein-like protein 1 OS=Casuarina ...    31   1.7  
sp|P43392|MT1A_ARATH Metallothionein-like protein 1A OS=Arabidop...    31   1.7  
sp|Q94550|MT_DREPO Metallothionein OS=Dreissena polymorpha PE=1 ...    31   2.3  

>sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium
           repens GN=MT1B PE=3 SV=1
          Length = 75

 Score = 35.8 bits (81), Expect = 0.070
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQTSSG 216
           C CGS+C C D C C + SSG
Sbjct: 4   CNCGSSCNCGDSCKCNKRSSG 24



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 DAPREVTVAGCACRCGSNCQCADPCPC 198
           DA   V      C+CGS+C C DPC C
Sbjct: 49  DAEMGVAAEDSGCKCGSSCTC-DPCNC 74


>sp|Q41670|MT1B_VICFA Metallothionein-like protein 1B OS=Vicia faba
           GN=MT1B PE=3 SV=1
          Length = 75

 Score = 35.8 bits (81), Expect = 0.070
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQTSSG 216
           C CGS+C C D C C + SSG
Sbjct: 4   CNCGSSCNCGDSCKCNKRSSG 24



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CG NC C DPC C
Sbjct: 61  CKCGDNCTC-DPCNC 74


>sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Solanum
           lycopersicum PE=3 SV=1
          Length = 84

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 130 EVTVAGCACRCGSNCQCADPCPCAQTSS 213
           + T  G  C+CGS+C+C DPC C   S+
Sbjct: 55  KATEGGNGCKCGSSCKC-DPCNCCSAST 81


>sp|P20830|MT1_PEA Metallothionein-like protein 1 OS=Pisum sativum
           GN=MTA PE=3 SV=1
          Length = 75

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQTSSG 216
           C CGS+C C D C C + SSG
Sbjct: 4   CGCGSSCNCGDSCKCNKRSSG 24



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CG NC C DPC C
Sbjct: 61  CKCGDNCTC-DPCNC 74


>sp|Q41669|MT1A_VICFA Metallothionein-like protein 1A OS=Vicia faba
           GN=MT1A PE=3 SV=1
          Length = 77

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQTSSG 216
           C CGS+C C D C C + SSG
Sbjct: 4   CGCGSSCNCGDSCKCNKRSSG 24


>sp|P55946|MT_ARIAR Metallothionein OS=Arianta arbustorum PE=1 SV=1
          Length = 66

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQ----TSSGDACK 228
           C+CGS CQC + C CA       + D CK
Sbjct: 18  CQCGSKCQCGEGCACASCKTCNCTSDGCK 46



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 145 GCACRCGSNCQCADPCPCAQTSSGDAC 225
           G  C+CG  C CA    C  TS G  C
Sbjct: 21  GSKCQCGEGCACASCKTCNCTSDGCKC 47


>sp|Q43512|MT2X_SOLLC Metallothionein-like protein type 2 OS=Solanum
           lycopersicum PE=3 SV=1
          Length = 72

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 130 EVTVAGCACRCGSNCQCADPCPC 198
           E   AG  C+CGSNC C DPC C
Sbjct: 51  EEKAAGEGCKCGSNCTC-DPCNC 72


>sp|Q40157|MT2A_SOLLC Metallothionein-like protein type 2 A
           OS=Solanum lycopersicum GN=MTA PE=2 SV=1
          Length = 72

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 130 EVTVAGCACRCGSNCQCADPCPC 198
           E   AG  C+CGSNC C DPC C
Sbjct: 51  EEKAAGEGCKCGSNCTC-DPCNC 72


>sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE=1
           SV=1
          Length = 66

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPCAQ----TSSGDACK 228
           C+CGS CQC + C CA       + D CK
Sbjct: 18  CQCGSKCQCGEGCTCAACKTCNCTSDGCK 46



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
 Frame = +1

Query: 145 GCACRCGSNCQCA---------DPCPCAQTSSG-DACK 228
           G  C+CG  C CA         D C C +  +G D+CK
Sbjct: 21  GSKCQCGEGCTCAACKTCNCTSDGCKCGKECTGPDSCK 58


>sp|Q43513|MT2Y_SOLLC Metallothionein-like protein type 2 OS=Solanum
           lycopersicum PE=3 SV=1
          Length = 73

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 130 EVTVAGCACRCGSNCQCADPCPC 198
           + T  G  C+CGSNC C DPC C
Sbjct: 52  KATEGGNGCKCGSNCTC-DPCNC 73
tr_hit_id A8QMV1
Definition tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians
Align length 42
Score (bit) 43.5
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945448|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F18, 5'
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians ...    44   0.005
tr|Q75NI4|Q75NI4_PHAAU Type 1 metallothionein OS=Phaseolus aureu...    32   0.11 
tr|Q75NI0|Q75NI0_PHAAN Type 1 metallothionein OS=Phaseolus angul...    32   0.11 
tr|B3VKV7|B3VKV7_SOLNI Type 2 metallothionein OS=Solanum nigrum ...    39   0.17 
tr|B3VKV6|B3VKV6_SOLNI Type 2 metallothionein OS=Solanum nigrum ...    38   0.22 
tr|Q6PML5|Q6PML5_POPJC Metallothionein 1b (Putative uncharacteri...    32   0.32 
tr|B3VKV5|B3VKV5_SOLNI Type 2 metallothionein OS=Solanum nigrum ...    37   0.37 
tr|Q6PML6|Q6PML6_POPJC Metallothionein 1a OS=Populus jackii GN=M...    32   0.42 
tr|A1Z0P1|A1Z0P1_9ROSI Metallothionein-like protein MT1A OS=Sali...    32   0.42 
tr|Q9ZSC6|Q9ZSC6_IPOBA Metallothionein-like type 1 protein OS=Ip...    36   1.1  
tr|Q4ZGB4|Q4ZGB4_IPOBA Metallothionein-like type 1 protein OS=Ip...    36   1.1  
tr|B8LFH0|B8LFH0_IPOBA Metallothionein-like protein OS=Ipomoea b...    36   1.1  
tr|Q2VT53|Q2VT53_CAPAN Metallothionein-like protein type 2 OS=Ca...    35   1.4  
tr|Q9SP23|Q9SP23_MEDSA Type 1 metallothionein OS=Medicago sativa...    35   1.8  
tr|Q8S3M2|Q8S3M2_AZOFI Metallothionein-like protein 2 OS=Azolla ...    35   1.8  
tr|Q75NH8|Q75NH8_VICFA Type 1 metallothionein OS=Vicia faba GN=M...    35   1.8  
tr|Q75NH7|Q75NH7_PEA Type 1 metallothionein OS=Pisum sativum GN=...    35   1.8  
tr|O22492|O22492_OENJA Metallothionein-1 like protein OS=Oenanth...    35   1.8  
tr|B5TGN7|B5TGN7_VICFA Metallothionein OS=Vicia faba PE=4 SV=1         35   1.8  
tr|A9NI06|A9NI06_POPAL Type 2 metallothionein (Fragment) OS=Popu...    35   1.8  
tr|Q94I87|Q94I87_ATRBE Putative metallothionein-like protein typ...    35   2.4  
tr|Q564N1|Q564N1_IPOBA Metallothionein-like type 2 protein OS=Ip...    35   2.4  
tr|Q4ZGB3|Q4ZGB3_IPOBA Metallothionein-like type 2 protein OS=Ip...    35   2.4  
tr|Q20BM7|Q20BM7_PANGI Metallothionein-like protein OS=Panax gin...    35   2.4  
tr|Q1W2K9|Q1W2K9_CAMSI Metallothionein-like protein OS=Camellia ...    35   2.4  
tr|B5Y3Z1|B5Y3Z1_PHATR Predicted protein OS=Phaeodactylum tricor...    35   2.4  
tr|A8DUB1|A8DUB1_SOLLC Metallothionein-like protein OS=Solanum l...    35   2.4  
tr|B5U0R0|B5U0R0_ANABR Metallothionein OS=Anadara broughtonii PE...    35   2.4  
tr|Q84SA5|Q84SA5_ASTTR Metallothionein 1 OS=Aster tripolium PE=4...    34   3.1  
tr|A9YTZ3|A9YTZ3_SOLTU Metallothionein-like protein OS=Solanum t...    34   3.1  

>tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians
           PE=2 SV=1
          Length = 145

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 100 FDETALDAPREVTVAGCACRCGSNCQCADPCPCAQTSSGDAC 225
           F   +   P  V   G AC+CG +C+C+D CPC    +G  C
Sbjct: 40  FSAKSSTCPDGVCQMGVACKCGGSCKCSDSCPCPNCKAGCKC 81


>tr|Q75NI4|Q75NI4_PHAAU Type 1 metallothionein OS=Phaseolus aureus
           GN=MET PE=4 SV=1
          Length = 73

 Score = 31.6 bits (70), Expect(2) = 0.11
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CGSNC C DPC C
Sbjct: 59  CKCGSNCTC-DPCNC 72



 Score = 26.9 bits (58), Expect(2) = 0.11
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 145 GCACRCGSNCQC 180
           G +C CGSNC C
Sbjct: 7   GSSCNCGSNCSC 18


>tr|Q75NI0|Q75NI0_PHAAN Type 1 metallothionein OS=Phaseolus
           angularis GN=MET PE=4 SV=1
          Length = 73

 Score = 31.6 bits (70), Expect(2) = 0.11
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CGSNC C DPC C
Sbjct: 59  CKCGSNCPC-DPCNC 72



 Score = 26.9 bits (58), Expect(2) = 0.11
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 145 GCACRCGSNCQC 180
           G +C CGSNC C
Sbjct: 7   GSSCNCGSNCSC 18


>tr|B3VKV7|B3VKV7_SOLNI Type 2 metallothionein OS=Solanum nigrum
           GN=MT2e PE=4 SV=1
          Length = 77

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 124 PREVTVAGCACRCGSNCQCADPCPC 198
           P+  T  G  C+CGSNC+C DPC C
Sbjct: 54  PKNATEGGNGCKCGSNCKC-DPCTC 77


>tr|B3VKV6|B3VKV6_SOLNI Type 2 metallothionein OS=Solanum nigrum
           GN=MT2d PE=4 SV=1
          Length = 77

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 124 PREVTVAGCACRCGSNCQCADPCPC 198
           P+  T  G  C+CGSNC+C DPC C
Sbjct: 54  PKNATEGGNGCKCGSNCKC-DPCNC 77


>tr|Q6PML5|Q6PML5_POPJC Metallothionein 1b (Putative uncharacterized
           protein) OS=Populus jackii GN=MT1b PE=4 SV=1
          Length = 73

 Score = 32.0 bits (71), Expect(2) = 0.32
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CGSNC C DPC C
Sbjct: 59  CKCGSNCTC-DPCTC 72



 Score = 25.0 bits (53), Expect(2) = 0.32
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 145 GCACRCGSNCQC 180
           G  C+CGS+C+C
Sbjct: 7   GSDCKCGSDCKC 18


>tr|B3VKV5|B3VKV5_SOLNI Type 2 metallothionein OS=Solanum nigrum
           GN=MT2c PE=4 SV=1
          Length = 77

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 124 PREVTVAGCACRCGSNCQCADPCPC 198
           P+  T  G  C+CGSNC C DPC C
Sbjct: 54  PKNATEGGNGCKCGSNCTC-DPCNC 77


>tr|Q6PML6|Q6PML6_POPJC Metallothionein 1a OS=Populus jackii GN=MT1a
           PE=4 SV=1
          Length = 73

 Score = 32.0 bits (71), Expect(2) = 0.42
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CGSNC C DPC C
Sbjct: 59  CKCGSNCTC-DPCSC 72



 Score = 24.6 bits (52), Expect(2) = 0.42
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 145 GCACRCGSNCQC 180
           G  C+CGS C+C
Sbjct: 7   GSDCKCGSGCKC 18


>tr|A1Z0P1|A1Z0P1_9ROSI Metallothionein-like protein MT1A OS=Salix
           matsudana PE=4 SV=1
          Length = 73

 Score = 32.0 bits (71), Expect(2) = 0.42
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CRCGSNCQCADPCPC 198
           C+CGSNC C DPC C
Sbjct: 59  CKCGSNCTC-DPCTC 72



 Score = 24.6 bits (52), Expect(2) = 0.42
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 145 GCACRCGSNCQC 180
           G  C+CGS+C+C
Sbjct: 7   GFDCKCGSDCKC 18


>tr|Q9ZSC6|Q9ZSC6_IPOBA Metallothionein-like type 1 protein
           OS=Ipomoea batatas GN=mt1k PE=4 SV=1
          Length = 66

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 130 EVTVAGCACRCGSNCQCADPCPC 198
           + T  G AC+CGSNC C DPC C
Sbjct: 45  KATEGGHACKCGSNCTC-DPCNC 66