NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945452
Clone id YMU02A01NGRL0009_F22
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_F22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATCGAATCTGACTTTTCCTTCGCTTCTCTTGTGGCGGGTGATTCGGGAGATACAGACGAA
GGATTGCTCAGCTGGGGCATGCGAGCGCAACTGGAGTGCATACTCTCTTATTCACACGAA
GATCCGCAATCGTCTTAGCACCAAGCAGTTAGAGAGACTGGTTTATTGCCGAGCTAACAT
GCGGCTTGTGCGCAGCTTTCATGCCTTGGGGACACCCAAGCAGGTGGATCCCACAGAGTT
GAAGATGGTGACAGATCCTACTGCGGAGGAGGTCGATGCACGGATTAGAGATGAGCAGGA
GGAGATCCTTCGAGAGTTGCACAGGGAGCTAGAGAGCGTGGATCGCCGGGTCACTAGATC
TCGCTCTCGAGCTTACAGTATTCCTCTTCGCATTGCTGCTGCAGATCCAGAGGTTGCACA
CAGAGAGAGCATTCGCAGAGGAAAGTTACCCGTTCGGCCTGCTCGTAGACGAGCCAATGA
GGCTGTTCAACTCATCCACACCCAGAGTTCAGAGGCTGATGATCCAGATGAGGGTGATGC
ACCCCTAGCATCTGTGCCAGAGGAGAGAGATCCCGATTATGATGATGAGGGCAATGTATT
GGCAGATGGAGACATGCTCTCTG
■■Homology search results ■■ -
sp_hit_id Q8N8W4
Definition sp|Q8N8W4|PLPL1_HUMAN Patatin-like phospholipase domain-containing protein 1 OS=Homo sapiens
Align length 117
Score (bit) 39.3
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945452|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F22, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N8W4|PLPL1_HUMAN Patatin-like phospholipase domain-containi...    39   0.017
sp|P13553|RLA0_HALSA Acidic ribosomal protein P0 homolog OS=Halo...    37   0.11 
sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing prot...    32   3.4  
sp|Q5RAC4|SLIK1_PONAB SLIT and NTRK-like protein 1 OS=Pongo abel...    30   7.7  
sp|Q2GCD8|RPOC_NOVAD DNA-directed RNA polymerase subunit beta' O...    30   7.7  
sp|Q9QXL2|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculu...    30   7.7  

>sp|Q8N8W4|PLPL1_HUMAN Patatin-like phospholipase domain-containing
           protein 1 OS=Homo sapiens GN=PNPLA1 PE=2 SV=2
          Length = 532

 Score = 39.3 bits (90), Expect = 0.017
 Identities = 31/117 (26%), Positives = 46/117 (39%)
 Frame = -1

Query: 557 AQMLGVHHPHLDHQPLNSGCG*VEQPHWLVYEQAERVTFLCECSLCVQPLDLQQQCEEEY 378
           A + G   PH +  P   G G    P   V +  + + F CE  +      L+Q      
Sbjct: 302 ASLEGATQPHKEWVPKGDGRGSHGPP---VSQPVQTLEFTCESPVSAPVSPLEQP----- 353

Query: 377 CKLESEI**PGDPRSLAPCATLEGSPPAHL*SVHRPPPQ*DLSPSSTLWDPPAWVSP 207
                    P  P + +   +L G PP    +VH+PP     +P S+L  PP  +SP
Sbjct: 354 ---------PAQPLASSTPLSLSGMPPVSFPAVHKPPSS---TPGSSLPTPPPGLSP 398


>sp|P13553|RLA0_HALSA Acidic ribosomal protein P0 homolog
           OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1
          Length = 352

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 395 AAADPEVAHRESIRRGKLPVRPARRRANEAV--QLIHTQSSEADDPDEGDAPLASVPEER 568
           A  D E A  E ++    P  PA   A+     Q   TQ+SEADD D+ D          
Sbjct: 283 AQIDDEDALPEELQDVDAPAAPAGGEADTTADEQSDETQASEADDADDSD---------- 332

Query: 569 DPDYDDEGNVLADG 610
           D D DD+GN  A+G
Sbjct: 333 DDDDDDDGNAGAEG 346


>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein
           1 OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1
          Length = 828

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 398 AADPEVAHRESIRRGKLPVR---PARRRANEAVQLIHTQSSEADDPDEGDAPLASVPEER 568
           AADP V+  + +R+ +  ++   P   R N      HT+S       +G+AP A+ P + 
Sbjct: 232 AADPGVSDMDWLRQRQTRIKEGEPEEDRENR-----HTESKSEGKKGKGNAPKAATPVDE 286

Query: 569 DPDYD 583
           +P  D
Sbjct: 287 EPSED 291


>sp|Q5RAC4|SLIK1_PONAB SLIT and NTRK-like protein 1 OS=Pongo abelii
           GN=SLITRK1 PE=2 SV=1
          Length = 696

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 7/152 (4%)
 Frame = -1

Query: 560 LAQMLGVHHPHLDHQPLNSGCG*VEQPHWL--VYEQAERVTFLCECSLCVQPLDLQQQCE 387
           L Q+ G+    L+  P +  C  +    WL  + + A     +CE    +Q  DL +  E
Sbjct: 198 LEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTE 257

Query: 386 EEYCKLESEI**PGDPRSLAPCATLEGSPPAHL*SVHRPPPQ*D-----LSPSSTLWDPP 222
           ++ C L++ +    D    AP A  E   P  L +  +   Q D      +P+     P 
Sbjct: 258 QDLCPLKNRV----DSSLPAPPAQEETFAPGPLPTPFKTNGQEDHATPGSAPNGGTKIPG 313

Query: 221 AWVSPRHESCAQAAC*LGNKPVSLTAWC*DDC 126
            W      + A A     NKP++ +  C   C
Sbjct: 314 NWQIKIRPTAAIATGSARNKPLANSLPCPGGC 345


>sp|Q2GCD8|RPOC_NOVAD DNA-directed RNA polymerase subunit beta'
            OS=Novosphingobium aromaticivorans (strain DSM 12444)
            GN=rpoC PE=3 SV=1
          Length = 1427

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 386  LRIAAADPEVAHRESIRR-GKLPVRPARRRANEAVQLIHTQSSEADDPDEGDAPLASVPE 562
            +R+AA+  + A R S R+  +  + PA      A +L     ++  +   GD PLA+V  
Sbjct: 1354 MRVAASSRDAALRASYRKLQESLIAPATAAEEHAAEL-----AQGPEAAIGDDPLATVEG 1408

Query: 563  ERDPDYDDEGNVLADGD 613
            E      D G+ L +GD
Sbjct: 1409 ETHGTDADAGDYLIEGD 1425


>sp|Q9QXL2|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus
            GN=Kif21a PE=1 SV=2
          Length = 1672

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 449  PVRPARRRANEAVQLIHTQSSE-ADDPDEGDA----PLASVPEERDPDYDDE--GNVLAD 607
            P   ARRR    ++L++  SSE A D   GDA    PLA V E ++   + E  G    D
Sbjct: 1151 PKNKARRRTTTQMELLYADSSEVASDTSAGDASLSGPLAPVAEGQEIGMNTETSGTSARD 1210

Query: 608  GDMLS 622
             ++L+
Sbjct: 1211 KELLA 1215
tr_hit_id A5AYJ1
Definition tr|A5AYJ1|A5AYJ1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 53
Score (bit) 65.9
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945452|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_F22, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AYJ1|A5AYJ1_VITVI Putative uncharacterized protein OS=Vitis...    66   2e-09
tr|A5BRC8|A5BRC8_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|A5AGV1|A5AGV1_VITVI Putative uncharacterized protein OS=Vitis...    64   7e-09
tr|A5AFZ8|A5AFZ8_VITVI Putative uncharacterized protein OS=Vitis...    64   7e-09
tr|A5AXF1|A5AXF1_VITVI Putative uncharacterized protein OS=Vitis...    62   3e-08
tr|A5ALP7|A5ALP7_VITVI Putative uncharacterized protein OS=Vitis...    62   4e-08
tr|Q2QSP1|Q2QSP1_ORYSJ HAT family dimerisation domain containing...    61   5e-08
tr|A5BW53|A5BW53_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A7QFJ7|A7QFJ7_VITVI Chromosome chr8 scaffold_88, whole genome...    60   1e-07
tr|A5BUL1|A5BUL1_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A5BH50|A5BH50_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|Q948G9|Q948G9_ORYSA Putative transposable element OS=Oryza sa...    59   2e-07
tr|Q60D97|Q60D97_ORYSJ Putative polyprotein OS=Oryza sativa subs...    59   2e-07
tr|Q2QMZ1|Q2QMZ1_ORYSJ HAT family dimerisation domain containing...    59   2e-07
tr|Q0JMB7|Q0JMB7_ORYSJ Os01g0516900 protein OS=Oryza sativa subs...    59   2e-07
tr|A5AJB9|A5AJB9_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5C861|A5C861_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BVU1|A5BVU1_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5AX25|A5AX25_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A7QY17|A7QY17_VITVI Chromosome undetermined scaffold_236, who...    59   3e-07
tr|A7PKJ9|A7PKJ9_VITVI Chromosome chr15 scaffold_19, whole genom...    59   3e-07
tr|A5BDB0|A5BDB0_VITVI Putative uncharacterized protein OS=Vitis...    59   3e-07
tr|A5AII9|A5AII9_VITVI Putative uncharacterized protein OS=Vitis...    59   3e-07
tr|A7Q5Q6|A7Q5Q6_VITVI Chromosome chr14 scaffold_54, whole genom...    58   4e-07
tr|A7PGQ6|A7PGQ6_VITVI Chromosome chr17 scaffold_16, whole genom...    58   4e-07
tr|A5BVC8|A5BVC8_VITVI Putative uncharacterized protein OS=Vitis...    58   4e-07
tr|A5AHD3|A5AHD3_VITVI Putative uncharacterized protein OS=Vitis...    58   4e-07
tr|A7QZI0|A7QZI0_VITVI Chromosome chr7 scaffold_275, whole genom...    58   5e-07
tr|A7QT07|A7QT07_VITVI Chromosome chr14 scaffold_164, whole geno...    58   5e-07
tr|A7QN52|A7QN52_VITVI Chromosome undetermined scaffold_130, who...    58   5e-07

>tr|A5AYJ1|A5AYJ1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035181 PE=4 SV=1
          Length = 851

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 29/53 (54%), Positives = 40/53 (75%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L ++  +I ++ CS+  CERNWS +SLIHTK+RNRL+ K+L +LVY   NMRL
Sbjct: 459 LQKIAVKILSQTCSSSGCERNWSTWSLIHTKLRNRLAMKKLHKLVYVHYNMRL 511


>tr|A5BRC8|A5BRC8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039957 PE=4 SV=1
          Length = 813

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 27/53 (50%), Positives = 41/53 (77%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L +++ ++ ++ CS+  CERNWS +SLIHTK+RNRL+ K+L +LVY   N+RL
Sbjct: 284 LQKIVIKVLSQTCSSSGCERNWSTWSLIHTKLRNRLAMKKLHKLVYVHYNVRL 336


>tr|A5AGV1|A5AGV1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015950 PE=4 SV=1
          Length = 938

 Score = 63.9 bits (154), Expect = 7e-09
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L ++  +I ++ CS+  CERNWS +SLIHTK+ NRL+ K+L +LVY   NMRL
Sbjct: 550 LXKIAVKILSQTCSSSGCERNWSTWSLIHTKLXNRLAMKKLHKLVYVHYNMRL 602


>tr|A5AFZ8|A5AFZ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043811 PE=4 SV=1
          Length = 956

 Score = 63.9 bits (154), Expect = 7e-09
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L ++  +I ++ CS+  CERNWS +SLIHTK+RN L+ K+L +LVY   NMRL
Sbjct: 644 LQKIAVKILSQTCSSSGCERNWSTWSLIHTKLRNHLAMKKLHKLVYVHYNMRL 696


>tr|A5AXF1|A5AXF1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024052 PE=4 SV=1
          Length = 265

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 38/53 (71%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L  ++ +I ++ CS+  CERNWS +SLIHTK+RNRL  K+L +LVY   N +L
Sbjct: 75  LQNIVVKILSQTCSSSGCERNWSTWSLIHTKLRNRLXMKKLHKLVYVHYNRQL 127


>tr|A5ALP7|A5ALP7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015618 PE=4 SV=1
          Length = 1006

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +2

Query: 29  LWRVIREIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           L ++  +I ++ CS+  CERNWS +SLI TK+RNRL  K+L +LVY   NMRL
Sbjct: 660 LQKIXVKILSQTCSSSGCERNWSTWSLIXTKLRNRLXMKKLHKLVYVHYNMRL 712


>tr|Q2QSP1|Q2QSP1_ORYSJ HAT family dimerisation domain containing
           protein OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g23430 PE=4 SV=1
          Length = 607

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +2

Query: 65  CSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL-VRSFHALGTPKQVDPTEL 241
           CS+  CERNWS ++ +HTK+RNRL+ K+L +LVY   N+RL +R  +A    +  DP  L
Sbjct: 258 CSSSGCERNWSTFAFVHTKVRNRLTHKKLNKLVYVNYNLRLRIRRANAQVRTEDDDP--L 315

Query: 242 KMVTDPTAEEVDARIR 289
           + + D +  E + +I+
Sbjct: 316 QRLADLSFYETNNQIK 331


>tr|A5BW53|A5BW53_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001581 PE=4 SV=1
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 37/47 (78%)
 Frame = +2

Query: 47  EIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           ++ ++  S+ ACERNWS ++LIHTK RNRL+  +LE+LV+C  NMRL
Sbjct: 544 KVLSQTASSSACERNWSTFALIHTKQRNRLAYPRLEQLVFCYYNMRL 590


>tr|A7QFJ7|A7QFJ7_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037447001
           PE=4 SV=1
          Length = 644

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 37/47 (78%)
 Frame = +2

Query: 47  EIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           ++ ++  S+ ACERNWS ++LIHTK RNRL+  +LE+LV+C  NMRL
Sbjct: 278 KVLSQTASSTACERNWSTFALIHTKQRNRLAYSRLEQLVFCYYNMRL 324


>tr|A5BUL1|A5BUL1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015874 PE=4 SV=1
          Length = 1003

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 37/47 (78%)
 Frame = +2

Query: 47  EIQTKDCSAGACERNWSAYSLIHTKIRNRLSTKQLERLVYCRANMRL 187
           ++ ++  S+ ACERNWS ++LIHTK RNRL+  +LE+LV+C  NMRL
Sbjct: 637 KVLSQTASSTACERNWSTFALIHTKQRNRLAYSRLEQLVFCYYNMRL 683