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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945458
Clone id YMU02A01NGRL0009_G04
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_G04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AAAGATAATTTTATGTCAACATGGATGAGAATTCATGAATGCCTTAAAAGGCCTATGGCT
TTACAGAAGATGTGGACTTGGGTAAGAGAATTTGCAATGAGATTTCTAGTCAGAGGCTGA
TGCAGGATATGCCAAACATGATAGTGGAAAGGAAGCTCTGGGTTGTTTTAACCAGATACG
AAGGAAAGGCCTTTCTCCAAATCCAAGAACTATGGCCTTACCTTTCACATGGATGTCAAG
ATTGCTAGTTAGGGCAATGCTTTATCGAAATATGTGCCAAATTTCATGGGGAAAAGGCAA
TATTCTATATTGAGCAGCACTGGTGGCAGGTCTGCCCGTGTGTTTTTAGTTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SY02
Definition sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana
Align length 31
Score (bit) 33.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945458|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_G04, 5'
         (352 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei...    33   0.33 
sp|P94523|ARAA_BACSU L-arabinose isomerase OS=Bacillus subtilis ...    33   0.44 
sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protei...    33   0.57 
sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa s...    32   0.74 
sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protei...    32   0.74 
sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protei...    32   0.97 
sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protei...    32   1.3  
sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containi...    31   2.2  
sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containi...    31   2.2  
sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi...    30   2.8  
sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protei...    30   2.8  
sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protei...    30   3.7  
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei...    30   4.8  
sp|O73884|PHOP1_CHICK Phosphoethanolamine/phosphocholine phospha...    30   4.8  
sp|Q21MP3|ARAA_SACD2 L-arabinose isomerase OS=Saccharophagus deg...    30   4.8  
sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protei...    29   6.3  
sp|Q65GC0|ARAA1_BACLD L-arabinose isomerase 1 OS=Bacillus lichen...    29   6.3  
sp|Q9CDE9|PPIA_MYCLE Probable peptidyl-prolyl cis-trans isomeras...    29   8.2  
sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protei...    29   8.2  
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei...    29   8.2  

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein
           At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1
          Length = 781

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTM 214
           AGY++H  G+ AL  F  ++R+GL P+  TM
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATM 513


>sp|P94523|ARAA_BACSU L-arabinose isomerase OS=Bacillus subtilis
           GN=araA PE=2 SV=2
          Length = 496

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 72  VDLGKR---ICNEISSQRLMQDMPNMIVERKLW 161
           VD+G R   + NE++ Q + +DMPN+ V R LW
Sbjct: 393 VDIGGRFRLVLNEVNGQEIEKDMPNLPVARVLW 425


>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H45 PE=2 SV=1
          Length = 871

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGL 193
           AGY  H  GKEA+  FNQ+R+ G+
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGI 596


>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa
           subsp. indica GN=Rf1 PE=2 SV=1
          Length = 791

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 128 YAKHDSGKEALGCFNQIRRKGLSPNPRT--MALPFTWMSRLLVRAMLY-RNMCQISWGKG 298
           YAK     +A+  F+++R++GL+PN  T    +     S  +  AMLY   M       G
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440

Query: 299 NILY*AALVAGLPVC 343
           NI+Y  +L+ GL  C
Sbjct: 441 NIVY-NSLIHGLCTC 454


>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein
           At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
          Length = 501

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMALPFT 229
           +GY  H    E L CF +++ +G  PNP T  +  T
Sbjct: 283 SGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLT 318


>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H87 PE=2 SV=1
          Length = 633

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMA 217
           +GY++HD   +AL  FNQ+ R G SPN  T++
Sbjct: 134 SGYSQHDRPCDALLFFNQMLRFGYSPNEFTLS 165



 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 128 YAKHDSGKEALGCFNQIRRKGLSPN 202
           YA+H  GKEA+  F ++RR G+ PN
Sbjct: 338 YAQHGFGKEAVWWFEEMRRVGIRPN 362


>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E15 PE=2 SV=1
          Length = 627

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRT 211
           A YA H  GKEA+  +NQ+R+ G  P+  T
Sbjct: 407 AVYAHHGHGKEAIEMYNQMRKHGFKPSAVT 436


>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic OS=Arabidopsis thaliana
           GN=PTAC2 PE=2 SV=1
          Length = 862

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 128 YAKHDSGKEALGCFNQIRRKGLSPNPRTMAL 220
           YAK  S KEA+G F+Q++  G +PN  T ++
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357


>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein
           At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
          Length = 620

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMALPFT 229
           +GYA H  G+EA+  F ++++ G+ PN  T     T
Sbjct: 321 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLT 356


>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein
           At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
          Length = 894

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 125 GYAKHDSGKEALGCFNQIRRKGLSPNPRTMA 217
           GY  H S   AL  FNQ++ +G++PN  T++
Sbjct: 599 GYVLHGSYGPALALFNQMKTQGITPNRGTLS 629
tr_hit_id A7PEB0
Definition tr|A7PEB0|A7PEB0_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945458|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_G04, 5'
         (352 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PEB0|A7PEB0_VITVI Chromosome chr11 scaffold_13, whole genom...    39   0.13 
tr|A7QDH6|A7QDH6_VITVI Chromosome chr10 scaffold_81, whole genom...    36   1.1  
tr|Q769D0|Q769D0_ORYSI PPR protein (Fertility restorer) (Putativ...    35   1.4  
tr|A2YA32|A2YA32_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|B8LLJ0|B8LLJ0_PICSI Putative uncharacterized protein OS=Picea...    35   1.8  
tr|A7PH47|A7PH47_VITVI Chromosome chr17 scaffold_16, whole genom...    35   2.4  
tr|A2XRQ6|A2XRQ6_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q5W964|Q5W964_PHYPA PPR986-12 OS=Physcomitrella patens PE=2 SV=1    34   3.1  
tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|Q84ZM5|Q84ZM5_ORYSJ Os08g0153600 protein OS=Oryza sativa subs...    34   4.1  
tr|A7QPS9|A7QPS9_VITVI Chromosome chr10 scaffold_138, whole geno...    34   4.1  
tr|A5B2K7|A5B2K7_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|A3BWZ6|A3BWZ6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|Q2QNV4|Q2QNV4_ORYSJ Pentatricopeptide, putative, expressed OS...    33   5.4  
tr|Q10MA5|Q10MA5_ORYSJ Pentatricopeptide, putative (Putative unc...    33   5.4  
tr|Q0IMR5|Q0IMR5_ORYSJ Os12g0552300 protein OS=Oryza sativa subs...    33   5.4  
tr|A9T8E9|A9T8E9_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|A7NWP9|A7NWP9_VITVI Chromosome chr5 scaffold_2, whole genome ...    33   5.4  
tr|A3CIA3|A3CIA3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|A2XG11|A2XG11_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q7XUF2|Q7XUF2_ORYSJ Os04g0488200 protein OS=Oryza sativa subs...    33   7.0  
tr|A9T7E2|A9T7E2_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.0  
tr|A3AV29|A3AV29_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A2XUW3|A2XUW3_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|Q6VAK6|Q6VAK6_BACTR Arabinose isomerase OS=Bacillus thermoglu...    33   7.0  
tr|B1G2K0|B1G2K0_9BURK Methyltransferase type 11 OS=Burkholderia...    33   9.1  
tr|Q6YSW0|Q6YSW0_ORYSJ Os07g0299800 protein OS=Oryza sativa subs...    33   9.1  
tr|Q6DXT4|Q6DXT4_GOSHI Putative pentatricopeptide repeat protein...    33   9.1  
tr|Q6DXS0|Q6DXS0_GOSHI Putative pentatricopeptide repeat protein...    33   9.1  
tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subs...    33   9.1  

>tr|A7PEB0|A7PEB0_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016595001
           PE=4 SV=1
          Length = 1005

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMALPFTWMSRL 244
           AGYA+   G++A+ CF Q++R+G+ PN  T+A   +  SR+
Sbjct: 606 AGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRI 646


>tr|A7QDH6|A7QDH6_VITVI Chromosome chr10 scaffold_81, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035842001
           PE=4 SV=1
          Length = 814

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
 Frame = +2

Query: 59  LYRRCG-LG*ENLQ*DF*SEAD--------AGYAKHDSGKEALGCFNQIRRKGLSPN 202
           +Y +CG LG   L  D   E D        AGY  H  G EA+  FN++R  G+ P+
Sbjct: 486 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPD 542


>tr|Q769D0|Q769D0_ORYSI PPR protein (Fertility restorer) (Putative
           uncharacterized protein PPR683) OS=Oryza sativa subsp.
           indica GN=Rf-1B PE=2 SV=1
          Length = 683

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +2

Query: 128 YAKHDSGKEALGCFNQIRRKGLSPNPRT--MALPFTWMSRLLVRAMLY-RNMCQISWGKG 298
           YAK +  +EA+  F+++R++GL+PN  T    +     S  +  AMLY   M       G
Sbjct: 273 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 332

Query: 299 NILY*AALVAGLPVC 343
           NI+Y  +L+ GL  C
Sbjct: 333 NIVY-NSLIHGLCTC 346


>tr|A2YA32|A2YA32_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21945 PE=4 SV=1
          Length = 465

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGL--SPNPRTMALPFTWMSRLLVRA 256
           AGY+++    E+L  FN++R +GL    N     +PF W +  LV A
Sbjct: 401 AGYSENGMANESLVLFNRMRMQGLPKKQNENKAVIPFVWSAEFLVNA 447


>tr|B8LLJ0|B8LLJ0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 644

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMA 217
           A YA+H+ G+EALG F +++  G+ PN  T A
Sbjct: 139 AAYARHEHGQEALGFFYEMQDVGIQPNHFTFA 170


>tr|A7PH47|A7PH47_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017804001
           PE=4 SV=1
          Length = 766

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTM 214
           AGYA+H  GKEAL  F  +++ G+ P+  TM
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTM 498


>tr|A2XRQ6|A2XRQ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15309 PE=4 SV=1
          Length = 613

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPNPRTMALPFT 229
           +GYA+H  GKEA+  F +++ +G+ PN  T  +  T
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLT 350


>tr|Q5W964|Q5W964_PHYPA PPR986-12 OS=Physcomitrella patens PE=2 SV=1
          Length = 986

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPN 202
           AGYA+H  GKEAL  F Q++++G+ P+
Sbjct: 689 AGYAQHGRGKEALELFYQMQQEGVKPD 715


>tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_154890 PE=4 SV=1
          Length = 922

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPN 202
           +GYA H  G+EA+  F Q++R+GL PN
Sbjct: 125 SGYALHGRGQEAVDLFYQMQREGLKPN 151


>tr|Q84ZM5|Q84ZM5_ORYSJ Os08g0153600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1066_B03.110 PE=4 SV=1
          Length = 613

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 122 AGYAKHDSGKEALGCFNQIRRKGLSPN 202
           +GYA+H  GKEA+  F +++ +G+ PN
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPN 341