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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945470
Clone id YMU02A01NGRL0009_G18
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_G18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTAGAACCAGAAAAGAGCGAAAGCCGCCTTCTTCCTGTTATCATGCCTCGTCGAAGCGG
CGGTGGAGGGCGTCCTGCTCCTCGCCCTGTGCGTAGTGCTCCTCCTCCCTCTCGCAAGGC
ACCACCTCCTGCTCCTGCTCAACATGCCCCTCCACCAGCTCCGGCGCCAAGTGGCGGTGG
CTCCCTCCTTGGTGGCCTTGGAGCCACCATCGCTCAAGGAATGGCTTTTGGGACTGGAAG
TGCCATTGCACACAGAGCTGTTGATGGGATAATGGGGCCGCGAACTGTGACGCACGAGCA
TGCAACCCCTGATGCACCCGCTTCTGCAGCTTCCCCAAATCTGACCACAGTTAGTGGGTC
AGACGCGTGCACAAATCAGACTAAGTCCTTCCAAGATTGCATCAATGCTTATGGCAGTGA
CATTGGAAAGTGCCAATTCTACGTGGATATGCTAAATGAGTGCCGCCGCGGACCATCATC
ATCAATGACTCTGTAATGCATGGAGGAGGGCAATGGAATAAAAGTTAGTTGGAAGTAGTG
AATGGAAAATATGGTTGGTCCTGTGGTGTGACT
■■Homology search results ■■ -
sp_hit_id Q14674
Definition sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens
Align length 96
Score (bit) 33.5
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945470|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_G18, 5'
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=2       33   0.77 
sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c OS=Schizos...    33   1.3  
sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    32   2.9  
sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18 O...    31   3.8  
sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicas...    30   8.5  
sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1       30   8.5  

>sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=2
          Length = 2120

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -3

Query: 403  DAILEGLSLICARV*PTNCGQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVCNGTSSPKS 224
            ++  E L+LI + V  T C     + + G +   +L+    +   P++  +  G +    
Sbjct: 1693 ESFQERLALIPSGV--TVCVLALATLQPGTVGNTLLLTRLEKDSPPVSVQIPTGQNKLHL 1750

Query: 223  HSLS---DGGSKATKEGATATWRRSWWRGMLSRSRR 125
             S+    D   KA KE ++ T +R WW G L+   R
Sbjct: 1751 RSVLNEFDAIQKAQKENSSCTDKREWWTGRLALDHR 1786


>sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c
           OS=Schizosaccharomyces pombe GN=SPAC6C3.02c PE=2 SV=1
          Length = 172

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 362 DACTNQTKSFQDCINAYGSDIGKCQFYVDMLNECR 466
           +AC    K F DCIN +  +  +C +Y++ L  C+
Sbjct: 133 NACKGDAKMFADCINEH--EFSQCSYYLEQLKACQ 165


>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 355 TNC--GQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVC-NGTSSPKSHSLSDGG 203
           T C  GQ++  C S C R C  +R       P   ++C +G + P+   L DGG
Sbjct: 807 TQCRGGQVYQECSSPCGRTCADLRLDGASSCPSLDNICVSGCNCPEGPVLDDGG 860


>sp|A2AJT4|SFR18_MOUSE Splicing factor, arginine/serine-rich 18
           OS=Mus musculus GN=Sfrs18 PE=2 SV=1
          Length = 805

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -3

Query: 328 CRSGCIRGCMLVRHSSRPHYPINSSVCNGTSSPKSHSLSDGGSKATKEGATATWRRSWWR 149
           CRSG I    ++RH SR       S  N T   K HS SD   +++ E   ++  +   +
Sbjct: 722 CRSGSI-SVKVIRHDSR-----QDSKKNATKDSKRHSGSDSSGRSSSESPGSSKEKKAKK 775

Query: 148 GMLSRSR 128
              SRSR
Sbjct: 776 PKHSRSR 782


>sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicase
           40 OS=Arabidopsis thaliana GN=RH40 PE=3 SV=1
          Length = 1088

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 311 QGLHARASQFAAPLSHQQLCVQWHFQSQKPFLERWWLQGH----QGGSHRHLAP 162
           QG+  + SQ    LSHQ    Q H+   +P ++   LQ      QGG H    P
Sbjct: 159 QGMQNQHSQMPQQLSHQYAHSQQHYMGFRPHMQTQGLQNSHQTPQGGPHGQQFP 212


>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1
          Length = 2118

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -3

Query: 403  DAILEGLSLICARV*PTNCGQIWGSCRSGCIRGCMLVRHSSRPHYPINSSVCNGTSS-PK 227
            ++  E L+LI + V  T C     + + G +   +L+    + + PI   +    +  P 
Sbjct: 1689 ESFQERLALIPSGV--TVCVLALATLQPGTLSNTLLLTRLEKDNPPITVKIPTAQNKLPL 1746

Query: 226  SHSLS--DGGSKATKEGATATWRRSWWRGMLSRSRR 125
            S  L   D   K  KE ++ T +R WW G L+  +R
Sbjct: 1747 SAVLKEFDAIQKDQKENSSCTEKRVWWTGRLALDQR 1782
tr_hit_id A9TBQ5
Definition tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 128.0
E-value 3.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945470|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_G18, 5'
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella paten...   128   3e-28
tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea...   128   3e-28
tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella paten...   125   1e-27
tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein OSJNBb00...   118   2e-25
tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subs...   118   2e-25
tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza...   118   2e-25
tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, who...   117   3e-25
tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea...   117   6e-25
tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea...   117   6e-25
tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Popul...   114   3e-24
tr|B6TU93|B6TU93_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1                  113   7e-24
tr|B6TKB9|B6TKB9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  113   7e-24
tr|B6SYU7|B6SYU7_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  113   7e-24
tr|A7NUJ9|A7NUJ9_VITVI Chromosome chr18 scaffold_1, whole genome...   112   1e-23
tr|A5BAI7|A5BAI7_VITVI Putative uncharacterized protein OS=Vitis...   112   1e-23
tr|A9PAP4|A9PAP4_POPTR Putative uncharacterized protein OS=Popul...   112   1e-23
tr|B6TMH9|B6TMH9_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  111   2e-23
tr|B4FQ38|B4FQ38_MAIZE Putative uncharacterized protein OS=Zea m...   111   2e-23
tr|B4FPU2|B4FPU2_MAIZE Putative uncharacterized protein OS=Zea m...   111   2e-23
tr|B6T269|B6T269_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                  109   9e-23
tr|A5C8U7|A5C8U7_VITVI Putative uncharacterized protein (Fragmen...   108   2e-22
tr|A9RXK6|A9RXK6_PHYPA Predicted protein OS=Physcomitrella paten...   107   6e-22
tr|Q9FME9|Q9FME9_ARATH Emb|CAB89373.1 OS=Arabidopsis thaliana GN...   103   9e-21
tr|Q5YJM4|Q5YJM4_HYAOR Putative uncharacterized protein OS=Hyaci...    97   5e-19
tr|B6SJ12|B6SJ12_MAIZE p8MTCP1 OS=Zea mays PE=2 SV=1                   95   2e-18
tr|B6T1P5|B6T1P5_MAIZE p8MTCP1 OS=Zea mays PE=4 SV=1                   77   4e-17
tr|Q9LXC2|Q9LXC2_ARATH Putative uncharacterized protein F17I14_2...    91   6e-17
tr|A8J0Y5|A8J0Y5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    86   1e-15
tr|Q2QLL3|Q2QLL3_ORYSJ Os12g0637900 protein OS=Oryza sativa subs...    65   2e-09
tr|A2ZN58|A2ZN58_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09

>tr|A9TBQ5|A9TBQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169185 PE=4 SV=1
          Length = 142

 Score =  128 bits (321), Expect = 3e-28
 Identities = 60/94 (63%), Positives = 71/94 (75%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQG+AFGTGSA+AHRAVD +MGPRTV HEH                VS +DAC NQ+K
Sbjct: 49  TIAQGLAFGTGSAVAHRAVDSVMGPRTVVHEHVGGQPDSGGQAPLAQPVS-ADACANQSK 107

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSSM 487
           +FQDC+NA  SDIG+CQFY+DMLNECRRGP+ +M
Sbjct: 108 AFQDCVNANNSDIGRCQFYIDMLNECRRGPTQTM 141


>tr|A9NKP0|A9NKP0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score =  128 bits (321), Expect = 3e-28
 Identities = 60/92 (65%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXX-NLTTVSGSDACTNQT 382
           TIAQG+AFGTGSAIAHRAVD ++GPRTV HE+A  +         ++  + G D+CTNQ 
Sbjct: 51  TIAQGVAFGTGSAIAHRAVDAVVGPRTVQHEYAPAETPAAQTGSLSVANMGGMDSCTNQA 110

Query: 383 KSFQDCINAYGSDIGKCQFYVDMLNECRRGPS 478
           K+FQDCI+ YGSDI KCQFYVDMLNECRRGP+
Sbjct: 111 KAFQDCISNYGSDISKCQFYVDMLNECRRGPA 142


>tr|A9U335|A9U335_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155222 PE=4 SV=1
          Length = 139

 Score =  125 bits (315), Expect = 1e-27
 Identities = 60/94 (63%), Positives = 70/94 (74%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQG+AFGTGSA+A+RAVD IMGPRTV HEH             L     +DAC NQ+K
Sbjct: 48  TIAQGLAFGTGSAVANRAVDSIMGPRTVVHEHIGASESGGQP---LAQPVSADACVNQSK 104

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSSM 487
           +FQDC+NA  SDIGKCQFY+DMLNECRRGP+ +M
Sbjct: 105 AFQDCVNANNSDIGKCQFYIDMLNECRRGPAQTM 138


>tr|Q9AUL2|Q9AUL2_ORYSA Putative uncharacterized protein
           OSJNBb0072E24.9 OS=Oryza sativa GN=OSJNBb0072E24.9 PE=4
           SV=1
          Length = 138

 Score =  118 bits (296), Expect = 2e-25
 Identities = 56/93 (60%), Positives = 69/93 (74%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 48  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 105

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSS 484
           +FQDCIN YGSDI KCQFY+DMLNECRRG +S+
Sbjct: 106 AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 138


>tr|Q7XXS3|Q7XXS3_ORYSJ Os03g0685500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0685500 PE=2 SV=1
          Length = 138

 Score =  118 bits (296), Expect = 2e-25
 Identities = 56/93 (60%), Positives = 69/93 (74%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 48  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 105

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSS 484
           +FQDCIN YGSDI KCQFY+DMLNECRRG +S+
Sbjct: 106 AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 138


>tr|B8APK7|B8APK7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13062 PE=4 SV=1
          Length = 126

 Score =  118 bits (296), Expect = 2e-25
 Identities = 56/93 (60%), Positives = 69/93 (74%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +   + SD+C+  +K
Sbjct: 36  TIAQGMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASATP--MANATPSDSCSIHSK 93

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSS 484
           +FQDCIN YGSDI KCQFY+DMLNECRRG +S+
Sbjct: 94  AFQDCINNYGSDISKCQFYLDMLNECRRGGASA 126


>tr|A7QM14|A7QM14_VITVI Chromosome undetermined scaffold_123, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001871001 PE=4 SV=1
          Length = 145

 Score =  117 bits (294), Expect = 3e-25
 Identities = 55/94 (58%), Positives = 67/94 (71%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +         +  V GSDAC   +K
Sbjct: 51  TIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVASEAAASSAP-TMNNVGGSDACNAHSK 109

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSSM 487
           +FQDC+N+ GSDI KCQFY+DML+ECRR   S +
Sbjct: 110 AFQDCLNSSGSDISKCQFYMDMLSECRRNSGSML 143


>tr|A9NS75|A9NS75_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score =  117 bits (292), Expect = 6e-25
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHE--HATPDXXXXXXXXNLTTVSGSDACTNQ 379
           TIA+G+AFGTGSAIAHRAVD  +GPRTV HE   A            ++ +SG D+C N 
Sbjct: 47  TIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGNH 106

Query: 380 TKSFQDCINAYGSDIGKCQFYVDMLNECRRGPSS 481
           +K+FQ+C+  YGSDIGKCQFY+DMLNECRRG ++
Sbjct: 107 SKAFQECLTNYGSDIGKCQFYLDMLNECRRGSTT 140


>tr|A9NPP6|A9NPP6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score =  117 bits (292), Expect = 6e-25
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHE--HATPDXXXXXXXXNLTTVSGSDACTNQ 379
           TIA+G+AFGTGSAIAHRAVD  +GPRTV HE   A            ++ +SG D+C N 
Sbjct: 47  TIAEGVAFGTGSAIAHRAVDAFLGPRTVQHEVVQAEAPAAAQTSMPAMSNLSGKDSCGNH 106

Query: 380 TKSFQDCINAYGSDIGKCQFYVDMLNECRRGPSS 481
           +K+FQ+C+  YGSDIGKCQFY+DMLNECRRG ++
Sbjct: 107 SKAFQECLTNYGSDIGKCQFYLDMLNECRRGSAT 140


>tr|A9PDV5|A9PDV5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 146

 Score =  114 bits (286), Expect = 3e-24
 Identities = 52/94 (55%), Positives = 67/94 (71%)
 Frame = +2

Query: 206 TIAQGMAFGTGSAIAHRAVDGIMGPRTVTHEHATPDXXXXXXXXNLTTVSGSDACTNQTK 385
           TIAQGMAFGTGSA+AHRAVD +MGPRT+ HE    +          +++ G+DAC   TK
Sbjct: 52  TIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVSEAAAAAAP-TASSMGGADACNIHTK 110

Query: 386 SFQDCINAYGSDIGKCQFYVDMLNECRRGPSSSM 487
           +FQDC+N +G+DI KCQFY+DML ECR+   S +
Sbjct: 111 AFQDCVNNFGNDISKCQFYMDMLTECRKNSGSML 144