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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945487
Clone id YMU02A01NGRL0009_H16
Library
Length 374
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_H16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGAAAATGGGTGATTCACATTGAGAGGATCACAAGAGAGAAAGTGAATGGTGCTACTGT
GAATGTAGGGATTGACCCCTCTAAGGTGGTGATCACGAAGCTCAAGCTTGACAAGGATAG
GAAGGCGCTGCTTGATAGGAAAGGAAAGGGTAGAGCTGCAGAGAAGGGCAAAGGGAAATT
CACAAGCGAGGAGGTGGCTGCTCCTCTGCAGGAAGTAGATTAATCTTGTAGCGGACTCCT
TTTGCCATGTACATGTCTGGCAGAATTTTGCGATGGTGAGAAACTTCCTAATTTAACTGA
TTTACCCAGTTACATTGAGAAAATTCTGAATACAGATTATGATTAANAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P51414
Definition sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana
Align length 32
Score (bit) 63.5
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945487|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_H16, 5'
         (344 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis...    64   3e-10
sp|Q9FJX2|RL262_ARATH 60S ribosomal protein L26-2 OS=Arabidopsis...    58   2e-08
sp|Q39411|RL26_BRARA 60S ribosomal protein L26 OS=Brassica rapa ...    57   4e-08
sp|Q19869|RL26_CAEEL 60S ribosomal protein L26 OS=Caenorhabditis...    51   2e-06
sp|P61255|RL26_MOUSE 60S ribosomal protein L26 OS=Mus musculus G...    50   3e-06
sp|P61256|RL26_MACFA 60S ribosomal protein L26 OS=Macaca fascicu...    50   3e-06
sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens G...    50   3e-06
sp|P47832|RL26_CHICK 60S ribosomal protein L26 (Fragment) OS=Gal...    50   3e-06
sp|P61257|RL26_BOVIN 60S ribosomal protein L26 OS=Bos taurus GN=...    50   3e-06
sp|Q2I0I6|RL26_AILME 60S ribosomal protein L26 OS=Ailuropoda mel...    50   3e-06
sp|Q9UNX3|RL26L_HUMAN 60S ribosomal protein L26-like 1 OS=Homo s...    50   3e-06
sp|P12749|RL26_RAT 60S ribosomal protein L26 OS=Rattus norvegicu...    50   5e-06
sp|Q95WA0|RL26_LITLI 60S ribosomal protein L26 OS=Littorina litt...    49   6e-06
sp|P78946|RL26_SCHPO 60S ribosomal protein L26 OS=Schizosaccharo...    45   1e-04
sp|Q54QM8|RL26_DICDI 60S ribosomal protein L26 OS=Dictyostelium ...    40   0.003
sp|P53221|RL26B_YEAST 60S ribosomal protein L26-B OS=Saccharomyc...    40   0.003
sp|P05743|RL26A_YEAST 60S ribosomal protein L26-A OS=Saccharomyc...    40   0.003
sp|Q5GH66|XKR5_MOUSE XK-related protein 5 OS=Mus musculus GN=Xkr...    31   2.2  
sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseu...    31   2.2  
sp|A1RWS4|RL24_THEPD 50S ribosomal protein L24P OS=Thermofilum p...    30   2.9  
sp|B1L777|RL24_KORCO 50S ribosomal protein L24P OS=Korarchaeum c...    30   2.9  
sp|Q9UX95|RL24_SULSO 50S ribosomal protein L24P OS=Sulfolobus so...    30   3.7  
sp|Q9HB75|PIDD_HUMAN Leucine-rich repeat and death domain-contai...    30   3.7  
sp|O74364|YND3_SCHPO Uncharacterized protein C30B4.03c OS=Schizo...    30   4.9  
sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila mela...    30   4.9  

>sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis
           thaliana GN=RPL26A PE=2 SV=2
          Length = 146

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/32 (93%), Positives = 30/32 (93%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           RKWVIHIERITREKVNG TVNVGI PSKVVIT
Sbjct: 75  RKWVIHIERITREKVNGTTVNVGIQPSKVVIT 106


>sp|Q9FJX2|RL262_ARATH 60S ribosomal protein L26-2 OS=Arabidopsis
           thaliana GN=RPL26B PE=2 SV=1
          Length = 146

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           RKWVIHIERITREKVNG+TVNVG++ S V+IT
Sbjct: 75  RKWVIHIERITREKVNGSTVNVGVNASNVMIT 106


>sp|Q39411|RL26_BRARA 60S ribosomal protein L26 OS=Brassica rapa
           GN=RPL26 PE=2 SV=1
          Length = 146

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           RK VIHIER+TREKVNG TVNVG+ P+KVVIT
Sbjct: 75  RKXVIHIERLTREKVNGTTVNVGVQPTKVVIT 106


>sp|Q19869|RL26_CAEEL 60S ribosomal protein L26 OS=Caenorhabditis
           elegans GN=rpl-26 PE=2 SV=1
          Length = 142

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VIHI++ITREK NG+TV++GI PSKV IT
Sbjct: 75  KKFVIHIDKITREKANGSTVHIGIHPSKVAIT 106


>sp|P61255|RL26_MOUSE 60S ribosomal protein L26 OS=Mus musculus
           GN=Rpl26 PE=2 SV=1
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 76  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107


>sp|P61256|RL26_MACFA 60S ribosomal protein L26 OS=Macaca
           fascicularis GN=RPL26 PE=2 SV=1
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 76  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107


>sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens
           GN=RPL26 PE=1 SV=1
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 76  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107


>sp|P47832|RL26_CHICK 60S ribosomal protein L26 (Fragment) OS=Gallus
           gallus GN=RPL26 PE=2 SV=1
          Length = 128

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 59  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90


>sp|P61257|RL26_BOVIN 60S ribosomal protein L26 OS=Bos taurus
           GN=RPL26 PE=2 SV=1
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 76  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107


>sp|Q2I0I6|RL26_AILME 60S ribosomal protein L26 OS=Ailuropoda
           melanoleuca GN=RPL26 PE=2 SV=1
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVIT 97
           +K+VI+IER+ REK NG TV+VGI PSKVVIT
Sbjct: 76  KKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
tr_hit_id A9SE51
Definition tr|A9SE51|A9SE51_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 72.8
E-value 8.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945487|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_H16, 5'
         (344 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SE51|A9SE51_PHYPA Predicted protein (Fragment) OS=Physcomit...    73   8e-12
tr|A9SUH7|A9SUH7_PHYPA Predicted protein (Fragment) OS=Physcomit...    72   2e-11
tr|A9NXB2|A9NXB2_PICSI Putative uncharacterized protein OS=Picea...    70   5e-11
tr|A9RV92|A9RV92_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   7e-11
tr|A9RJP0|A9RJP0_PHYPA Predicted protein OS=Physcomitrella paten...    69   9e-11
tr|A9NUP7|A9NUP7_PICSI Putative uncharacterized protein OS=Picea...    69   9e-11
tr|A5AD03|A5AD03_VITVI Putative uncharacterized protein (Chromos...    67   6e-10
tr|Q2QXN5|Q2QXN5_ORYSJ Os12g0150100 protein OS=Oryza sativa subs...    66   8e-10
tr|A2ZI36|A2ZI36_ORYSI Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|Q53Q51|Q53Q51_ORYSJ Ribosomal protein L24, putative (Putative...    65   2e-09
tr|Q53PZ2|Q53PZ2_ORYSJ 60S ribosomal protein L26-1, putative, ex...    65   2e-09
tr|Q0IUK5|Q0IUK5_ORYSJ Os11g0151300 protein (Fragment) OS=Oryza ...    65   2e-09
tr|A2ZBI3|A2ZBI3_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A9PB00|A9PB00_POPTR Putative uncharacterized protein OS=Popul...    64   3e-09
tr|A9PBY3|A9PBY3_POPTR Putative uncharacterized protein OS=Popul...    64   4e-09
tr|A5AQ64|A5AQ64_VITVI Putative uncharacterized protein (Chromos...    64   4e-09
tr|B4UWB3|B4UWB3_ARAHY Putative L24 ribosomal protein OS=Arachis...    64   5e-09
tr|Q9AWS9|Q9AWS9_ORYSJ Putative ribosomal protein L26 OS=Oryza s...    62   1e-08
tr|Q4U3E9|Q4U3E9_IPOBA Putative L24 ribosomal protein OS=Ipomoea...    62   1e-08
tr|A2WKH0|A2WKH0_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A9S9V3|A9S9V3_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|O82579|O82579_MAIZE Ribosomal protein L26 (Fragment) OS=Zea m...    61   2e-08
tr|B6TPG2|B6TPG2_MAIZE 60S ribosomal protein L26-1 OS=Zea mays P...    61   2e-08
tr|A9PDH4|A9PDH4_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A9P8G8|A9P8G8_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A4S5G6|A4S5G6_OSTLU Ribosomal protein L26, component of cytos...    60   7e-08
tr|A8HMG7|A8HMG7_CHLRE Ribosomal protein L26 OS=Chlamydomonas re...    58   3e-07
tr|B6KH63|B6KH63_TOXGO 60S ribosomal protein L26, putative OS=To...    56   1e-06
tr|A9T3L6|A9T3L6_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   1e-06
tr|Q2F6G3|Q2F6G3_ANTEL 60S ribosomal protein L26-like protein (F...    55   2e-06

>tr|A9SE51|A9SE51_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128273 PE=4 SV=1
          Length = 141

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 40/73 (54%), Positives = 42/73 (57%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           RKWVIH+ERITREKVNGATVNVGID SKVVIT                           F
Sbjct: 69  RKWVIHVERITREKVNGATVNVGIDASKVVITKLKLDKDRKALLERKGKGRAGDKGKGKF 128

Query: 182 TSEEVAAPLQEVD 220
           T  +VA PLQEVD
Sbjct: 129 TDADVAPPLQEVD 141


>tr|A9SUH7|A9SUH7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_135504 PE=4 SV=1
          Length = 141

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 39/73 (53%), Positives = 42/73 (57%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           RKWVIH+ERITREKVNGATVNVGID SKVVIT                           F
Sbjct: 69  RKWVIHVERITREKVNGATVNVGIDTSKVVITKLKLDKDRKALLERKGKGRAAEKGKGKF 128

Query: 182 TSEEVAAPLQEVD 220
           T  +V+ PLQEVD
Sbjct: 129 TDADVSPPLQEVD 141


>tr|A9NXB2|A9NXB2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/73 (46%), Positives = 44/73 (60%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           +KWVIH+ERITR+KVNG+TVNVG+ PSKV++T                           F
Sbjct: 75  KKWVIHVERITRDKVNGSTVNVGVHPSKVIVTKLKLDKDRKSLLERKGKGRAAEKGKGKF 134

Query: 182 TSEEVAAPLQEVD 220
           T+E+VA PLQ+VD
Sbjct: 135 TAEDVAQPLQDVD 147


>tr|A9RV92|A9RV92_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_119898 PE=4 SV=1
          Length = 141

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 39/73 (53%), Positives = 42/73 (57%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           RKWVIHIERITREKVNGATV+VGID SKVVIT                           F
Sbjct: 69  RKWVIHIERITREKVNGATVDVGIDTSKVVITKLKLDKDRKALLERKGKGRDADKGKGKF 128

Query: 182 TSEEVAAPLQEVD 220
           +  +VA PLQEVD
Sbjct: 129 SDADVAPPLQEVD 141


>tr|A9RJP0|A9RJP0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_67027 PE=4 SV=1
          Length = 145

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 40/73 (54%), Positives = 43/73 (58%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           RKWVIH+ERITREKVNGATVNVGID S VVIT                           F
Sbjct: 75  RKWVIHVERITREKVNGATVNVGIDTSNVVIT--KLKLDKDRKALLERKGKGRSAEKGKF 132

Query: 182 TSEEVAAPLQEVD 220
           T+E+VA PLQEVD
Sbjct: 133 TNEDVAPPLQEVD 145


>tr|A9NUP7|A9NUP7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 34/73 (46%), Positives = 43/73 (58%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           +KWVIH+ERITREKVNG TVNVG+ PSKV++T                           F
Sbjct: 75  KKWVIHVERITREKVNGQTVNVGVHPSKVIVTKLKIDKDRKDLLERKGKGRAAEKGKGKF 134

Query: 182 TSEEVAAPLQEVD 220
           T+++VA PLQ+VD
Sbjct: 135 TADDVAQPLQDVD 147


>tr|A5AD03|A5AD03_VITVI Putative uncharacterized protein (Chromosome
           chr14 scaffold_9, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00038278001 PE=4 SV=1
          Length = 151

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 39/77 (50%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           RKWVIHIERITREKVNG+TVNVGI+PSKVVI                            F
Sbjct: 75  RKWVIHIERITREKVNGSTVNVGINPSKVVINKLKLDKDRKSLLDRKAKGRAADKAKGKF 134

Query: 182 TSEEVAA----PLQEVD 220
           T+E+VAA     LQE+D
Sbjct: 135 TAEDVAAAAAPSLQEID 151


>tr|Q2QXN5|Q2QXN5_ORYSJ Os12g0150100 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0150100 PE=2 SV=1
          Length = 150

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           R+WVIH+ERITREKVNG+TVNVGI PSKVV+T                           F
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGRAADKAKGKF 134

Query: 182 TSEEVA---APLQEVD 220
           T+E+VA   A LQE+D
Sbjct: 135 TAEDVAAAGASLQEID 150


>tr|A2ZI36|A2ZI36_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37478 PE=4 SV=1
          Length = 150

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           R+WVIH+ERITREKVNG+TVNVGI PSKVV+T                           F
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGRAADKAKGKF 134

Query: 182 TSEEVA---APLQEVD 220
           T+E+VA   A LQE+D
Sbjct: 135 TAEDVAAAGASLQEID 150


>tr|Q53Q51|Q53Q51_ORYSJ Ribosomal protein L24, putative (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g05370 PE=4 SV=1
          Length = 153

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
 Frame = +2

Query: 2   RKWVIHIERITREKVNGATVNVGIDPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXF 181
           R+WVIH+ERITREKVNG+TVNVGI PSKVV+T                           F
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGRAADKAKGKF 134

Query: 182 TSEEVA------APLQEVD 220
           T+E+VA      A LQE+D
Sbjct: 135 TAEDVAAAGAAGASLQEID 153