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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945488
Clone id YMU02A01NGRL0009_H18
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_H18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGATCCAATGCGAGGTGGAAG
GGATGCACTCTTTGAAGACATCCTTGCAGTTGTACGTGCAGGTGATAAGGAGGCACAATT
GAAAGATGCTACTTCGGAGCCAAGACGAAGATTGGTTCCGGAGCTGCTACTTCAGTTAGC
TCGGTCTGTCAGCCCTTTCTAAAGGCTCCCCAGCTTCTTTTGTTGCTAAAGTCCAAGCGG
CTACTTTGTGCCAAGAGCTTTTCTGCAATGAAATGCTGATTTCACCATGGCTATACCTCC
TGGTTATATTCATTGAAATTTAAGAAATCATTGCTATGTATTCNAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q92NM8
Definition sp|Q92NM8|DNLJ_RHIME DNA ligase OS=Rhizobium meliloti
Align length 33
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945488|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_H18, 5'
         (304 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92NM8|DNLJ_RHIME DNA ligase OS=Rhizobium meliloti GN=ligA PE...    29   8.4  

>sp|Q92NM8|DNLJ_RHIME DNA ligase OS=Rhizobium meliloti GN=ligA PE=3
           SV=1
          Length = 717

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSE 99
           +P+R GRD    D++ V RAGD   Q+ D   +
Sbjct: 384 EPIRDGRDVRIGDMVIVQRAGDVIPQIVDVVMD 416
tr_hit_id A7P2Z7
Definition tr|A7P2Z7|A7P2Z7_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera
Align length 53
Score (bit) 50.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945488|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_H18, 5'
         (304 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P2Z7|A7P2Z7_VITVI Chromosome chr1 scaffold_5, whole genome ...    50   4e-05
tr|A5BXD7|A5BXD7_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|Q9LFU2|Q9LFU2_ARATH Carboxylesterase-like protein OS=Arabidop...    44   0.005
tr|Q94AS5|Q94AS5_ARATH Putative Carboxylesterase OS=Arabidopsis ...    44   0.005
tr|Q6L5F5|Q6L5F5_ORYSJ Os05g0577200 protein OS=Oryza sativa subs...    42   0.016
tr|A3B745|A3B745_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.016
tr|A2Y7U0|A2Y7U0_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.016
tr|Q9M899|Q9M899_ARATH F16B3.4 protein OS=Arabidopsis thaliana G...    41   0.035
tr|Q1PET6|Q1PET6_ARATH Putative uncharacterized protein OS=Arabi...    41   0.035
tr|B3H6W3|B3H6W3_ARATH Uncharacterized protein At3g02410.2 OS=Ar...    41   0.035
tr|A7Q8B1|A7Q8B1_VITVI Chromosome chr14 scaffold_63, whole genom...    41   0.035
tr|A0MEU1|A0MEU1_ARATH Putative uncharacterized protein (Fragmen...    41   0.035
tr|Q1KUX4|Q1KUX4_9ROSI Putative uncharacterized protein OS=Cleom...    40   0.077
tr|B4FFC7|B4FFC7_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.22 
tr|A9SFX0|A9SFX0_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.50 
tr|Q9C556|Q9C556_ARATH Putative uncharacterized protein F28B23.2...    36   0.85 
tr|Q8VYP9|Q8VYP9_ARATH Putative uncharacterized protein At1g2612...    36   0.85 
tr|B8ACD1|B8ACD1_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A2ZVX0|A2ZVX0_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B1MFF0|B1MFF0_MYCA9 Hypothetical GMC-type oxidoreductase OS=M...    34   4.2  
tr|A9TAW2|A9TAW2_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  

>tr|A7P2Z7|A7P2Z7_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030247001
           PE=3 SV=1
          Length = 458

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DPMRGGRD +FED++A++ A D EA  KDA + P              +VSPF
Sbjct: 406 DPMRGGRDDMFEDLVAMIHANDPEALAKDAVAPPRKRLVPEFMLKLARAVSPF 458


>tr|A5BXD7|A5BXD7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017373 PE=3 SV=1
          Length = 395

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DPMRGGRD +FED++A++ A D EA  KDA + P              +VSPF
Sbjct: 343 DPMRGGRDDMFEDLVAMIHANDPEALAKDAVAPPRKRLVPEFMLKLARAVSPF 395


>tr|Q9LFU2|Q9LFU2_ARATH Carboxylesterase-like protein OS=Arabidopsis
           thaliana GN=F14F8_240 PE=3 SV=1
          Length = 419

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGG+D LF+DI++V+ A D +   KD+ + P               +SPF
Sbjct: 367 DPLRGGKDELFDDIVSVIHAEDNDGLTKDSLAPPRKRLVPELLLKLAREISPF 419


>tr|Q94AS5|Q94AS5_ARATH Putative Carboxylesterase OS=Arabidopsis
           thaliana GN=At5g15860 PE=2 SV=1
          Length = 427

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGG+D LF+DI++V+ A D +   KD+ + P               +SPF
Sbjct: 375 DPLRGGKDELFDDIVSVIHAEDNDGLTKDSLAPPRKRLVPELLLKLAREISPF 427


>tr|Q6L5F5|Q6L5F5_ORYSJ Os05g0577200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1126_B10.7 PE=3 SV=1
          Length = 414

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGGRD L ED+++V+ A D +A+ KDA +                 +SPF
Sbjct: 362 DPLRGGRDKLVEDVISVIHADDADAREKDALAPIPGRLVSEWQIKLAHRISPF 414


>tr|A3B745|A3B745_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018867 PE=3 SV=1
          Length = 371

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGGRD L ED+++V+ A D +A+ KDA +                 +SPF
Sbjct: 319 DPLRGGRDKLVEDVISVIHADDADAREKDALAPIPGRLVSEWQIKLAHRISPF 371


>tr|A2Y7U0|A2Y7U0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21109 PE=3 SV=1
          Length = 458

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGGRD L ED+++V+ A D +A+ KDA +                 +SPF
Sbjct: 406 DPLRGGRDKLVEDVISVIHADDADAREKDALAPIPGRLVSEWQIKLAHRISPF 458


>tr|Q9M899|Q9M899_ARATH F16B3.4 protein OS=Arabidopsis thaliana
           GN=F16B3.4 PE=3 SV=1
          Length = 373

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGG+D LF+ I++++ A D +A   DA + P               VSPF
Sbjct: 321 DPLRGGKDELFDHIVSMIHADDSDALRNDAVAPPRKRLVPEFLLKLAGRVSPF 373


>tr|Q1PET6|Q1PET6_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At3g02410 PE=2 SV=1
          Length = 422

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGG+D LF+ I++++ A D +A   DA + P               VSPF
Sbjct: 370 DPLRGGKDELFDHIVSMIHADDSDALRNDAVAPPRKRLVPEFLLKLAGRVSPF 422


>tr|B3H6W3|B3H6W3_ARATH Uncharacterized protein At3g02410.2
           OS=Arabidopsis thaliana GN=At3g02410 PE=4 SV=1
          Length = 353

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   DPMRGGRDALFEDILAVVRAGDKEAQLKDATSEPXXXXXXXXXXXXXXSVSPF 159
           DP+RGG+D LF+ I++++ A D +A   DA + P               VSPF
Sbjct: 301 DPLRGGKDELFDHIVSMIHADDSDALRNDAVAPPRKRLVPEFLLKLAGRVSPF 353