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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945498
Clone id YMU02A01NGRL0009_I09
Library
Length 162
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_I09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTTGCAACGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCCGC
GATTCATCGAGTCTTTGAACGCAACTTGCGCCCGCGGCTCGTCCAAGGGCATGTCTGCCT
GAGCGTCCACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8TGM5
Definition sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyces cerevisiae
Align length 34
Score (bit) 52.4
E-value 7.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945498|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_I09, 5'
         (133 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyc...    52   7e-07
sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN ...    29   6.3  

>sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyces
           cerevisiae GN=ART3 PE=2 SV=1
          Length = 67

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 25/34 (73%), Positives = 28/34 (82%)
 Frame = -3

Query: 104 GRAAGASCVQRLDESRNSAIHTTYRISLRSSSLQ 3
           G   GA CVQR D+SRNSAIH TYRISLRSSS++
Sbjct: 4   GIPRGAMCVQRFDDSRNSAIHITYRISLRSSSMR 37


>sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN
           PE=2 SV=1
          Length = 3209

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 82  AFKDSMNRGILQFTLRIAFRCVLHRCK 2
           AF DS     LQFTLR+  + VL  CK
Sbjct: 508 AFLDSSQSRFLQFTLRLGSKSVLSTCK 534
tr_hit_id A9U5J8
Definition tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 73.2
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945498|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_I09, 5'
         (133 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella paten...    73   6e-12
tr|A9U7C6|A9U7C6_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-09
tr|A9U5X4|A9U5X4_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-09
tr|A9U5I5|A9U5I5_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-09
tr|A9U6L7|A9U6L7_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   1e-08
tr|Q0WWS3|Q0WWS3_ARATH Putative uncharacterized protein (Fragmen...    57   5e-07
tr|B8CEF4|B8CEF4_THAPS Predicted protein OS=Thalassiosira pseudo...    49   1e-04
tr|A7TBY8|A7TBY8_NEMVE Predicted protein (Fragment) OS=Nematoste...    48   3e-04
tr|A7T6D5|A7T6D5_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7T247|A7T247_NEMVE Predicted protein (Fragment) OS=Nematoste...    48   3e-04
tr|A7T1X6|A7T1X6_NEMVE Predicted protein (Fragment) OS=Nematoste...    48   3e-04
tr|A7T0Y8|A7T0Y8_NEMVE Predicted protein (Fragment) OS=Nematoste...    48   3e-04
tr|A7SWL8|A7SWL8_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SUZ1|A7SUZ1_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SUY5|A7SUY5_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SPZ6|A7SPZ6_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SPZ2|A7SPZ2_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SPY5|A7SPY5_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A7SI01|A7SI01_NEMVE Predicted protein OS=Nematostella vectens...    48   3e-04
tr|A9U701|A9U701_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   6e-04
tr|A7T0Z3|A7T0Z3_NEMVE Predicted protein (Fragment) OS=Nematoste...    47   6e-04
tr|A7SUZ5|A7SUZ5_NEMVE Predicted protein (Fragment) OS=Nematoste...    46   8e-04
tr|A7TBQ8|A7TBQ8_NEMVE Predicted protein OS=Nematostella vectens...    45   0.002
tr|A7SUL5|A7SUL5_NEMVE Predicted protein OS=Nematostella vectens...    45   0.002
tr|A7TC50|A7TC50_NEMVE Predicted protein (Fragment) OS=Nematoste...    44   0.004
tr|A7T0Q6|A7T0Q6_NEMVE Predicted protein (Fragment) OS=Nematoste...    44   0.004
tr|Q00Y82|Q00Y82_OSTTA Chromosome 12 contig 1, DNA sequence OS=O...    42   0.015
tr|A7P589|A7P589_VITVI Chromosome chr4 scaffold_6, whole genome ...    41   0.026
tr|B3SDB9|B3SDB9_TRIAD Putative uncharacterized protein OS=Trich...    39   0.098
tr|B3SAB1|B3SAB1_TRIAD Putative uncharacterized protein OS=Trich...    39   0.098

>tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_102707 PE=4 SV=1
          Length = 220

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = -1

Query: 127 DAQADMPLDEPRAQVAFKDSMNRGILQFTLRIAFRCVLHRCK 2
           DA A MP DEPRAQ+AFK+SM  GILQFTLRIAFRCVLHRCK
Sbjct: 173 DALAGMPSDEPRAQLAFKNSMIHGILQFTLRIAFRCVLHRCK 214


>tr|A9U7C6|A9U7C6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_158157 PE=4 SV=1
          Length = 148

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/34 (88%), Positives = 34/34 (100%)
 Frame = -3

Query: 104 GRAAGASCVQRLDESRNSAIHTTYRISLRSSSLQ 3
           GRA+GA+CVQ+LD+SRNSAIHTTYRISLRSSSLQ
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQ 34


>tr|A9U5X4|A9U5X4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157309 PE=4 SV=1
          Length = 148

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/34 (88%), Positives = 34/34 (100%)
 Frame = -3

Query: 104 GRAAGASCVQRLDESRNSAIHTTYRISLRSSSLQ 3
           GRA+GA+CVQ+LD+SRNSAIHTTYRISLRSSSLQ
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQ 34


>tr|A9U5I5|A9U5I5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157118 PE=4 SV=1
          Length = 130

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/34 (88%), Positives = 34/34 (100%)
 Frame = -3

Query: 104 GRAAGASCVQRLDESRNSAIHTTYRISLRSSSLQ 3
           GRA+GA+CVQ+LD+SRNSAIHTTYRISLRSSSLQ
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQ 34


>tr|A9U6L7|A9U6L7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157771 PE=4 SV=1
          Length = 88

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 29/34 (85%), Positives = 34/34 (100%)
 Frame = -3

Query: 104 GRAAGASCVQRLDESRNSAIHTTYRISLRSSSLQ 3
           GRA+GA+CVQ+LD+SR+SAIHTTYRISLRSSSLQ
Sbjct: 1   GRASGATCVQKLDDSRDSAIHTTYRISLRSSSLQ 34


>tr|Q0WWS3|Q0WWS3_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 80

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +2

Query: 11  MKNAAKCDT*CELQNSAIHRVFERNLRPR-LVQGHVCLSV 127
           MKN AKCDT CELQN   HRVFER LRP+   +GHVCL V
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGV 40


>tr|B8CEF4|B8CEF4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_30335 PE=4 SV=1
          Length = 79

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = -1

Query: 97  PRAQVAFKDSMNRGILQFTLRIAFRCVLHRC 5
           P+AQ AFK  M   +LQF LRIAFRCVLHRC
Sbjct: 42  PKAQCAFKSLMIHEVLQFALRIAFRCVLHRC 72


>tr|A7TBY8|A7TBY8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g154198 PE=4 SV=1
          Length = 58

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = -3

Query: 107 LGRAAGASCVQRLDESRNSAIHTTYRISLRSSSL 6
           LG+   A CVQR D+S NSAIHTTYR  LRSSS+
Sbjct: 3   LGKPKSAICVQRFDDSLNSAIHTTYRTWLRSSSM 36


>tr|A7T6D5|A7T6D5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g147740 PE=4 SV=1
          Length = 59

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = -3

Query: 107 LGRAAGASCVQRLDESRNSAIHTTYRISLRSSSL 6
           LG+   A CVQR D+S NSAIHTTYR  LRSSS+
Sbjct: 3   LGKPKSAICVQRFDDSLNSAIHTTYRTWLRSSSM 36


>tr|A7T247|A7T247_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g142715 PE=4 SV=1
          Length = 52

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = -3

Query: 107 LGRAAGASCVQRLDESRNSAIHTTYRISLRSSSL 6
           LG+   A CVQR D+S NSAIHTTYR  LRSSS+
Sbjct: 3   LGKPKSAICVQRFDDSLNSAIHTTYRTWLRSSSM 36