DK945501 |
Clone id |
YMU02A01NGRL0009_I13 |
Library |
YMU02 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_I13. 5' end sequence. |
Accession |
DK945501 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2730Contig1 |
Sequence |
GTGATGCAACAGCTTTTGTCTAAAGAGGTTCTCCATGAACCCATGAAGGAGTTCCGTGAG AAGTACCCAAATTGGTTGGAAGTCAACAAGTCTTCACTTAGTGATGAGGATTTTCGTCGG TACTCAAGGCAGTATGAGTACATTAAAGAGTTATGTGGTGTCCATGAGTCAACTCCGGAT GATTTCTCTAGAATTGTTGACATCATGCAAAATATGCAAACATGTGGACAGCCCCCAGAT GACCTTGTACAAGAGCTTGGACCAGGCATGGACCTTAAAGGAGATGGCTTACCCTTTCTC TCAGACTTCCTGAAAGAAGGTAATCAAAGTGCTGGAGCAAACCAGAATTGCAGCATGATG TGAGCGCAGACACATATTTTGCAGCAAGCCCTCTTTGTTTCACTTTTCCTTGATTCAGTT TGTTTCATACATAAACCTGAAGGTTAAAGAGTGATCAGATGCTTTGACCCTGGAAAACGC TCAATAAAAATGTTTTGCATATGAAGAAAGTGAATTTCATGCAGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5R7U2 |
Definition |
sp|Q5R7U2|PEX19_PONAB Peroxisomal biogenesis factor 19 OS=Pongo abelii |
Align length |
106 |
Score (bit) |
82.8 |
E-value |
9.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945501|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_I13, 5' (524 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5R7U2|PEX19_PONAB Peroxisomal biogenesis factor 19 OS=Pongo ... 83 9e-16 sp|P40855|PEX19_HUMAN Peroxisomal biogenesis factor 19 OS=Homo s... 83 9e-16 sp|Q9QYU1|PEX19_RAT Peroxisomal biogenesis factor 19 OS=Rattus n... 82 2e-15 sp|Q60415|PEX19_CRIGR Peroxisomal biogenesis factor 19 OS=Cricet... 81 3e-15 sp|Q3SZD1|PEX19_BOVIN Peroxisomal biogenesis factor 19 OS=Bos ta... 81 3e-15 sp|Q8VCI5|PEX19_MOUSE Peroxisomal biogenesis factor 19 OS=Mus mu... 81 3e-15 sp|P34453|PEX19_CAEEL Putative peroxisomal biogenesis factor 19 ... 70 8e-12 sp|Q07418|PEX19_YEAST Peroxisomal membrane protein import recept... 49 1e-05 sp|A6ZXR1|PEX19_YEAS7 Peroxisomal membrane protein import recept... 49 1e-05 sp|Q10485|YDFE_SCHPO Uncharacterized protein C17C9.14 OS=Schizos... 42 0.002 sp|P04569|SCP1_BRALA Sarcoplasmic calcium-binding proteins I, II... 36 0.13 sp|P04570|SCP2_BRALA Sarcoplasmic calcium-binding proteins II, V... 34 0.37 sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan... 34 0.48 sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Hom... 34 0.48 sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattu... 33 0.63 sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pon... 33 0.63 sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus... 33 0.63 sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Mac... 33 0.63 sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Can... 33 0.63 sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos... 33 0.63 sp|Q555I0|PEX19_DICDI Putative peroxisomal biogenesis factor 19 ... 32 1.8 sp|A7ZAI5|HTPG_BACA2 Chaperone protein htpG OS=Bacillus amyloliq... 32 1.8 sp|P46208|HTPG_BACSU Chaperone protein htpG OS=Bacillus subtilis... 32 2.4 sp|P71789|Y1510_MYCTU Uncharacterized protein Rv1510/MT1558/MT15... 30 5.3 sp|Q60988|STIL_MOUSE SCL-interrupting locus protein homolog OS=M... 30 5.3 sp|Q9Y4B5|K0802_HUMAN Uncharacterized protein KIAA0802 OS=Homo s... 30 5.3 sp|Q24SS5|PRMA_DESHY Ribosomal protein L11 methyltransferase OS=... 30 7.0 sp|P00439|PH4H_HUMAN Phenylalanine-4-hydroxylase OS=Homo sapiens... 30 7.0 sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus GN... 30 9.1 sp|Q07438|YD071_YEAST Putative uncharacterized protein YDL071C O... 30 9.1
>sp|Q5R7U2|PEX19_PONAB Peroxisomal biogenesis factor 19 OS=Pongo abelii GN=PEX19 PE=2 SV=1 Length = 299
Score = 82.8 bits (203), Expect = 9e-16 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLSK+VL+ +KE EKYP WL+ ++ SL E F +Y Q+ + ++C E+ TP Sbjct: 178 IMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDAL 283
>sp|P40855|PEX19_HUMAN Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=1 SV=1 Length = 299
Score = 82.8 bits (203), Expect = 9e-16 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLSK+VL+ +KE EKYP WL+ ++ SL E F +Y Q+ + ++C E+ TP Sbjct: 178 IMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDAL 283
>sp|Q9QYU1|PEX19_RAT Peroxisomal biogenesis factor 19 OS=Rattus norvegicus GN=Pex19 PE=2 SV=1 Length = 299
Score = 81.6 bits (200), Expect = 2e-15 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLSK+VL+ +KE EKYP WL+ ++ S+ E F +Y +Q+ + ++C E+ TP Sbjct: 178 LMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQQQHSVMGKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSEATHRARFEAVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDAL 283
>sp|Q60415|PEX19_CRIGR Peroxisomal biogenesis factor 19 OS=Cricetulus griseus GN=PEX19 PE=1 SV=1 Length = 299
Score = 81.3 bits (199), Expect = 3e-15 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLSK+VL+ +KE EKYP WL+ ++ S+ E F +Y Q+ + ++C E+ TP Sbjct: 178 IMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQEQHSVMGKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSEATHRARFEAVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDTL 283
>sp|Q3SZD1|PEX19_BOVIN Peroxisomal biogenesis factor 19 OS=Bos taurus GN=PEX19 PE=2 SV=1 Length = 299
Score = 81.3 bits (199), Expect = 3e-15 Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLS++VL+ +KE EKYP WL ++ SL E F +Y Q+ + ++C E+ TP Sbjct: 178 IMQNLLSRDVLYPSLKEITEKYPEWLRAHRDSLPPEQFEKYQEQHSVMGKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSEATQKARFEVVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDAL 283
>sp|Q8VCI5|PEX19_MOUSE Peroxisomal biogenesis factor 19 OS=Mus musculus GN=Pex19 PE=1 SV=1 Length = 299
Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 9/106 (8%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHES-TP 177 +MQ LLSK+VL+ +KE EKYP WL+ ++ S E F +Y +Q+ + ++C E+ TP Sbjct: 178 IMQNLLSKDVLYPSLKEITEKYPEWLQSHQDSTPPEQFEKYQQQHSVMVKICEQFEAETP 237
Query: 178 DD--------FSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 D F ++D+MQ +Q G PP +L E+ PG++ D L Sbjct: 238 TDSEATQRARFEAMLDLMQQLQALGHPPKELAGEMPPGLNFDLDAL 283
>sp|P34453|PEX19_CAEEL Putative peroxisomal biogenesis factor 19 OS=Caenorhabditis elegans GN=prx-19 PE=1 SV=1 Length = 282
Score = 69.7 bits (169), Expect = 8e-12 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 23/143 (16%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHESTP- 177 +MQ L SKEV++ P+KE + YP +LE N + L E RY +Q+E + ++C E P Sbjct: 147 IMQTLASKEVMYPPLKEIFDNYPKYLEDNGAGLDAETKERYEKQFEVLGKICTEFEKQPE 206
Query: 178 ----------------------DDFSRIVDIMQNMQTCGQPPDDLVQELGPGMDLKGDGL 291 + F ++ ++ +Q G PP +LV L G + GL Sbjct: 207 LAEVQPVDAATQPAPEADPASIEHFEKLGKLLVELQQYGYPPKELVGALPDGWQIDESGL 266
Query: 292 PFLSDFLKEGNQSAGANQNCSMM 360 P ++D +A A + CS+M Sbjct: 267 PKVAD-------AAAATEACSIM 282
>sp|Q07418|PEX19_YEAST Peroxisomal membrane protein import receptor PEX19 OS=Saccharomyces cerevisiae GN=PEX19 PE=1 SV=2 Length = 342
Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVN-KSSLSDEDFRRYSRQYEYIKELCGVHESTP 177 ++ Q+ SKEVL+EPMKE R ++ W + N ++ E Y RQ+ + E+ ++E Sbjct: 215 ILDQMTSKEVLYEPMKEMRSEFGVWFQENGENEEHKEKIGTYKRQFNIVDEIVNIYELKD 274
Query: 178 DD----FSRIVDIMQNMQTCGQPP 237 D R+ +++ ++ G P Sbjct: 275 YDELKHKDRVTELLDELEQLGDSP 298
>sp|A6ZXR1|PEX19_YEAS7 Peroxisomal membrane protein import receptor PEX19 OS=Saccharomyces cerevisiae (strain YJM789) GN=PEX19 PE=2 SV=2 Length = 341
Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVN-KSSLSDEDFRRYSRQYEYIKELCGVHESTP 177 ++ Q+ SKEVL+EPMKE R ++ W + N ++ E Y RQ+ + E+ ++E Sbjct: 214 ILDQMTSKEVLYEPMKEMRSEFGVWFQENGENEEHKEKIGTYKRQFNIVDEIVNIYELKD 273
Query: 178 DD----FSRIVDIMQNMQTCGQPP 237 D R+ +++ ++ G P Sbjct: 274 YDELKHKDRVTELLDELEQLGDSP 297
>sp|Q10485|YDFE_SCHPO Uncharacterized protein C17C9.14 OS=Schizosaccharomyces pombe GN=SPAC17C9.14 PE=2 SV=1 Length = 232
Score = 41.6 bits (96), Expect = 0.002 Identities = 20/72 (27%), Positives = 40/72 (55%) Frame = +1
Query: 1 VMQQLLSKEVLHEPMKEFREKYPNWLEVNKSSLSDEDFRRYSRQYEYIKELCGVHESTPD 180 +M Q+ SKE+L+EP+K+ YP +L+ + + + + + QY+ I++ + ES Sbjct: 139 LMSQVTSKEILYEPLKDLEANYPKFLK----NAKETEKQGFEEQYQKIQKCIQIFESPEY 194
Query: 181 DFSRIVDIMQNM 216 D + DI+ + Sbjct: 195 DARKDADIISKL 206
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NRV0 |
Definition |
tr|A9NRV0|A9NRV0_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
120 |
Score (bit) |
145.0 |
E-value |
9.0e-34 |
Report |
|