DK945512
Clone id YMU02A01NGRL0009_J02
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_J02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AATCACAGAGGAGCTCCTACAGTGCTCTCTCCTCTCCTCCTCCGCAAATTCGAGCTTGAT
CTGCGTTTTCCTCTCTTCTTGCAGTACTTCAGATCTCAAGAGTAACCTCCCTTATCACAA
TGGCTCTCTCTCAAATCAGTGGAAGGATTGCTTTCTCCAATCTTGTTACCATCCTCGTGG
TGATGGGTGTTTTGGCAATGGCCGGACAAAGTGCAATGGCACAAGTTGAACCTCCTACTC
CAACTCCCACAACTGGTGATGATAATGCTGCTACTTTAACCCCAGTTGCGTTTCTTGCCA
CGGCTTTTGCCTCTCTCCTTGTTGGAGTGTTTTTGAGCTACTAATTCTTTCAATCATGTG
AGCACATTGAGAGGGAGTGGCAACTTTTGTATTTGACCTACCCTACATATGATGAGTTAC
GAGACACACCGTAGGAACTCCAGCTCCCATTTCCTACCTATACCTAGCGATTTCATTATT
CATTCATTTTCTAGAGTTTGAGATGTATTCTGGTGGTTTTTGTGAATAATAAATATTGAC
TAGTCTTCTTTC
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945512|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J02, 5'
(552 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE... 32 2.0
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p... 32 2.0
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE... 30 6.0
sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae ... 30 7.8

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
SV=1
Length = 798

Score = 32.0 bits (71), Expect = 2.0
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +2

Query: 155 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 322
+ SC P G C G+GR KCN C Y+ C C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
protein hypB OS=Synechocystis sp. (strain PCC 6803)
GN=hypB PE=3 SV=1
Length = 285

Score = 32.0 bits (71), Expect = 2.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2

Query: 221 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 99
C C+ G ++HHH S+ D +E H G YS
Sbjct: 5 CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
SV=2
Length = 769

Score = 30.4 bits (67), Expect = 6.0
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2

Query: 158 QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 322
+ C +PR C G GR +CN H+ Y P C C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae
GN=RNH1 PE=1 SV=2
Length = 348

Score = 30.0 bits (66), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2

Query: 62 CVFLSSCSTS---DLKSNLPYHNGSLSNQWKDC 151
C LSS +T+ +KSN+P + N WKDC
Sbjct: 97 CSSLSSANTNTFYSVKSNVPNIESKIFNNWKDC 129


tr_hit_id Q22Z13
Definition tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210
Align length 88
Score (bit) 40.4
E-value 0.063
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945512|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J02, 5'
(552 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ... 40 0.063
tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1 35 2.7

>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family
protein OS=Tetrahymena thermophila SB210
GN=TTHERM_00117540 PE=4 SV=2
Length = 2236

Score = 40.4 bits (93), Expect = 0.063
Identities = 27/88 (30%), Positives = 40/88 (45%)
Frame = +2

Query: 65 VFLSSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSN 244
V + CS D S+ NGS SN C LQ + P+ C T CN ++
Sbjct: 1621 VLSNQCSLCD--SSCYTCNGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNS 1674

Query: 245 SHNW***CCYFNPSCVSCHGFCLSPCWS 328
+ C + +PSC++C+G +S C S
Sbjct: 1675 NK-----CIFCDPSCLTCNGPQISNCTS 1697



Score = 35.8 bits (81), Expect = 1.5
Identities = 28/92 (30%), Positives = 39/92 (42%)
Frame = +2

Query: 74 SSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 253
+ CS D S+ NGS SN C LQ + P+ C + CN S +
Sbjct: 1224 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL- 1276

Query: 254 W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 349
C +PSC++C+G S C S + L L
Sbjct: 1277 ----CKICDPSCLTCNGSQSSNCTSCRQGLFL 1304



Score = 35.0 bits (79), Expect = 2.6
Identities = 28/92 (30%), Positives = 39/92 (42%)
Frame = +2

Query: 74 SSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 253
+ CS D S+ NGS SN C LQ + P+ C T CN S++
Sbjct: 1024 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL- 1076

Query: 254 W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 349
C + SC++C+G S C S + L L
Sbjct: 1077 ----CKVCDSSCLTCNGSYSSNCTSCRQGLFL 1104


>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1
Length = 309

Score = 35.0 bits (79), Expect = 2.7
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1

Query: 360 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 181
H++E I+ T + R+K + E + H+HHQL E P+HF P P
Sbjct: 68 HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122

Query: 180 PR 175
PR
Sbjct: 123 PR 124