BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945512|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J02, 5'
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE...    32   2.0  
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p...    32   2.0  
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE...    30   6.0  
sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae ...    30   7.8  

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
           SV=1
          Length = 798

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = +2

Query: 155 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 322
           + SC  P G  C G+GR KCN                C   Y+   C  C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
           protein hypB OS=Synechocystis sp. (strain PCC 6803)
           GN=hypB PE=3 SV=1
          Length = 285

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 221 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 99
           C C+  G   ++HHH        S+   D +E H   G YS
Sbjct: 5   CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
           SV=2
          Length = 769

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +2

Query: 158 QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 322
           + C +PR   C G GR +CN          H+      Y  P C  C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae
           GN=RNH1 PE=1 SV=2
          Length = 348

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 62  CVFLSSCSTS---DLKSNLPYHNGSLSNQWKDC 151
           C  LSS +T+    +KSN+P     + N WKDC
Sbjct: 97  CSSLSSANTNTFYSVKSNVPNIESKIFNNWKDC 129

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945512|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J02, 5'
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ...    40   0.063
tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1    35   2.7  

>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family
            protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_00117540 PE=4 SV=2
          Length = 2236

 Score = 40.4 bits (93), Expect = 0.063
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = +2

Query: 65   VFLSSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSN 244
            V  + CS  D  S+    NGS SN    C LQ  + P+   C     T CN       ++
Sbjct: 1621 VLSNQCSLCD--SSCYTCNGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNS 1674

Query: 245  SHNW***CCYFNPSCVSCHGFCLSPCWS 328
            +      C + +PSC++C+G  +S C S
Sbjct: 1675 NK-----CIFCDPSCLTCNGPQISNCTS 1697



 Score = 35.8 bits (81), Expect = 1.5
 Identities = 28/92 (30%), Positives = 39/92 (42%)
 Frame = +2

Query: 74   SSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 253
            + CS  D  S+    NGS SN    C LQ  + P+   C  +    CN       S +  
Sbjct: 1224 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL- 1276

Query: 254  W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 349
                C   +PSC++C+G   S C S  + L L
Sbjct: 1277 ----CKICDPSCLTCNGSQSSNCTSCRQGLFL 1304



 Score = 35.0 bits (79), Expect = 2.6
 Identities = 28/92 (30%), Positives = 39/92 (42%)
 Frame = +2

Query: 74   SSCSTSDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 253
            + CS  D  S+    NGS SN    C LQ  + P+   C     T CN       S++  
Sbjct: 1024 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL- 1076

Query: 254  W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 349
                C   + SC++C+G   S C S  + L L
Sbjct: 1077 ----CKVCDSSCLTCNGSYSSNCTSCRQGLFL 1104


>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1
          Length = 309

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 360 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 181
           H++E I+   T +   R+K + E    +   H+HHQL   E      P+HF  P P    
Sbjct: 68  HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122

Query: 180 PR 175
           PR
Sbjct: 123 PR 124