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DK945514
Clone id YMU02A01NGRL0009_J04
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_J04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGCTTTTGTTCACTGGTACGTTGGTGAGGGCATGGAGGAAGGAGAGTTCTCCGAGGCACG
TGAAGATCTTGCCGCTTTGGAAAAGGACTATGAGGAGGTTGGAGCTGAGTCTGCTGATGG
TGATGATGTGGATCCTGAAGAGTATTGATGATGAAAGCTGCATGCAATCATTATCTAAAC
TACTGATTATTAGTAGCTCAGGAGCCAGGGCAGTTATCTTTTTTTCTCTTTAAAATTTCA
AAGAATGCCTCGCCGGGGCTTCTGTTTAAGCGGGGAGTGTATCAGTGTGCTTGGGTTTGA
TGTATCTTTCTTAATTATTATCATACGGATTTGTGCTTTAAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6VAF9
Definition sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum
Align length 48
Score (bit) 92.8
E-value 5.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945514|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J04, 5'
         (339 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum...    93   5e-19
sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum...    91   1e-18
sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA ...    91   2e-18
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA...    90   3e-18
sp|P46259|TBA1_PEA Tubulin alpha-1 chain OS=Pisum sativum GN=TUB...    90   4e-18
sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus ...    89   9e-18
sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=...    89   9e-18
sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=...    89   9e-18
sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus grise...    89   9e-18
sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thalia...    88   1e-17
sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidopsi...    88   1e-17
sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain OS=Oryza sativa subsp...    88   1e-17
sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei rh...    88   2e-17
sp|Q6VAG1|TBA1_GOSHI Tubulin alpha-1 chain OS=Gossypium hirsutum...    88   2e-17
sp|P11139|TBA1_ARATH Tubulin alpha-1 chain OS=Arabidopsis thalia...    87   2e-17
sp|Q3ZCJ7|TBA1C_BOVIN Tubulin alpha-1C chain OS=Bos taurus GN=TU...    87   2e-17
sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain OS=Chlorella vulgaris GN...    87   3e-17
sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain OS=Anemia phyllitidis...    87   3e-17
sp|P08537|TBA_XENLA Tubulin alpha chain OS=Xenopus laevis GN=tub...    86   4e-17
sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=...    86   4e-17
sp|P33625|TBA_EUGGR Tubulin alpha chain OS=Euglena gracilis GN=T...    86   4e-17
sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1       86   4e-17
sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila melanog...    86   4e-17
sp|Q40831|TBA1_PELFA Tubulin alpha-1 chain OS=Pelvetia fastigiat...    86   4e-17
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain OS=Homarus americanus...    86   4e-17
sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanog...    86   4e-17
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain (Fragment) OS=Gallus ...    86   6e-17
sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain OS=Eleusine indica GN...    86   6e-17
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Onc...    86   8e-17
sp|P20363|TBA3_ARATH Tubulin alpha-3/alpha-5 chain OS=Arabidopsi...    86   8e-17

>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 450

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES +GD+ D EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 450


>sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 450

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 41/48 (85%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AF+HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GD+ + +EY
Sbjct: 403 AFIHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDEGEDDEY 450


>sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA
           PE=2 SV=1
          Length = 451

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 43/47 (91%), Positives = 44/47 (93%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEE 142
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD D  E
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDEDEGE 449


>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA
           PE=2 SV=1
          Length = 450

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 41/48 (85%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+G+D + ++Y
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDEGDDY 450


>sp|P46259|TBA1_PEA Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1
           PE=3 SV=1
          Length = 452

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 44/50 (88%), Positives = 45/50 (90%), Gaps = 2/50 (4%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDD--VDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES DGDD  +  EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDDGLGEEEY 452


>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus
           GN=Tuba1c PE=1 SV=1
          Length = 449

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGA+SA+GDD + EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDD-EGEEY 449


>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus
           GN=Tuba1c PE=1 SV=1
          Length = 449

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGA+SA+GDD + EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDD-EGEEY 449


>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens
           GN=TUBA1C PE=1 SV=1
          Length = 449

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGA+SADG+D + EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGED-EGEEY 449


>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus
           GN=TUBA1C PE=2 SV=1
          Length = 449

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGA+SA+GDD + EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDD-EGEEY 449


>sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thaliana
           GN=TUBA6 PE=2 SV=1
          Length = 450

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 41/48 (85%), Positives = 43/48 (89%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D +D + EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY 450
tr_hit_id A5YRY0
Definition tr|A5YRY0|A5YRY0_POPTM Alpha-tubulin 3 OS=Populus tremuloides
Align length 48
Score (bit) 94.7
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945514|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J04, 5'
         (339 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5YRY0|A5YRY0_POPTM Alpha-tubulin 3 OS=Populus tremuloides PE...    95   2e-18
tr|A9PDP4|A9PDP4_POPTR Putative uncharacterized protein OS=Popul...    94   3e-18
tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Popul...    94   3e-18
tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Popul...    94   3e-18
tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE...    94   3e-18
tr|A8DSD0|A8DSD0_POPTM Alpha-tubulin 7 OS=Populus tremuloides PE...    94   3e-18
tr|B2BGT6|B2BGT6_OLEEU Putative alpha-tubulin (Fragment) OS=Olea...    93   6e-18
tr|Q9SQ72|Q9SQ72_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    93   8e-18
tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    93   8e-18
tr|A7QH45|A7QH45_VITVI Chromosome chr3 scaffold_95, whole genome...    93   8e-18
tr|A5AEW2|A5AEW2_VITVI Putative uncharacterized protein OS=Vitis...    93   8e-18
tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan PE=2 SV=1    92   1e-17
tr|Q9SQ75|Q9SQ75_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    92   1e-17
tr|A9PL15|A9PL15_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    92   1e-17
tr|Q9SQ73|Q9SQ73_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    92   2e-17
tr|Q7Y246|Q7Y246_GOSBA Alpha-tubulin (Fragment) OS=Gossypium bar...    92   2e-17
tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    92   2e-17
tr|Q9SQ74|Q9SQ74_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    91   2e-17
tr|Q2MIR4|Q2MIR4_CAMSI Alpha tubulin 1 OS=Camellia sinensis GN=T...    91   2e-17
tr|Q1EMQ0|Q1EMQ0_PLAMJ Alpha tubulin (Fragment) OS=Plantago majo...    91   2e-17
tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1     91   2e-17
tr|A4ZYP1|A4ZYP1_CAPAN Alpha tubulin OS=Capsicum annuum PE=2 SV=1      91   3e-17
tr|Q93XB1|Q93XB1_ROSHC Alpha tubulin subunit OS=Rosa hybrid cult...    90   5e-17
tr|A9SEI4|A9SEI4_PHYPA Predicted protein OS=Physcomitrella paten...    90   5e-17
tr|Q7ZTP0|Q7ZTP0_XENLA MGC53359 protein OS=Xenopus laevis GN=tub...    90   6e-17
tr|Q8VXD1|Q8VXD1_TOBAC Alpha-tubulin OS=Nicotiana tabacum GN=tub...    90   6e-17
tr|A7PMS7|A7PMS7_VITVI Chromosome chr14 scaffold_21, whole genom...    90   6e-17
tr|A7KQH5|A7KQH5_EUCGR Alpha-tubulin OS=Eucalyptus grandis GN=TU...    90   6e-17
tr|Q39719|Q39719_EUCGL Alpha-tubulin (Fragment) OS=Eucalyptus gl...    89   1e-16
tr|Q5EB23|Q5EB23_XENTR MGC97820 protein OS=Xenopus tropicalis GN...    89   1e-16

>tr|A5YRY0|A5YRY0_POPTM Alpha-tubulin 3 OS=Populus tremuloides PE=2
           SV=1
          Length = 451

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD D +EY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDEDGDEY 450


>tr|A9PDP4|A9PDP4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 75

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD D +EY
Sbjct: 27  AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDDDGDEY 74


>tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 451

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD D +EY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDDDGDEY 450


>tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 451

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+G+D D EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDEDGEEY 450


>tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE=2
           SV=1
          Length = 451

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD D +EY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDDDGDEY 450


>tr|A8DSD0|A8DSD0_POPTM Alpha-tubulin 7 OS=Populus tremuloides PE=2
           SV=1
          Length = 451

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+G+D D EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDDGEEY 450


>tr|B2BGT6|B2BGT6_OLEEU Putative alpha-tubulin (Fragment) OS=Olea
           europaea PE=2 SV=1
          Length = 63

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+G+D D E+Y
Sbjct: 16  AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDEDGEDY 63


>tr|Q9SQ72|Q9SQ72_GOSHI Alpha-tubulin (Fragment) OS=Gossypium
           hirsutum GN=TubA4 PE=2 SV=1
          Length = 127

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES +GD+ D EEY
Sbjct: 80  AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 127


>tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA10
           PE=2 SV=1
          Length = 450

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES +GD+ D EEY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGDEGDEEEY 450


>tr|A7QH45|A7QH45_VITVI Chromosome chr3 scaffold_95, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038615001
           PE=3 SV=1
          Length = 450

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = +2

Query: 2   AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGDDVDPEEY 145
           AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA+GDD + +EY
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDDEGDEY 450