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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945530
Clone id YMU02A01NGRL0009_J22
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_J22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TTTTTTCCTGAAAAAAAAAAAAAAGAAAAAACTAAAAATAAAAAAAAAAAAAAAAAAAAA
AAATGAGTCAGCCGCCCCGGCCCACAATAACTTTTATAGACAATTTTTTTGGCGCACAGG
ACATGTATTTAATTAAAATTGCTCCAAAATTTTACCTAGAATAACCAGTCCCTGAACACA
GTCTGTATTCGAACTAATAAAAAAAGCCGAGAAGCAACAAAGCTTTCGGAACAAATCCAA
ATAGGAGTTCTAAGTTCATACTCTCGCGATCTATAAAAATAAAGTCAAAACATATCTCGA
TATCACATTACACACCGCTCAGTCATCCTCACTAAAACTGATATAATTAATCAAGCATTC
AGCCTACGAATAAACCATCCCAGACTTGTCAAGATAACTGAACATCTCTCTGCATCAACA
CCATGCCTCCTTGCAACAAATATTTGACACATATGTACACAGGGGCTAATATCCTGA
■■Homology search results ■■ -
sp_hit_id P62580
Definition sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmonella typhi
Align length 44
Score (bit) 35.0
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945530|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J22, 5'
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmone...    35   0.17 
sp|P58777|CAT_KLESP Chloramphenicol acetyltransferase OS=Klebsie...    35   0.17 
sp|P62577|CAT_ECOLX Chloramphenicol acetyltransferase OS=Escheri...    35   0.17 
sp|P62579|CAT_ACIBA Chloramphenicol acetyltransferase OS=Acineto...    35   0.17 
sp|P62578|CAT_ACIAN Chloramphenicol acetyltransferase OS=Acineto...    35   0.17 
sp|P07641|CAT_PROMI Chloramphenicol acetyltransferase OS=Proteus...    33   0.65 
sp|O42656|RIC1_SCHPO Protein ric1 OS=Schizosaccharomyces pombe G...    30   4.2  

>sp|P62580|CAT_SALTI Chloramphenicol acetyltransferase OS=Salmonella
           typhi GN=cat PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>sp|P58777|CAT_KLESP Chloramphenicol acetyltransferase OS=Klebsiella
           sp. GN=cat PE=1 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>sp|P62577|CAT_ECOLX Chloramphenicol acetyltransferase
           OS=Escherichia coli GN=cat PE=1 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>sp|P62579|CAT_ACIBA Chloramphenicol acetyltransferase
           OS=Acinetobacter baumannii GN=cat PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>sp|P62578|CAT_ACIAN Chloramphenicol acetyltransferase
           OS=Acinetobacter calcoaceticus subsp. anitratus GN=cat
           PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>sp|P07641|CAT_PROMI Chloramphenicol acetyltransferase OS=Proteus
           mirabilis GN=cat PE=3 SV=1
          Length = 217

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG +L+ + Q+
Sbjct: 168 APVFTIGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRLLNEIQQY 211


>sp|O42656|RIC1_SCHPO Protein ric1 OS=Schizosaccharomyces pombe
           GN=ric1 PE=1 SV=2
          Length = 1052

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 284 LYFYRSREYELRTPIWICSESFVASRLFLLVRIQTVF 174
           L+   S++Y+LR   W    S + SRL+  V+I T F
Sbjct: 168 LWKVSSKQYDLREVTWFLDHSSLISRLYFDVKIDTFF 204
tr_hit_id Q3HNN0
Definition tr|Q3HNN0|Q3HNN0_SALTY Chloramphenicol acetyltransferase (Fragment) OS=Salmonella typhimurium
Align length 44
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945530|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J22, 5'
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3HNN0|Q3HNN0_SALTY Chloramphenicol acetyltransferase (Fragme...    37   0.64 
tr|A8PCR6|A8PCR6_BRUMA MGC26979 protein, putative OS=Brugia mala...    35   1.4  
tr|Q7AK95|Q7AK95_9ZZZZ Chloramphenycol acetyltransferase OS=Plas...    35   1.9  
tr|Q799H7|Q799H7_9ZZZZ Chloramphenicol marker OS=Cloning vector ...    35   1.9  
tr|B0VCL0|B0VCL0_ACIBY Chloramphenicol acetyltransferase (CAT) O...    35   1.9  
tr|A6TJ41|A6TJ41_KLEP7 Chloramphenicol acetyltransferase OS=Kleb...    35   1.9  
tr|A4V983|A4V983_SALPK Chloramphenicol acetyltransferase OS=Salm...    35   1.9  
tr|Q93F28|Q93F28_SHIFL Chloramphenicol acetyltransferase OS=Shig...    35   1.9  
tr|Q79PA8|Q79PA8_KLEPN Chloramphenicol acetyltransferase OS=Kleb...    35   1.9  
tr|Q712M7|Q712M7_CORGL Chloramphenicol acetyltransferase OS=Cory...    35   1.9  
tr|Q6MXT6|Q6MXT6_SERMA Chloramphenicol acetyltransferase OS=Serr...    35   1.9  
tr|Q6J0R8|Q6J0R8_ECOLX Chloramphenicol acetyltransferase OS=Esch...    35   1.9  
tr|Q6IWJ0|Q6IWJ0_SALPU Chloramphenicol acetyltransferase (Fragme...    35   1.9  
tr|Q5YFS3|Q5YFS3_ALCXX Chloramphenicol acetyltransferase OS=Alca...    35   1.9  
tr|Q59655|Q59655_PASPI Chloramphenicol acetyltransferase OS=Past...    35   1.9  
tr|Q573N9|Q573N9_9BACT Chloramphenicol acetyltransferase OS=uncu...    35   1.9  
tr|Q4VY50|Q4VY50_AERHY Chloramphenicol acetyltransferase OS=Aero...    35   1.9  
tr|Q2FCZ0|Q2FCZ0_ACIBA Chloramphenicol acetyltransferase OS=Acin...    35   1.9  
tr|B7I2J0|B7I2J0_ACIBA Chloramphenicol O-acetyltransferase OS=Ac...    35   1.9  
tr|B6UPG8|B6UPG8_NEIGO Chloramphenicol acetyltransferase OS=Neis...    35   1.9  
tr|B4F4G7|B4F4G7_SALET Chloramphenicol acetyltransferase OS=Salm...    35   1.9  
tr|B3HB77|B3HB77_ECOLX Chloramphenicol O-acetyltransferase OS=Es...    35   1.9  
tr|B1A3K8|B1A3K8_ECOLX Chloramphenicol acetyltransferase (Fragme...    35   1.9  
tr|B0NIL1|B0NIL1_EUBSP Chloramphenicol acetyltransferase OS=Clos...    35   1.9  
tr|B0MJN3|B0MJN3_9FIRM Chloramphenicol acetyltransferase OS=Euba...    35   1.9  
tr|A8R6P0|A8R6P0_SALET Chloramphenicol acetyltransferase OS=Salm...    35   1.9  
tr|A7UXY8|A7UXY8_BACUN Chloramphenicol acetyltransferase OS=Bact...    35   1.9  
tr|A7AE46|A7AE46_9PORP Chloramphenicol acetyltransferase OS=Para...    35   1.9  
tr|A7A2H6|A7A2H6_BIFAD Chloramphenicol acetyltransferase OS=Bifi...    35   1.9  
tr|A6P250|A6P250_9BACE Chloramphenicol acetyltransferase OS=Bact...    35   1.9  

>tr|Q3HNN0|Q3HNN0_SALTY Chloramphenicol acetyltransferase (Fragment)
           OS=Salmonella typhimurium GN=cat1 PE=3 SV=1
          Length = 183

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DGL VG ML+ L Q+
Sbjct: 135 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGLHVGRMLNELQQY 178


>tr|A8PCR6|A8PCR6_BRUMA MGC26979 protein, putative OS=Brugia malayi
           GN=Bm1_22085 PE=4 SV=1
          Length = 780

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 166 QSLNTVCIRTNKKSREATKLSEQIQIGVLSSYSRDL*K*SQNISRYHITHRSVILTKTDI 345
           Q L  +C+  N + + A+  +E  +I     Y R+    +  I  YH +  S+ L++   
Sbjct: 111 QHLANICVLQNYRMQTASACTEFEKIANSMIYKRNNGLLTTPILFYHNSEASIELSRETA 170

Query: 346 INQAFSLRINHP 381
           I+ +FS  INHP
Sbjct: 171 ISASFSFNINHP 182


>tr|Q7AK95|Q7AK95_9ZZZZ Chloramphenycol acetyltransferase OS=Plasmid
           R100 GN=cat PE=4 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|Q799H7|Q799H7_9ZZZZ Chloramphenicol marker OS=Cloning vector
           pBHR1 PE=4 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|B0VCL0|B0VCL0_ACIBY Chloramphenicol acetyltransferase (CAT)
           OS=Acinetobacter baumannii (strain AYE) GN=cat PE=4 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|A6TJ41|A6TJ41_KLEP7 Chloramphenicol acetyltransferase
           OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
           700721 / MGH 78578) GN=cmlA2 PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|A4V983|A4V983_SALPK Chloramphenicol acetyltransferase
           OS=Salmonella paratyphi A (strain AKU_12601) GN=cat PE=3
           SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|Q93F28|Q93F28_SHIFL Chloramphenicol acetyltransferase
           OS=Shigella flexneri 2a GN=cat PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|Q79PA8|Q79PA8_KLEPN Chloramphenicol acetyltransferase
           OS=Klebsiella pneumoniae GN=catA1 PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211


>tr|Q712M7|Q712M7_CORGL Chloramphenicol acetyltransferase
           OS=Corynebacterium glutamicum GN=cat PE=3 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 466 APVYICVKYLLQGGMVLMQRDVQLS*QVWDGLFVG*MLD*LYQF 335
           APV+   KY  QG  VLM   +Q+   V DG  VG ML+ L Q+
Sbjct: 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211