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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945532
Clone id YMU02A01NGRL0009_J24
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_J24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGGTCGTCAAGAAGGAAGAGGCTGTGGTCTCAGTGGGCACCCCCCTAAGAAGAAGAA
ATCCTCAACTGATGAACCCGAGAAGAAAGAAAAGAAAGTATACAGCTTTCCAGGCCAGAA
ACATGACCCTCCCGATGAGAGAGATCCATTGCGCATGTTCTACGAGTCGCTGTACTCTCA
AAACTCAGCAAGCGAGATGGCGGAAATATGGATGATGGAACATGGACTTCTGGAACATGA
TGTTGCAAAGAAGGCATTCGAACGTAAGAAGAAAAATCAGGCCAGCCAGAAACTGGGATC
TCCGATCAAGCAGGTAAAAGAGAAGTCTGAGGTAAAGGTGTCTACATCTGTTGTGAAATC
CCAGAAGAAGTCTTCTGCAGAGAAACTAAGCAAGAAAAGTACCACACCAAATGGTGAAAG
CAAACAATCAAAGGTCAAGAGAGAGCGAGATTCTGATGATGAAGATGACGACTTTATTAT
TAAACCGAAAAAGAAAGCGAAGGCCAACACGTAGCACTTTGTGAGCTTGGTTAAGGTGTA
CAGGAGGCACGATGATCAACGAGAAGTGGAAGCCTACGTGTGACGGGTCCAAGGCCAATG
TAAATTGTAAGCTTCACTGTG
■■Homology search results ■■ -
sp_hit_id Q9C105
Definition sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe
Align length 111
Score (bit) 33.9
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945532|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J24, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizos...    34   0.70 
sp|Q9ESF1|OTOF_MOUSE Otoferlin OS=Mus musculus GN=Otof PE=1 SV=1       32   2.0  
sp|Q9ERC5|OTOF_RAT Otoferlin OS=Rattus norvegicus GN=Otof PE=1 SV=2    32   2.6  
sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberel...    32   3.5  
sp|Q5A660|PXR1_CANAL Protein PXR1 OS=Candida albicans GN=PXR1 PE...    31   4.5  
sp|A7XDQ9|B3GTK_ARATH Probable beta-1,3-galactosyltransferase 20...    31   5.9  
sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog O...    30   7.7  

>sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c
           OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1
          Length = 1236

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
 Frame = -2

Query: 383 SLQKTSSGISQQM*TPLPQTSLLPA*SEIPVSGWPDFSSYV----------RMPSLQHHV 234
           ++  TSS          P TS+L + S IP S   DFSS +           +PS    V
Sbjct: 517 AIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576

Query: 233 PEVHVPSSIFPPSRLLSFESTATRRTCAMDLSHREGHVSGLESCILSFLSS 81
             +   S+  P S  LS  S++T  T +   +     +S   S   + LSS
Sbjct: 577 SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSS 627


>sp|Q9ESF1|OTOF_MOUSE Otoferlin OS=Mus musculus GN=Otof PE=1 SV=1
          Length = 1997

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 29   GLSGHPPKKKKSSTDEPEKKEKKVYSFPGQKHDPPDER----DPLRMFYESLYSQNSASE 196
            GL G    K+KS   + EKK+K     PGQ  + P+++    D L+++ + L S+    +
Sbjct: 1364 GLKGPMKSKEKSRAAKEEKKKKNQSPGPGQGSEAPEKKKAKIDELKVYPKELESE---FD 1420

Query: 197  MAEIWMMEHGLL 232
              E W+    LL
Sbjct: 1421 SFEDWLHTFNLL 1432


>sp|Q9ERC5|OTOF_RAT Otoferlin OS=Rattus norvegicus GN=Otof PE=1 SV=2
          Length = 1993

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 29   GLSGHPPKKKKSSTDEPEKKEKKVYSFPGQKHDPPDER----DPLRMFYESLYSQNSASE 196
            GL G    K+KS   + EKK+K     PGQ  + P+++    D L+++ + L S+    +
Sbjct: 1360 GLKGPVKNKEKSRAAKEEKKKKNQNPGPGQGSEAPEKKKAKIDELKVYPKELESE---FD 1416

Query: 197  MAEIWMMEHGLL 232
              E W+    LL
Sbjct: 1417 NFEDWLHTFNLL 1428


>sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberella
           zeae GN=HAS1 PE=3 SV=1
          Length = 590

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 35  SGHPPKKKKSSTDEPEKKEKKVYSFPGQKHDPPDE 139
           +G  P K K S+  P+KK KKV     + HD P++
Sbjct: 15  NGVKPSKGKKSSSIPDKKSKKVKRAEPEPHDEPED 49


>sp|Q5A660|PXR1_CANAL Protein PXR1 OS=Candida albicans GN=PXR1 PE=3
           SV=1
          Length = 276

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 50  KKKKSSTDEPEKKEKKVYSFPGQKHDPPDERDPLRM-FYESLYSQNSAS 193
           KKKK   D+ +KK+KK       K D  D++D +R    E+L S+ S++
Sbjct: 191 KKKKEKKDKKDKKDKKNKKDKKDKKDKKDKKDKIRTGSDETLVSKESSA 239


>sp|A7XDQ9|B3GTK_ARATH Probable beta-1,3-galactosyltransferase 20
           OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1
          Length = 684

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
 Frame = +2

Query: 65  STDEPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASE---MAEIWMMEHGLLE 235
           ST  P    +K   F  +   PP    P R+F   L + N  SE   + + WM    +  
Sbjct: 408 STSHPSFSPQKAIEFSSEWKAPPLPGTPFRLFMGVLSATNHFSERMAVRKTWMQHPSIKS 467

Query: 236 HDVAKKAF----ERKKKNQASQK 292
            DV  + F     RK+ N   +K
Sbjct: 468 SDVVARFFVALNPRKEVNAMLKK 490


>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog
           OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3
          Length = 437

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
 Frame = +2

Query: 23  GCGLSGHPPKKKKSSTDEPEKKEKKVYSFPGQK--HDPPDERDPLRMFYESLYSQNSASE 196
           G G+S    KKKK  +++  K E  V S  G+K     P   + L   Y S   +     
Sbjct: 2   GQGVSSGQDKKKKKGSNQKPKYEPPVQSKFGRKKRKGGPATAEKLPNIYPSTRCKLKLLR 61

Query: 197 MAEIWMMEHGLLEHDVAK-----KAFERK---KKNQASQKLGSPI 307
           M  I   +H LLE +        K FE+K   +K Q  +  G+P+
Sbjct: 62  MERI--KDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPL 104
tr_hit_id A9NNA3
Definition tr|A9NNA3|A9NNA3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 86
Score (bit) 115.0
E-value 3.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945532|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J24, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNA3|A9NNA3_PICSI Putative uncharacterized protein OS=Picea...   115   3e-24
tr|Q5TKF1|Q5TKF1_ORYSJ cDNA clone:002-140-D08, full insert seque...   111   4e-23
tr|B8AXI0|B8AXI0_ORYSI Putative uncharacterized protein OS=Oryza...   111   4e-23
tr|A7P574|A7P574_VITVI Chromosome chr4 scaffold_6, whole genome ...   107   6e-22
tr|A9RBZ3|A9RBZ3_PHYPA Predicted protein (Fragment) OS=Physcomit...   104   5e-21
tr|Q10P22|Q10P22_ORYSJ Os03g0249900 protein OS=Oryza sativa subs...   103   6e-21
tr|A7NSV1|A7NSV1_VITVI Chromosome chr18 scaffold_1, whole genome...   103   6e-21
tr|A2XEK8|A2XEK8_ORYSI Putative uncharacterized protein OS=Oryza...   103   6e-21
tr|A9SRC3|A9SRC3_PHYPA Predicted protein OS=Physcomitrella paten...   103   8e-21
tr|B6T7I9|B6T7I9_MAIZE Putative uncharacterized protein OS=Zea m...   103   1e-20
tr|B6TJW9|B6TJW9_MAIZE Putative uncharacterized protein OS=Zea m...   100   1e-19
tr|B7FL43|B7FL43_MEDTR Putative uncharacterized protein OS=Medic...    99   2e-19
tr|Q9LYD2|Q9LYD2_ARATH Putative uncharacterized protein F15N18_1...    97   6e-19
tr|Q0DFE0|Q0DFE0_ORYSJ Os05g0596200 protein (Fragment) OS=Oryza ...    97   8e-19
tr|A3BZ42|A3BZ42_ORYSJ Putative uncharacterized protein OS=Oryza...    96   2e-18
tr|Q9LNS7|Q9LNS7_ARATH T20H2.23 protein OS=Arabidopsis thaliana ...    95   3e-18
tr|A9P7U6|A9P7U6_POPTR Putative uncharacterized protein OS=Popul...    92   2e-17
tr|A9RY89|A9RY89_PHYPA Predicted protein OS=Physcomitrella paten...    82   3e-14
tr|A9SMT4|A9SMT4_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|B7E7K4|B7E7K4_ORYSJ cDNA clone:001-104-D04, full insert seque...    77   8e-13
tr|A4RTB1|A4RTB1_OSTLU Predicted protein OS=Ostreococcus lucimar...    74   5e-12
tr|Q0WSI8|Q0WSI8_ARATH Putative uncharacterized protein At5g1160...    68   4e-10
tr|Q22GC2|Q22GC2_TETTH Putative uncharacterized protein OS=Tetra...    59   3e-07
tr|A8IZE2|A8IZE2_CHLRE Predicted protein OS=Chlamydomonas reinha...    56   2e-06
tr|A0CWV6|A0CWV6_PARTE Chromosome undetermined scaffold_3, whole...    50   8e-05
tr|A0DQ61|A0DQ61_PARTE Chromosome undetermined scaffold_6, whole...    48   4e-04
tr|B8LC58|B8LC58_THAPS Predicted protein OS=Thalassiosira pseudo...    47   7e-04
tr|B6KGV6|B6KGV6_TOXGO Putative uncharacterized protein OS=Toxop...    47   0.001
tr|B7G3U0|B7G3U0_PHATR Predicted protein OS=Phaeodactylum tricor...    44   0.006
tr|Q5CTV7|Q5CTV7_CRYPV Putative uncharacterized protein OS=Crypt...    44   0.006

>tr|A9NNA3|A9NNA3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 226

 Score =  115 bits (287), Expect = 3e-24
 Identities = 54/86 (62%), Positives = 64/86 (74%)
 Frame = +2

Query: 50  KKKKSSTDEPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGL 229
           KK  S +   EK  KKVYS  GQKHDPP+ERDPLR+FY+SLY Q   SEMA IWMMEHGL
Sbjct: 97  KKNSSPSKAKEKTVKKVYSLTGQKHDPPEERDPLRIFYQSLYEQIPTSEMATIWMMEHGL 156

Query: 230 LEHDVAKKAFERKKKNQASQKLGSPI 307
           L  + AKKA+ERK++ Q  QK G+P+
Sbjct: 157 LPPEKAKKAYERKQRKQQQQKTGTPV 182


>tr|Q5TKF1|Q5TKF1_ORYSJ cDNA clone:002-140-D08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0030I14.15 PE=2
           SV=1
          Length = 164

 Score =  111 bits (277), Expect = 4e-23
 Identities = 53/90 (58%), Positives = 66/90 (73%)
 Frame = +2

Query: 38  GHPPKKKKSSTDEPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMM 217
           G  PK+  S+T    K EKKVYS PGQK DPP+ER+PLR+FYESL  Q  +SEMAE W+M
Sbjct: 28  GAKPKRSASATGSRGKTEKKVYSLPGQKFDPPEEREPLRIFYESLSKQIPSSEMAEFWLM 87

Query: 218 EHGLLEHDVAKKAFERKKKNQASQKLGSPI 307
           EHGLL  + AKKA+E+K+K Q   + G+PI
Sbjct: 88  EHGLLSPERAKKAYEKKQKRQQQIRSGTPI 117


>tr|B8AXI0|B8AXI0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21244 PE=4 SV=1
          Length = 164

 Score =  111 bits (277), Expect = 4e-23
 Identities = 53/90 (58%), Positives = 66/90 (73%)
 Frame = +2

Query: 38  GHPPKKKKSSTDEPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMM 217
           G  PK+  S+T    K EKKVYS PGQK DPP+ER+PLR+FYESL  Q  +SEMAE W+M
Sbjct: 28  GAKPKRSASATGSRGKTEKKVYSLPGQKFDPPEEREPLRIFYESLSKQIPSSEMAEFWLM 87

Query: 218 EHGLLEHDVAKKAFERKKKNQASQKLGSPI 307
           EHGLL  + AKKA+E+K+K Q   + G+PI
Sbjct: 88  EHGLLSPERAKKAYEKKQKRQQQIRSGTPI 117


>tr|A7P574|A7P574_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032425001
           PE=4 SV=1
          Length = 194

 Score =  107 bits (267), Expect = 6e-22
 Identities = 48/86 (55%), Positives = 65/86 (75%)
 Frame = +2

Query: 50  KKKKSSTDEPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGL 229
           K    +T   + +EKKVY+ PGQKHDPP+ER+PLR+FYESL  Q  +SEMAE WMMEHGL
Sbjct: 60  KTTTKTTTTVKVREKKVYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGL 119

Query: 230 LEHDVAKKAFERKKKNQASQKLGSPI 307
           L  + AKKA+E+K++ Q   ++G+P+
Sbjct: 120 LSPEKAKKAYEKKQRRQKQIRMGTPV 145


>tr|A9RBZ3|A9RBZ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_26121 PE=4 SV=1
          Length = 135

 Score =  104 bits (259), Expect = 5e-21
 Identities = 49/74 (66%), Positives = 57/74 (77%)
 Frame = +2

Query: 80  EKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGLLEHDVAKKAF 259
           +KKEKKVY  PGQKHDPP+ERD LR+FY +L  Q   SEMAEIW+MEHGLL H  A+KAF
Sbjct: 2   QKKEKKVYDLPGQKHDPPEERDALRIFYSTLREQIPESEMAEIWLMEHGLLSHAEAQKAF 61

Query: 260 ERKKKNQASQKLGS 301
           ERK+K   S K G+
Sbjct: 62  ERKQKRGQSSKHGT 75


>tr|Q10P22|Q10P22_ORYSJ Os03g0249900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0249900 PE=2 SV=1
          Length = 318

 Score =  103 bits (258), Expect = 6e-21
 Identities = 52/78 (66%), Positives = 58/78 (74%)
 Frame = +2

Query: 74  EPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGLLEHDVAKK 253
           E  KKEKKVY  PGQKHDPP ERDPLR+FYESLY Q   SEMA IW+ME GLL  DVA+K
Sbjct: 178 EKVKKEKKVYDLPGQKHDPPQERDPLRIFYESLYEQVPTSEMAAIWLMEWGLLPVDVAQK 237

Query: 254 AFERKKKNQASQKLGSPI 307
            FE+K+     QKL SP+
Sbjct: 238 VFEKKQ----GQKLKSPV 251


>tr|A7NSV1|A7NSV1_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014417001
           PE=4 SV=1
          Length = 223

 Score =  103 bits (258), Expect = 6e-21
 Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 11/97 (11%)
 Frame = +2

Query: 50  KKKKSSTDEPEK-----------KEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASE 196
           KKKK   DE +K           +EKKVY  PGQK D P+ERDPLR+FYE+L+ Q   SE
Sbjct: 68  KKKKKKDDEKKKAAAKAEQNGKKREKKVYDLPGQKRDTPEERDPLRIFYETLFEQVPGSE 127

Query: 197 MAEIWMMEHGLLEHDVAKKAFERKKKNQASQKLGSPI 307
           MA  WMME GLL  DVAKK +E+K K    QK+ SP+
Sbjct: 128 MAAFWMMESGLLPKDVAKKVYEKKLKKNQQQKVASPV 164


>tr|A2XEK8|A2XEK8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10766 PE=4 SV=1
          Length = 317

 Score =  103 bits (258), Expect = 6e-21
 Identities = 52/78 (66%), Positives = 58/78 (74%)
 Frame = +2

Query: 74  EPEKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGLLEHDVAKK 253
           E  KKEKKVY  PGQKHDPP ERDPLR+FYESLY Q   SEMA IW+ME GLL  DVA+K
Sbjct: 177 EKVKKEKKVYDLPGQKHDPPQERDPLRIFYESLYEQVPTSEMAAIWLMEWGLLPVDVAQK 236

Query: 254 AFERKKKNQASQKLGSPI 307
            FE+K+     QKL SP+
Sbjct: 237 VFEKKQ----GQKLKSPV 250


>tr|A9SRC3|A9SRC3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82929 PE=4 SV=1
          Length = 369

 Score =  103 bits (257), Expect = 8e-21
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = +2

Query: 80  EKKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGLLEHDVAKKAF 259
           ++KEKKVY  PGQKH+PP+ERD LR+FY +L  Q   SEMAEIW+MEHGLL HD A+KAF
Sbjct: 232 QRKEKKVYDLPGQKHEPPEERDALRVFYSTLREQIPESEMAEIWLMEHGLLLHDEAQKAF 291

Query: 260 ERKKKNQASQKLGS 301
           ERK+K   S K G+
Sbjct: 292 ERKQKKGQSSKHGT 305


>tr|B6T7I9|B6T7I9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 178

 Score =  103 bits (256), Expect = 1e-20
 Identities = 46/75 (61%), Positives = 60/75 (80%)
 Frame = +2

Query: 83  KKEKKVYSFPGQKHDPPDERDPLRMFYESLYSQNSASEMAEIWMMEHGLLEHDVAKKAFE 262
           K +KKVYS PGQK DPP+ER+PLR+FYESL  Q  +SEMAE W+MEHG+L  + A+KA+E
Sbjct: 57  KADKKVYSLPGQKFDPPEEREPLRIFYESLSKQIPSSEMAEFWLMEHGMLSPERARKAYE 116

Query: 263 RKKKNQASQKLGSPI 307
           RK+K Q   ++G+PI
Sbjct: 117 RKQKRQQQVRMGTPI 131