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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945540
Clone id YMU02A01NGRL0009_K10
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_K10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGAAGTACTGGAAGAGATTGCCTGCTTACCTACTAAATATCTGAAGTGGATCACCGGAAC
TCCCAAAGACATGAAGGGATGAAATATTGAAACGACAAGAAAGGAAGATAAACAATTGTG
ATGAATTGATGAATATGATACATTGAAAGAAAAGTGAAAAAAAAAAAAAAAACAATGTCG
GCCGCCCCTGCCCTCCGCATCGTTCCTAGACAATTTTTTTGGACCATTGGTTTGGCGCGC
GGGTCAACTAGGTAATTGAACTTGCCCATAACAGTTTGCTAAGAAATCCTGGTCGTGTTC
ACTGCTTGAATTCACACCAGTAAGAAACCCCCGGTGCCAACCAAACGTTCAGAAAATTTC
CAGATGGTTTTCGGATGTCTTTACTGGA
■■Homology search results ■■ -
sp_hit_id O81210
Definition sp|O81210|RBOHC_ARATH Respiratory burst oxidase homolog protein C OS=Arabidopsis thaliana
Align length 48
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945540|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K10, 5'
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81210|RBOHC_ARATH Respiratory burst oxidase homolog protein ...    30   3.8  
sp|P47793|WNT4A_DANRE Protein Wnt-4a OS=Danio rerio GN=wnt4a PE=...    29   6.4  

>sp|O81210|RBOHC_ARATH Respiratory burst oxidase homolog protein C
           OS=Arabidopsis thaliana GN=RBOHC PE=2 SV=2
          Length = 905

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 374 PKTIWKFSERLVGTGGFLLV*IQAVNTTRIS*QTVMGKFNYLVDPRAK 231
           PK+ W F   + G  G ++V + A+  T  +     GK NYL  P  K
Sbjct: 480 PKSYWHFVNSVEGITGLVMVLLMAIAFTLATPWFRRGKLNYLPGPLKK 527


>sp|P47793|WNT4A_DANRE Protein Wnt-4a OS=Danio rerio GN=wnt4a PE=2
           SV=1
          Length = 352

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 230 VWRAGQLGN*TCP*QFAKKSWSCSLLEFTPV 322
           V R  QL    C  QF  + W+CS LE  PV
Sbjct: 67  VRRGAQLAIDECQYQFRNRRWNCSTLESVPV 97
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945540|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K10, 5'
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******