NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945550
Clone id YMU02A01NGRL0009_K23
Library
Length 412
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_K23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGGATGTTGCTGGTAGGACTGTGGCAGAGCTCAAACTGGCATCAGGTACCTCAGTACGC
CTACTATTGGCAGAGGCACGGATCACATCTTACAGCTGCCGCCTTTGGCATGGTAGCTGC
GAAGAAATGTTGTATACTGATGTGTCAGAAAGCTCCGTCAACGGCATTGATAGAAGTGTA
CATGGGGCTACTCCTCAGCAGTTTTTTGTAACTGGTGGCATGGCTCCCTCTTTAGCTCAC
TCTCTTGATCCTCACATTAGCCTTTGCAATAACAATTGGTCAGTACAGTCGGTGGCAGTC
GATCCAAAGGAGCACGTTCAGGTGTACATTGTGTATGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAAAAAATAAAAAAAAAAATCAAACAACCATTCTTGT
■■Homology search results ■■ -
sp_hit_id A4YRR9
Definition sp|A4YRR9|PURL_BRASO Phosphoribosylformylglycinamidine synthase 2 OS=Bradyrhizobium sp. (strain ORS278)
Align length 74
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945550|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K23, 5'
         (375 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4YRR9|PURL_BRASO Phosphoribosylformylglycinamidine synthase ...    31   2.2  
sp|A5EMI1|PURL_BRASB Phosphoribosylformylglycinamidine synthase ...    30   3.7  
sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing ...    30   3.7  
sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing ...    30   4.9  
sp|Q4QQU6|SPF30_RAT Survival of motor neuron-related-splicing fa...    30   4.9  
sp|Q5R591|SPF30_PONAB Survival of motor neuron-related-splicing ...    30   4.9  
sp|Q8BGT7|SPF30_MOUSE Survival of motor neuron-related-splicing ...    30   4.9  
sp|O75940|SPF30_HUMAN Survival of motor neuron-related-splicing ...    30   4.9  
sp|Q3T045|SPF30_BOVIN Survival of motor neuron-related-splicing ...    30   4.9  
sp|P76128|DDPA_ECOLI Probable D,D-dipeptide-binding periplasmic ...    29   8.3  
sp|P47190|PMT3_YEAST Dolichyl-phosphate-mannose--protein mannosy...    29   8.3  

>sp|A4YRR9|PURL_BRASO Phosphoribosylformylglycinamidine synthase 2
           OS=Bradyrhizobium sp. (strain ORS278) GN=purL PE=3 SV=1
          Length = 736

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 22  VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATP-- 195
           +AE+ +ASG   RLL A A I  ++   W G  +      V E+    +   + GA    
Sbjct: 638 LAEMAMASGIGARLLAAPASIVPHA--YWFGEDQARYLVTVPETEAGRVLAKMRGANVPC 695

Query: 196 QQFFVTGGMAPSLA 237
            +   TGG A ++A
Sbjct: 696 TRIGTTGGTALAIA 709


>sp|A5EMI1|PURL_BRASB Phosphoribosylformylglycinamidine synthase 2
           OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
           GN=purL PE=3 SV=1
          Length = 735

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 22  VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGA--TP 195
           +AE+ +ASG   RLL A A I  ++   W G  +      V E+    +   + GA    
Sbjct: 638 LAEMAMASGIGARLLAAPASIVPHA--YWFGEDQARYLVTVPETEAGRVLAKMRGAGVPC 695

Query: 196 QQFFVTGGMAPSLA 237
            +   TGG A ++A
Sbjct: 696 TRIGTTGGSALAIA 709


>sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing
           factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1
          Length = 237

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+ +DTS YN+   +P
Sbjct: 209 GVGTCGIADKPMTQYNDTSKYNVRHLMP 236


>sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing
           factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|Q4QQU6|SPF30_RAT Survival of motor neuron-related-splicing
           factor 30 OS=Rattus norvegicus GN=Smndc1 PE=2 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|Q5R591|SPF30_PONAB Survival of motor neuron-related-splicing
           factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|Q8BGT7|SPF30_MOUSE Survival of motor neuron-related-splicing
           factor 30 OS=Mus musculus GN=Smndc1 PE=2 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|O75940|SPF30_HUMAN Survival of motor neuron-related-splicing
           factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|Q3T045|SPF30_BOVIN Survival of motor neuron-related-splicing
           factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 194 GVAPCTLLSMPLTELSDTSVYNISSQLP 111
           GV  C +   P+T+  DTS YN+   +P
Sbjct: 210 GVGTCGIADKPMTQYQDTSKYNVRHLMP 237


>sp|P76128|DDPA_ECOLI Probable D,D-dipeptide-binding periplasmic
           protein ddpA OS=Escherichia coli (strain K12) GN=ddpA
           PE=2 SV=1
          Length = 516

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 181 HGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSV 285
           H A P+   V G  A     +LDP +++ NN+W+V
Sbjct: 24  HAAVPKDMLVIGKAADP--QTLDPAVTIDNNDWTV 56
tr_hit_id Q9C503
Definition tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12 (Putative uncharacterized protein T18I3.2) OS=Arabidopsis thaliana
Align length 107
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945550|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_K23, 5'
         (375 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12...    54   5e-06
tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1 (Puta...    54   5e-06
tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein OS=Arabi...    53   7e-06
tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome...    49   9e-05
tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis...    49   9e-05
tr|A9SKF3|A9SKF3_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q8W307|Q8W307_ORYSA Putative antifreeze glycoprotein OS=Oryza...    40   0.075
tr|Q10CW2|Q10CW2_ORYSJ Os03g0748300 protein OS=Oryza sativa subs...    40   0.075
tr|A2XM00|A2XM00_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.075
tr|B8ANU6|B8ANU6_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|Q10RI6|Q10RI6_ORYSJ Os03g0158300 protein OS=Oryza sativa subs...    35   1.4  
tr|A7SEF8|A7SEF8_NEMVE Predicted protein OS=Nematostella vectens...    35   1.8  
tr|Q8H8C2|Q8H8C2_ORYSJ Putative uncharacterized protein OJ1134F0...    34   3.1  
tr|A3AEA6|A3AEA6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.1  
tr|B4FWG2|B4FWG2_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.0  
tr|Q47KT6|Q47KT6_THEFY Peptidase S13, D-Ala-D-Ala carboxypeptida...    33   9.2  
tr|Q4ABK0|Q4ABK0_DROME CG33651 OS=Drosophila melanogaster GN=CG3...    33   9.2  

>tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12
           (Putative uncharacterized protein T18I3.2)
           OS=Arabidopsis thaliana GN=T18I3.2 PE=4 SV=1
          Length = 354

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +1

Query: 4   DVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVH 183
           D+    +A LKL +G+S  ++L    ITSY  R+WHG   E+L+T V +           
Sbjct: 78  DIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEE--------- 128

Query: 184 GATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQV 324
               ++  + GG++ +   S    IS    +W +Q ++ D K+ VQ+
Sbjct: 129 ----EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDSKDCVQM 167


>tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1
           (Putative uncharacterized protein At1g55370)
           OS=Arabidopsis thaliana GN=At1g55370 PE=2 SV=1
          Length = 308

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%)
 Frame = +1

Query: 4   DVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVH 183
           D+    +A LKL +G+S  ++L    ITSY  R+WHG   E+L+T V +           
Sbjct: 78  DIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEE--------- 128

Query: 184 GATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQV 324
               ++  + GG++ +   S    IS    +W +Q ++ D K+ VQ+
Sbjct: 129 ----EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDSKDCVQM 167


>tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 354

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 31/107 (28%), Positives = 52/107 (48%)
 Frame = +1

Query: 4   DVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVH 183
           D+    +A LKL  G+S  ++L    ITSY  R+WHG   E+L+T V +           
Sbjct: 78  DIGETCIARLKLDDGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEE--------- 128

Query: 184 GATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQV 324
               ++  + GG++ +   S    IS    +W +Q ++ D K+ VQ+
Sbjct: 129 ----EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDSKDCVQM 167


>tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025482001
           PE=4 SV=1
          Length = 349

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 30/104 (28%), Positives = 51/104 (49%)
 Frame = +1

Query: 22  VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQ 201
           V ++ L +G+   L+L    ITSY   +WHG   E+L+T V+E     +           
Sbjct: 76  VVKMGLENGSLASLMLPSGLITSYKAPMWHGGTLEVLHTTVTEEDSGAV----------- 124

Query: 202 FFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQVYIV 333
             + GG++ +L    D  IS   ++W +Q V  + +E +QV +V
Sbjct: 125 --IQGGVSLALECESDGGISWSPSSWILQDVRGNAEELIQVEMV 166


>tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016184 PE=4 SV=1
          Length = 754

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 30/104 (28%), Positives = 51/104 (49%)
 Frame = +1

Query: 22  VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQ 201
           V ++ L +G+   L+L    ITSY   +WHG   E+L+T V+E     +           
Sbjct: 446 VVKMGLENGSLASLMLPSGLITSYKAPMWHGGTLEVLHTTVTEEDSGAV----------- 494

Query: 202 FFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQVYIV 333
             + GG++ +L    D  IS   ++W +Q V  + +E +QV +V
Sbjct: 495 --IQGGVSLALECESDGGISWSPSSWILQDVRGNAEELIQVEMV 536


>tr|A9SKF3|A9SKF3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165403 PE=4 SV=1
          Length = 309

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = +1

Query: 31  LKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFV 210
           +KL  G+S R++L  A + S+  R+WHG  EE+L T V    V G D S      Q+   
Sbjct: 1   MKLKEGSSARVVLQSAFVASFKSRMWHGGVEELLRTLV----VPGEDDS------QRPTP 50

Query: 211 TGGMAPSLAHS---LDPHISLCNNNWSVQSVAVDPKEHVQV 324
            GG+A  +  S      ++      W +++   DP E VQ+
Sbjct: 51  AGGVALRVWESGAGSQSNLLASTKCWEIENARSDPGEFVQI 91


>tr|Q8W307|Q8W307_ORYSA Putative antifreeze glycoprotein OS=Oryza
           sativa GN=OSJNBa0069E14.14 PE=4 SV=1
          Length = 411

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +1

Query: 7   VAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSE 150
           V G    +++L +G++  +LL    +TSY   +WHG+  E+++T V+E
Sbjct: 95  VGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVIHTTVAE 142


>tr|Q10CW2|Q10CW2_ORYSJ Os03g0748300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0748300 PE=2 SV=1
          Length = 411

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +1

Query: 7   VAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSE 150
           V G    +++L +G++  +LL    +TSY   +WHG+  E+++T V+E
Sbjct: 95  VGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVIHTTVAE 142


>tr|A2XM00|A2XM00_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13506 PE=4 SV=1
          Length = 411

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +1

Query: 7   VAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSE 150
           V G    +++L +G++  +LL    +TSY   +WHG+  E+++T V+E
Sbjct: 95  VGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVIHTTVAE 142


>tr|B8ANU6|B8ANU6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10093 PE=4 SV=1
          Length = 342

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +1

Query: 13  GRTVAELKLASGTSVRLLLAEARITSYSCRLW--HGSCEEMLYTDVSESSVNGIDRSVHG 186
           G   AEL + +G+S++L LA+  +TSY  +++     C E+L+T V+ +   G  R   G
Sbjct: 53  GAPTAELSVRNGSSLQLRLADGLVTSYRPKVYWKDDGCREVLHT-VAGAGAGGEVRGGVG 111

Query: 187 ATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQV 324
               +   + G A SL         L  + WSV     D  + VQV
Sbjct: 112 LALSE-VSSSGAAESL---------LVGSEWSVVDADSDSYDAVQV 147