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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945568
Clone id YMU02A01NGRL0009_L21
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATGATGAAGGTGATGGTCGAATAAGAGATAAGTGCACAAGCATGAAGCAGGAGGAGACGG
ACGCGATGCAGGCATTGGATGTAGTGAAGATGAGCGCGCCAGGGCCCAACACGATGAGAA
CCATCTGGTTTGCAGGCAGAAACATAGAGGGGTGAGCTCTCTCTTTAAGCTCAAAGGGCT
TCCTTTGGAGTGCAAGACTTGCACATACATCCATGTTTCAGGTTTTTTAACTATACAAAC
TTCCACTACCCCCACAAAGAAGTGCAGCTTTTGGGTGACTTGCCTCTTGCGATTTGAGAA
ACTTGTTCATCTTGCTTCAAACGCTCATGTGAAACATCCAAATATGTCTTATCATGTACA
TAACATGGAATCGCCAACCTTGTAGTTCTCATTTGCCAGCAATGTATTGATGGGGATGTG
AAGACCAGATTCCTTGTATGTGCATGGTTGTGACATTGCTTTCACACTTGAAGTGGGTAC
TTACAGACGTATGTACAAGCTTGTTTCTTGGAACGTGATAGAACTTTGTTTTTGAAAAAA
AAAG
■■Homology search results ■■ -
sp_hit_id P0C6T5
Definition sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5
Align length 102
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945568|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_L21, 5'
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus ...    33   1.2  
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronaviru...    33   1.2  
sp|Q61271|ACV1B_MOUSE Activin receptor type-1B OS=Mus musculus G...    32   1.5  
sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-alpha ...    31   3.4  
sp|Q8IZU8|DSEL_HUMAN Dermatan-sulfate epimerase-like protein OS=...    31   3.4  
sp|P80202|ACV1B_RAT Activin receptor type-1B OS=Rattus norvegicu...    30   5.8  
sp|P64782|Y995_MYCBO Uncharacterized protein Mb0995 OS=Mycobacte...    30   5.8  
sp|P64781|Y970_MYCTU Uncharacterized protein Rv0970/MT0998 OS=My...    30   5.8  
sp|Q96LB8|PGRP4_HUMAN Peptidoglycan recognition protein I-beta O...    30   7.6  
sp|A2WM14|PCF5_ORYSI Transcription factor PCF5 OS=Oryza sativa s...    30   7.6  
sp|Q9W7K5|LDHA_CYPCA L-lactate dehydrogenase A chain OS=Cyprinus...    30   7.6  
sp|Q9H7R0|ZN442_HUMAN Zinc finger protein 442 OS=Homo sapiens GN...    30   9.9  
sp|P79953|OVCH2_XENLA Ovochymase-2 OS=Xenopus laevis GN=ovch2 PE...    30   9.9  
sp|P36896|ACV1B_HUMAN Activin receptor type-1B OS=Homo sapiens G...    30   9.9  
sp|P69084|LDHA_GILSE L-lactate dehydrogenase A chain OS=Gillicht...    30   9.9  
sp|P69083|LDHA_GILMI L-lactate dehydrogenase A chain OS=Gillicht...    30   9.9  
sp|O93401|LDHA_CORNI L-lactate dehydrogenase A chain OS=Coryphop...    30   9.9  

>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5
            GN=1a PE=3 SV=1
          Length = 4481

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
 Frame = -3

Query: 473  LQV*KQCHNHAHTRNLVFT---SPSIHCWQMRTTRLAIPCYVHDKTYLDVSHERLKQDEQ 303
            +Q+ K+C+   +   LV +   S  I C + R +   +   VH KTY+ V+ E++  D  
Sbjct: 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYND-- 1346

Query: 302  VSQIARGKSPKSCTSLWG*WKFV*LKNLKHGCMCKSCTPKEA 177
               +A  K P   T     W+ +       G  C  CT + A
Sbjct: 1347 ---LAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSA 1385


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
            HKU5 GN=rep PE=3 SV=1
          Length = 7182

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
 Frame = -3

Query: 473  LQV*KQCHNHAHTRNLVFT---SPSIHCWQMRTTRLAIPCYVHDKTYLDVSHERLKQDEQ 303
            +Q+ K+C+   +   LV +   S  I C + R +   +   VH KTY+ V+ E++  D  
Sbjct: 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYND-- 1346

Query: 302  VSQIARGKSPKSCTSLWG*WKFV*LKNLKHGCMCKSCTPKEA 177
               +A  K P   T     W+ +       G  C  CT + A
Sbjct: 1347 ---LAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSA 1385


>sp|Q61271|ACV1B_MOUSE Activin receptor type-1B OS=Mus musculus
           GN=Acvr1b PE=1 SV=1
          Length = 505

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -1

Query: 214 MDVCASLALQRKPFELKERAHPSMFLPANQMVLIVLGPGALIF 86
           +D C  + L+     LKE AHPSM+ P  ++V I+ GP  L+F
Sbjct: 98  IDFCNKIDLRVPSGHLKEPAHPSMWGPV-ELVGIIAGPVFLLF 139


>sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-alpha
           OS=Homo sapiens GN=PGLYRP3 PE=1 SV=1
          Length = 341

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 389 SFASNVLMGM*RPDSLYVHG-CDIAFTLEVGTYRRMYKLVSWNV 517
           S  S +L G+ +  S+Y  G CD+A+   VG   R+Y+ V WN+
Sbjct: 61  SVCSQMLRGL-QSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNI 103


>sp|Q8IZU8|DSEL_HUMAN Dermatan-sulfate epimerase-like protein OS=Homo
            sapiens GN=DSEL PE=2 SV=2
          Length = 1212

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -2

Query: 276  TQKLHFFVGVV-----EVCIVKKPETWMYVQVLHSKGSPLSLK 163
            T KLHFF  V+      + IV+ P  W+Y  + +SK S  SLK
Sbjct: 1010 TLKLHFFQEVLGASMRALYIVRDPRAWIYSMLYNSKPSLYSLK 1052


>sp|P80202|ACV1B_RAT Activin receptor type-1B OS=Rattus norvegicus
           GN=Acvr1b PE=2 SV=1
          Length = 505

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 214 MDVCASLALQRKPFELKERAHPSMFLPANQMVLIVLGPGALIF 86
           +D C  + L+     LKE  HPSM+ P  ++V I+ GP  L+F
Sbjct: 98  IDFCNKIDLRVPSGHLKEPEHPSMWGPV-ELVGIIAGPVFLLF 139


>sp|P64782|Y995_MYCBO Uncharacterized protein Mb0995
           OS=Mycobacterium bovis GN=Mb0995 PE=4 SV=1
          Length = 210

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 33  CTSMKQEETDAMQALDVVKMSAPGPNTMRTIWFAGRNIEG*ALSLSSKGFLWSAR 197
           CT    E   +M A+D+  M+ P PN+   IWF+  N  G  +  +     W+ R
Sbjct: 120 CTEYATEPDGSMPAMDMTAMNMP-PNSGSPIWFSAVNWIG-TVGFAVAAVFWACR 172


>sp|P64781|Y970_MYCTU Uncharacterized protein Rv0970/MT0998
           OS=Mycobacterium tuberculosis GN=Rv0970 PE=4 SV=1
          Length = 210

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 33  CTSMKQEETDAMQALDVVKMSAPGPNTMRTIWFAGRNIEG*ALSLSSKGFLWSAR 197
           CT    E   +M A+D+  M+ P PN+   IWF+  N  G  +  +     W+ R
Sbjct: 120 CTEYATEPDGSMPAMDMTAMNMP-PNSGSPIWFSAVNWIG-TVGFAVAAVFWACR 172


>sp|Q96LB8|PGRP4_HUMAN Peptidoglycan recognition protein I-beta
           OS=Homo sapiens GN=PGLYRP4 PE=1 SV=2
          Length = 373

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 446 GCDIAFTLEVGTYRRMYKLVSWNV 517
           GCD+A+   VG   R+Y+ V WN+
Sbjct: 112 GCDVAYNFLVGDDGRVYEGVGWNI 135


>sp|A2WM14|PCF5_ORYSI Transcription factor PCF5 OS=Oryza sativa
           subsp. indica GN=PCF5 PE=4 SV=1
          Length = 582

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 35  HKHEAGGDGRDAGIGCS-----EDERARAQHDENHLVCRQKHRGV 154
           H+   GGDG   G G S      DE+ + QHD + L+    H+GV
Sbjct: 46  HRVTHGGDGGGVGGGGSGGQEEADEQQQQQHDHHRLLQLHHHQGV 90
tr_hit_id A6QSI8
Definition tr|A6QSI8|A6QSI8_AJECN Putative uncharacterized protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 101
Score (bit) 36.2
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945568|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_L21, 5'
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6QSI8|A6QSI8_AJECN Putative uncharacterized protein OS=Ajell...    36   1.2  

>tr|A6QSI8|A6QSI8_AJECN Putative uncharacterized protein
            OS=Ajellomyces capsulata (strain NAm1 / WU24)
            GN=HCAG_00344 PE=4 SV=1
          Length = 1181

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
 Frame = +2

Query: 35   HKHEAGGDGRDAGIGCSEDERARAQHDENHLVCRQKHRGVSSLFKLKGLPLECKTCTYIH 214
            +K++ G D  D+    SE +R+ A  D      R  +RGV  + +L+    E K   +  
Sbjct: 1081 YKYDVGTDQYDS----SEKKRSPAWCD------RLLYRGVGRIKQLEYRRHEVKVSDHRP 1130

Query: 215  VSGFLTIQTST-TPTKKCSFWVTCLLRFEK-LVHLASNAHV 331
            VSG   ++  T +P K+ + WVTC   F K    LA++A V
Sbjct: 1131 VSGLFKMRIKTISPEKRTNVWVTCQEEFRKEKRRLATDARV 1171