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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945586
Clone id YMU02A01NGRL0009_M22
Library
Length 417
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_M22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGTATAAGCCTTTCGCGCTGGGCCTTCTCTACGCAGGCGCGGTCGATCAACTCTTGCTC
CGACAATGAGGGCTAAGTGGAAGAAGAAAAGAATGCGCAGGTTGAAGAGGAAACGCAGAA
AGATGAGGCAGAGATCCAAGTAGGACTTTTGAAGTTTCTATCGGCGCTGAGGGAGCATGT
GTGGTCTTCTATCTCAATGGAGAGTTTGAGCTGGATCTCTCTCTTGTGAATAGCGTAGCA
CTGACAAGGGATTGATTGCTTCTCTTATACCCTCCCTAGGACGAAGGCCTGCTCTCCTTC
TGGAATATGATTTTGAGTTGTCTTTCTTTTTGCCCTTTTGATGAACGCTCTAAGGCTAAC
ATGAAAACTGGATTATTGAGACGAAGCAACACTCACCAAAAAAAATTTAAAACATGT
■■Homology search results ■■ -
sp_hit_id O74689
Definition sp|O74689|NDE1_EMENI Nuclear distribution protein nudE OS=Emericella nidulans
Align length 87
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945586|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_M22, 5'
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74689|NDE1_EMENI Nuclear distribution protein nudE OS=Emeric...    32   0.75 
sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium ...    32   0.75 
sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus ...    32   0.97 
sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein...    31   1.7  
sp|Q5KEK0|PALA_CRYNE pH-response regulator protein palA/RIM20 OS...    29   6.3  
sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia burgd...    29   8.2  

>sp|O74689|NDE1_EMENI Nuclear distribution protein nudE
           OS=Emericella nidulans GN=nudE PE=1 SV=1
          Length = 586

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -1

Query: 350 ERSSKGQKERQLKIIFQKESRPSS*GGYKRS-NQSLVSATLFTRERSSSNSPLR*KTTHA 174
           ER     + R+   + +  S P +   + RS  +S VS+ LF+   +  +  L   T   
Sbjct: 189 ERLRNNNRRRRPAPLGRSPSTPHTPEIFDRSPGESTVSSPLFSTPPTKLSLTLASATATP 248

Query: 173 PSAPI-ETSKVLLGSLPHLSAFPLQPA 96
           PS P+ ETS  +  SL   S FPLQ A
Sbjct: 249 PSPPMSETSSSMRKSLTAASGFPLQKA 275


>sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium
            channel subunit alpha-1B OS=Discopyge ommata PE=2 SV=1
          Length = 2326

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
 Frame = -1

Query: 347  RSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNS---PLR*KTTH 177
            R S+GQ E    +  + ++RP + G  ++   + +S+  +   RSS  S    L  +T  
Sbjct: 2204 RLSRGQSEHNHLLSGESQNRPYAGGDSRQPMGTRISSDPYLGFRSSCGSEDLELLEETLT 2263

Query: 176  APSAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPHC---RSKS*STAPA*RR 24
               A   T+    G  P  S+F  QP  S  +P   HC   RS   STA + R+
Sbjct: 2264 FEVAVAATTAT--GRSPRTSSFTTQPPQSRRVPNGYHCNLGRSTGPSTAASKRK 2315


>sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
           GN=Fcho2 PE=1 SV=1
          Length = 809

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
 Frame = -1

Query: 380 LNNPVFMLALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNS 201
           + N     A+ R S  Q  R        +S+PSS    K +N  L    LF     SS++
Sbjct: 381 IGNITLSPAVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSSA 440

Query: 200 PLR*KTTHAPSAPIETSKVL----LGSLPHLSAFPLQPAHSFLLPLSPHCRSKS*STAPA 33
           PL   ++  P+ P+    ++      S P L++  L   +    P SP   S   +T+P 
Sbjct: 441 PLTSSSSARPTTPLSLGTLVPPPRPASRPKLASGKLSGINEIPRPFSPPVTS---NTSPP 497

Query: 32  *RRPSAK 12
              P A+
Sbjct: 498 PTAPLAR 504


>sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein
           kinase DDB_G0274821 OS=Dictyostelium discoideum
           GN=DDB_G0274821 PE=3 SV=1
          Length = 854

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 215 SSSNSPLR*KTTHAPSAPIETSKVLLGSLPHLSAFP 108
           SSS  P    ++ +PS+P  TS  LL S+P+ S FP
Sbjct: 626 SSSPPPSSSSSSSSPSSPSSTSPSLLSSIPNPSLFP 661


>sp|Q5KEK0|PALA_CRYNE pH-response regulator protein palA/RIM20
           OS=Cryptococcus neoformans GN=RIM20 PE=3 SV=1
          Length = 902

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 215 SSSNSPLR*KTTHAPSAPI--ETSKVLLGSLPHLSAFPLQPAHSFLLPLSP 69
           S S+SP+R   + APSAP   E+    L  LPH S+   QPA    LP  P
Sbjct: 785 SFSSSPVR---SPAPSAPARRESPPKTLSFLPHPSSSAWQPASVDFLPPPP 832


>sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia
           burgdorferi GN=dbpB PE=3 SV=1
          Length = 187

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 377 NNPVFMLALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQS 249
           NNP+       ++K Q E QLK++ +K++  +  GG K++N+S
Sbjct: 143 NNPINTAERLLAAKAQIENQLKVVKEKQNIEN--GGEKKNNKS 183
tr_hit_id Q6P5W2
Definition tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
Align length 35
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945586|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_M22, 5'
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens GN=LOC4...    43   0.007
tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapi...    37   0.50 
tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1 (Fragm...    35   2.5  
tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis G...    35   2.5  
tr|Q9CIW5|Q9CIW5_LACLA Putative uncharacterized protein ycdJ OS=...    34   3.2  
tr|A0DSY9|A0DSY9_PARTE Chromosome undetermined scaffold_62, whol...    34   4.2  
tr|B1GBH3|B1GBH3_9BURK Putative uncharacterized protein OS=Burkh...    33   7.2  
tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococ...    33   7.2  
tr|Q29071|Q29071_PIG Gastric mucin (Fragment) OS=Sus scrofa PE=2...    33   7.2  
tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.2  
tr|A4HU21|A4HU21_LEIIN Putative uncharacterized protein OS=Leish...    33   9.4  

>tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
           GN=LOC400590 PE=2 SV=1
          Length = 102

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 170 SAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPH 66
           ++ ++ +  LLG LPHLS+F LQPAHS L PL  H
Sbjct: 55  ASTVQQASGLLGPLPHLSSFALQPAHSLLPPLGSH 89


>tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapiens
           GN=LOC339290 PE=2 SV=1
          Length = 137

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = -1

Query: 143 LLGSLPHLSAFPLQPAHSFLLPLSPH 66
           LLG LPHLS+F  QPAHS L  L  H
Sbjct: 75  LLGPLPHLSSFAFQPAHSLLSLLGSH 100


>tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1
           (Fragment) OS=Xenopus tropicalis GN=TEgg047a21.1-001
           PE=2 SV=1
          Length = 996

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -1

Query: 374 NPVFMLALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNSPL 195
           NP++  A   SSK  KE +  +  +KE  P++      SN SL S+T+   + S S  P 
Sbjct: 344 NPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSLKSSTVSASQNSKSEEP- 396

Query: 194 R*KTTHAPS 168
           R KT   PS
Sbjct: 397 RSKTPPLPS 405


>tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis
           GN=rab11fip1 PE=2 SV=1
          Length = 601

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -1

Query: 374 NPVFMLALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNSPL 195
           NP++  A   SSK  KE +  +  +KE  P++      SN SL S+T+   + S S  P 
Sbjct: 344 NPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSLKSSTVSASQNSKSEEP- 396

Query: 194 R*KTTHAPS 168
           R KT   PS
Sbjct: 397 RSKTPPLPS 405


>tr|Q9CIW5|Q9CIW5_LACLA Putative uncharacterized protein ycdJ
           OS=Lactococcus lactis subsp. lactis GN=ycdJ PE=4 SV=1
          Length = 803

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -1

Query: 293 SRPSS*GGYKRSNQSLVSATLFTRERSSSNSPLR*KTTHAPSAPIETSKVLLGSLPHLSA 114
           S P+S      S +   S++  +   SSS++P    T+ APS P+++SK ++G    LSA
Sbjct: 93  SSPTSQASLAPSTEGSASSSGVSASMSSSSAPTSSSTSKAPSFPMDSSKAIVGVDSSLSA 152


>tr|A0DSY9|A0DSY9_PARTE Chromosome undetermined scaffold_62, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00019849001 PE=4 SV=1
          Length = 589

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/87 (31%), Positives = 46/87 (52%)
 Frame = -1

Query: 356 ALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNSPLR*KTTH 177
           A+E  SKGQKE++ K    K+ R SS G   +  Q+ V+ ++ T  +S  N+ ++  TT+
Sbjct: 445 AIEVGSKGQKEKEEK---DKQMRSSSKG--PQVMQNGVNGSIKTTNQSKQNTIIKRNTTN 499

Query: 176 APSAPIETSKVLLGSLPHLSAFPLQPA 96
            P+     +K       ++  +PLQ A
Sbjct: 500 LPALGTAQNK------SNIKRYPLQNA 520


>tr|B1GBH3|B1GBH3_9BURK Putative uncharacterized protein
           OS=Burkholderia graminis C4D1M GN=BgramDRAFT_6710 PE=4
           SV=1
          Length = 271

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 173 PSAPIETSKVLLGSLPHLSAFPLQPAHSFLLPLSPHCRSKS*STAPA 33
           P+ PIE   + + S+P     PL P     LP  PH  S+S +  PA
Sbjct: 194 PAEPIEPLPLPVDSVPPAEPLPLLPVPELRLPEPPHAPSESSAATPA 240


>tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_88023 PE=4 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -1

Query: 377 NNPVFMLALERSSKGQKERQLKIIFQKESRPSS*GGYKRSNQSLVSATLFTRERSSSNSP 198
           NNPV M  L+  S+ +KER+     +KE+R       KR  +S       +  RS S SP
Sbjct: 160 NNPVKMAQLKDESRAEKERRRA---KKEARRDKKRSSKRDKRSR-KCDSSSESRSRSRSP 215

Query: 197 LR*KTTHAPSAPIETSK 147
            R +  H   +P   S+
Sbjct: 216 KRERRRHRSRSPRHRSR 232


>tr|Q29071|Q29071_PIG Gastric mucin (Fragment) OS=Sus scrofa PE=2
           SV=1
          Length = 528

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = -1

Query: 260 SNQSLVSATLFTRERSSSNSPLR*KTTHAPSAPIETSKVLLGSLPHLSAFPLQPAHSFLL 81
           S+   +S+T+  +  SSS+SP    T+  PS+         GS P  SA  +QP+ S   
Sbjct: 297 SSSPPISSTISVQPSSSSSSPTTSTTSVQPSSS--------GSAPTTSATSVQPSSSSSP 348

Query: 80  PLS------PHCRSKS*STAPA*RRPSAKG 9
           P+S      P   S S +T+    +PS+ G
Sbjct: 349 PISSTISVQPSSSSSSPTTSTTSVQPSSSG 378


>tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=27937 PE=4 SV=1
          Length = 323

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 314 KIIFQKESRP-----SS*GGYKRSNQSLVSATLFTRERSSSNSPLR*KTTHAPSAPIETS 150
           +++F + SRP     SS    KR+  +   +   T++   S +P + + T APS P ETS
Sbjct: 254 RLVFNRTSRPTAAAASSTAASKRTKPTSAPSATVTKKAKPSPAPKKHEPTQAPSPPPETS 313

Query: 149 K 147
           +
Sbjct: 314 R 314