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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945598
Clone id YMU02A01NGRL0009_N12
Library
Length 364
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_N12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTGATTGTCTGTTGAAGACTTATGGCTTTTTGACTCCGGATCTGTGGCGAGAGACTAGA
TTTGTGAAGTCTCCTTTCCAGGAGTTCACTGACCACCTTGCAAAGCCAACAAGGTTAAGC
ATTTTGGATGAGGTTGACAAGCCTCCTGCCTATTGAGCTTGTCATTGTCTATTGGTGGGG
TGCCCTCAATTTTGGAGTTCCCTCTTTCGAGACTTGGGGTGAAAATTTTGGAGTTTTAAA
CAGCTTTAGAGCTGAATGACTTAGGTGATTTTGAGAAAATTCGATGAATGGACATTGCGT
CTTGTTGTTTTGATTCCAATTGAAGCTACATTTTGTCAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id Q90YS3
Definition sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus
Align length 41
Score (bit) 62.4
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945598|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_N12, 5'
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus puncta...    62   7e-10
sp|P27952|RS2_RAT 40S ribosomal protein S2 OS=Rattus norvegicus ...    61   2e-09
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 OS=Mus musculus GN=...    61   2e-09
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens GN=...    61   2e-09
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 OS=Bos taurus GN=RP...    61   2e-09
sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4 OS=Arabidopsis t...    60   3e-09
sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis t...    58   1e-08
sp|Q93VB8|RS22_ARATH 40S ribosomal protein S2-2 OS=Arabidopsis t...    57   3e-08
sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1 OS=Arabidopsis t...    57   3e-08
sp|P49154|RS2_URECA 40S ribosomal protein S2 OS=Urechis caupo GN...    54   2e-07
sp|P31009|RS2_DROME 40S ribosomal protein S2 OS=Drosophila melan...    45   1e-04
sp|P27685|RS2_DICDI 40S ribosomal protein S2 OS=Dictyostelium di...    42   7e-04
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 OS=Caenorhabditis e...    41   0.002
sp|O43992|RS2_LEIAM 40S ribosomal protein S2 OS=Leishmania amazo...    39   0.011
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 OS=Schizosaccharomy...    35   0.089
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 (Fragment) OS=Crice...    35   0.15 
sp|P25443|RS2_YEAST 40S ribosomal protein S2 OS=Saccharomyces ce...    32   0.99 
sp|Q2VYF4|LETM2_HUMAN LETM1 domain-containing protein LETM2, mit...    30   3.8  
sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g1002...    29   6.4  

>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus
           GN=rps2 PE=2 SV=1
          Length = 277

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKP-TRLSI 123
           D + KTY +LTPDLW+ET F KSP+QEFTDHLAK  TR+S+
Sbjct: 227 DAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAKTHTRVSV 267


>sp|P27952|RS2_RAT 40S ribosomal protein S2 OS=Rattus norvegicus
           GN=Rps2 PE=1 SV=1
          Length = 293

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKP-TRLSI 123
           D + KTY +LTPDLW+ET F KSP+QEFTDHL K  TR+S+
Sbjct: 242 DAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV 282


>sp|P25444|RS2_MOUSE 40S ribosomal protein S2 OS=Mus musculus
           GN=Rps2 PE=1 SV=3
          Length = 293

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKP-TRLSI 123
           D + KTY +LTPDLW+ET F KSP+QEFTDHL K  TR+S+
Sbjct: 242 DAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV 282


>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens
           GN=RPS2 PE=1 SV=2
          Length = 293

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKP-TRLSI 123
           D + KTY +LTPDLW+ET F KSP+QEFTDHL K  TR+S+
Sbjct: 242 DAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV 282


>sp|O18789|RS2_BOVIN 40S ribosomal protein S2 OS=Bos taurus GN=RPS2
           PE=2 SV=2
          Length = 293

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKP-TRLSI 123
           D + KTY +LTPDLW+ET F KSP+QEFTDHL K  TR+S+
Sbjct: 242 DAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV 282


>sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4 OS=Arabidopsis
           thaliana GN=RPS2D PE=2 SV=1
          Length = 276

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/44 (61%), Positives = 32/44 (72%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEV 135
           DCL KTYGFLTP+ W+ETRF KSP+QE TD L  P  + I + V
Sbjct: 227 DCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVV 270


>sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis
           thaliana GN=RPS2C PE=2 SV=2
          Length = 285

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLA 102
           DCL KTYGFLTP+ W+ETRF +SP+QE TD LA
Sbjct: 236 DCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268


>sp|Q93VB8|RS22_ARATH 40S ribosomal protein S2-2 OS=Arabidopsis
           thaliana GN=RPS2B PE=2 SV=1
          Length = 284

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLA 102
           DCL KTYGFLTP+ W+ETRF +SP+QE TD L+
Sbjct: 235 DCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLS 267


>sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1 OS=Arabidopsis
           thaliana GN=RPS2A PE=2 SV=2
          Length = 284

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLA 102
           DCL KTYGFLTP+ W+ETRF +SP+QE TD L+
Sbjct: 235 DCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLS 267


>sp|P49154|RS2_URECA 40S ribosomal protein S2 OS=Urechis caupo
           GN=RPS2 PE=2 SV=1
          Length = 278

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +1

Query: 19  TYGFLTPDLWRETRFVKSPFQEFTDHLAK 105
           TY +LTPDLWRET F KSP+QE+TD+LAK
Sbjct: 233 TYSYLTPDLWRETVFTKSPYQEYTDYLAK 261
tr_hit_id A9U0C2
Definition tr|A9U0C2|A9U0C2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 87.4
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945598|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_N12, 5'
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0C2|A9U0C2_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A9TNL6|A9TNL6_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A9TNL0|A9TNL0_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A9RHM6|A9RHM6_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A9U156|A9U156_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|Q9AVU0|Q9AVU0_PICAB 40S ribosomal protein S2 OS=Picea abies P...    81   3e-14
tr|A9NRU6|A9NRU6_PICSI Putative uncharacterized protein OS=Picea...    81   3e-14
tr|A9NMF2|A9NMF2_PICSI Putative uncharacterized protein OS=Picea...    81   3e-14
tr|A9NYW2|A9NYW2_PICSI Putative uncharacterized protein OS=Picea...    80   4e-14
tr|Q84M35|Q84M35_ORYSJ Os03g0807800 protein OS=Oryza sativa subs...    75   2e-12
tr|A9PDI4|A9PDI4_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A3ANV5|A3ANV5_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2XN63|A2XN63_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2XN57|A2XN57_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A7PWE1|A7PWE1_VITVI Chromosome chr8 scaffold_34, whole genome...    72   1e-11
tr|A5BIQ8|A5BIQ8_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|Q6ZIW7|Q6ZIW7_ORYSJ Putative 40S ribosomal protein S2 OS=Oryz...    71   2e-11
tr|Q0D7V1|Q0D7V1_ORYSJ Os07g0207400 protein (Fragment) OS=Oryza ...    71   2e-11
tr|B8B8I7|B8B8I7_ORYSI Putative uncharacterized protein OS=Oryza...    71   2e-11
tr|A3BHN6|A3BHN6_ORYSJ Putative uncharacterized protein OS=Oryza...    69   9e-11
tr|B6TNR8|B6TNR8_MAIZE 40S ribosomal protein S2 OS=Zea mays PE=2...    67   3e-10
tr|A2Q0R6|A2Q0R6_SOLSE Ribosomal protein S2 OS=Solea senegalensi...    65   2e-09
tr|B5DGA8|B5DGA8_SALSA 40S ribosomal protein S2 OS=Salmo salar G...    63   8e-09
tr|Q0H634|Q0H634_SORBI Putative ribosomal protein (Fragment) OS=...    63   8e-09
tr|Q6NWC3|Q6NWC3_DANRE Ribosomal protein S2 OS=Danio rerio GN=rp...    62   1e-08
tr|Q4RJH8|Q4RJH8_TETNG Chromosome 3 SCAF15037, whole genome shot...    62   1e-08
tr|Q6IPX5|Q6IPX5_HUMAN Ribosomal protein S2 OS=Homo sapiens GN=R...    62   1e-08
tr|Q3SB00|Q3SB00_9SAUR 40S ribosomal protein S2 (Fragment) OS=Ox...    62   1e-08
tr|Q8J014|Q8J014_HUMAN Ribosomal protein S2 OS=Homo sapiens GN=r...    62   2e-08
tr|Q3KQT6|Q3KQT6_HUMAN Ribosomal protein S2 OS=Homo sapiens GN=R...    62   2e-08

>tr|A9U0C2|A9U0C2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_227152 PE=3 SV=1
          Length = 280

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDKPPAY 153
           +CLLKTYGFLTPDLWRETRF KSPFQEFTD LAKP ++S++++V+K P Y
Sbjct: 231 ECLLKTYGFLTPDLWRETRFSKSPFQEFTDFLAKPHKISVVEDVEKTPVY 280


>tr|A9TNL6|A9TNL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95104 PE=4 SV=1
          Length = 188

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDKPPAY 153
           +CLLKTYGFLTPDLWRETRF KSPFQEFTD LAKP ++S++++V+K P Y
Sbjct: 139 ECLLKTYGFLTPDLWRETRFSKSPFQEFTDFLAKPHKISVVEDVEKTPVY 188


>tr|A9TNL0|A9TNL0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196764 PE=3 SV=1
          Length = 280

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDKPPAY 153
           +CLLKTYGFLTPDLWRETRF KSPFQEFTD LAKP ++S++++V+K P Y
Sbjct: 231 ECLLKTYGFLTPDLWRETRFSKSPFQEFTDFLAKPHKISVVEDVEKTPVY 280


>tr|A9RHM6|A9RHM6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114488 PE=3 SV=1
          Length = 280

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDKPPAY 153
           +CLLKTYGFLTPDLWRETRF KSPFQEFTD LAKP ++S++++V+K P Y
Sbjct: 231 ECLLKTYGFLTPDLWRETRFSKSPFQEFTDFLAKPHKISVVEDVEKTPVY 280


>tr|A9U156|A9U156_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173117 PE=3 SV=1
          Length = 280

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 37/50 (74%), Positives = 45/50 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDKPPAY 153
           +CLLKTYGFLTPDLWRETRF KSPFQEFTD LAKP ++S++++V+K P Y
Sbjct: 231 ECLLKTYGFLTPDLWRETRFSKSPFQEFTDFLAKPHKISVVEDVEKTPIY 280


>tr|Q9AVU0|Q9AVU0_PICAB 40S ribosomal protein S2 OS=Picea abies PE=2
           SV=1
          Length = 232

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDK 141
           +CLLKTYGFLTPDLWRETRF KSPFQE+TD LAKP +  IL++VDK
Sbjct: 183 ECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALILEDVDK 228


>tr|A9NRU6|A9NRU6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 232

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDK 141
           +CLLKTYGFLTPDLWRETRF KSPFQE+TD LAKP +  IL++VDK
Sbjct: 183 ECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALILEDVDK 228


>tr|A9NMF2|A9NMF2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 270

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDK 141
           +CLLKTYGFLTPDLWRETRF KSPFQE+TD LAKP +  IL++VDK
Sbjct: 221 ECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALILEDVDK 266


>tr|A9NYW2|A9NYW2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 280

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILDEVDK 141
           +CLLKTYGFLTPDLWRETRF KSPFQE+TD LAKP +  +L++VDK
Sbjct: 231 ECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALVLEDVDK 276


>tr|Q84M35|Q84M35_ORYSJ Os03g0807800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0059E14.8 PE=2 SV=1
          Length = 274

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 31/42 (73%), Positives = 38/42 (90%)
 Frame = +1

Query: 4   DCLLKTYGFLTPDLWRETRFVKSPFQEFTDHLAKPTRLSILD 129
           DCL+KTYGFLTPD WR+T+FVKSPFQE+TD LAKPT+  ++D
Sbjct: 225 DCLMKTYGFLTPDFWRDTKFVKSPFQEYTDLLAKPTKALMID 266