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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945610
Clone id YMU02A01NGRL0009_O05
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGCGAACCCTTGAGCGAATCTTCGCGTTGTCTGCTCTTGCTTGGCGCACTTTCCACTTTA
ACGGCGTACCTTTTGCATAATGGGTCAGCGAGTAAATGGGAACAGCGGCTTAAGCCATTA
GGTGTAGGCGTAATGAGGTTGAATCTTCGGCGTTGTTTCTATTTGACCCGAAACCGATTG
ATCTAGCCACGAGCAGGTTGAATCGAGCTCTCCACAGAGGCCTTATAGGACCGAACTCAC
GTATGTGGCATACTACGGGGATGACTTGTGGCTAGGGGTGAATCATATAGCTACAACTCC
AAAAAGTGCCATTGTTGAACTCCTTTGGACCAAAAAAACCTATGGGCAAGAAAATGAGTC
CTCCTTTGGTCTTTCGCCCCACAAGCATGCGAACGCTTTTTCAATAACTGGCTCACAACG
GTGAAACCAGCTGTTTCTAGAAGTATTGGCCACACCGTGTGAAGTCATGAAAGCTTCTCC
CCCTTTGTTGCTTGCGGTTGAGTGCCCTTTTTTGCC
■■Homology search results ■■ -
sp_hit_id Q59677
Definition sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit OS=Porphyromonas gingivalis
Align length 48
Score (bit) 36.2
E-value 0.093
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945610|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O05, 5'
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit OS=P...    36   0.093
sp|Q8KA59|ARLY_BUCAP Argininosuccinate lyase OS=Buchnera aphidic...    30   8.7  

>sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit
           OS=Porphyromonas gingivalis GN=mutB PE=3 SV=1
          Length = 715

 Score = 36.2 bits (82), Expect = 0.093
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +GVNH     K     LLW K  K++G +N  S  L  H   + +S+T
Sbjct: 285 IGVNHFMEIAKMRAARLLWAKIVKSFGAKNPKSLALRTHSQTSGWSLT 332


>sp|Q8KA59|ARLY_BUCAP Argininosuccinate lyase OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=argH PE=3 SV=1
          Length = 459

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 190 VARSIGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYAK 71
           +A S+GF S  NNA DS S R +L+   +    S+TH ++
Sbjct: 212 LAISMGFSSETNNALDSVSDRDYLIELLSASSISMTHLSR 251
tr_hit_id A0P0G2
Definition tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein OS=Labrenzia aggregata IAM 12614
Align length 83
Score (bit) 44.3
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945610|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O05, 5'
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein OS=Lab...    44   0.004
tr|B2RHY0|B2RHY0_PORG3 Methylmalonyl-CoA mutase large subunit OS...    36   0.98 
tr|A6LEB4|A6LEB4_PARD8 Methylmalonyl-CoA mutase, large subunit O...    35   1.7  
tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein OS=Manga...    32   2.5  
tr|B7BE77|B7BE77_9PORP Putative uncharacterized protein OS=Parab...    34   3.7  
tr|A7AL90|A7AL90_9PORP Putative uncharacterized protein OS=Parab...    34   3.7  
tr|B6YRJ8|B6YRJ8_AZOPC Cobalamin-dependent methylmalonyl-CoA mut...    34   4.9  
tr|A9UXE9|A9UXE9_MONBE Predicted protein OS=Monosiga brevicollis...    33   6.4  
tr|A9AP02|A9AP02_BURM1 Haloacid dehalogenase domain protein hydr...    33   8.3  
tr|B3D8X9|B3D8X9_BURM1 Phosphoglycolate phosphatase OS=Burkholde...    33   8.3  

>tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein
           OS=Labrenzia aggregata IAM 12614 GN=SIAM614_30706 PE=4
           SV=1
          Length = 242

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
 Frame = -3

Query: 238 EFGPIR-PLWRARFNLLVARS---IGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYA- 74
           E GP+  P++  RF++ VA +   + FG+    A+++T+ RL +    A+ +   T Y+ 
Sbjct: 163 EVGPLLYPVYLDRFDVFVASADDEVSFGT----ADETTAARLGIKPGEAIAVIERTAYSI 218

Query: 73  KGTPLKWKVRQARADNAKIRSRV 5
           KGTPL+W++ +  A+  + RSR+
Sbjct: 219 KGTPLEWRIARGPANRFRYRSRI 241


>tr|B2RHY0|B2RHY0_PORG3 Methylmalonyl-CoA mutase large subunit
           OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM
           20709 / JCM 12257) GN=PGN_0456 PE=4 SV=1
          Length = 715

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +GVNH     K     LLW K  K++G +N  S  L  H   + +S+T
Sbjct: 285 IGVNHFMEIAKMRAARLLWAKIVKSFGAKNPKSLALRTHSQTSGWSLT 332


>tr|A6LEB4|A6LEB4_PARD8 Methylmalonyl-CoA mutase, large subunit
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=BDI_2302 PE=4 SV=1
          Length = 715

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +GVNH     K     +LW K  K++G +N  S  L  H   + +S+T
Sbjct: 285 IGVNHFMEIAKMRAARMLWAKIVKSFGAKNPKSLALRTHSQTSGWSLT 332


>tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein
           OS=Manganese-oxidizing bacterium (strain SI85-9A1)
           GN=SI859A1_01496 PE=4 SV=1
          Length = 100

 Score = 32.3 bits (72), Expect(2) = 2.5
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 201 STCSWLDQSVSGQIETTPK-IQPHYAY 124
           STCSWLD SVSG I  T + +Q  + Y
Sbjct: 7   STCSWLDHSVSGLIRRTERPVQTRFRY 33



 Score = 21.6 bits (44), Expect(2) = 2.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 91 SLTHYAKGT 65
          SLTHY KGT
Sbjct: 47 SLTHYTKGT 55


>tr|B7BE77|B7BE77_9PORP Putative uncharacterized protein
           OS=Parabacteroides johnsonii DSM 18315
           GN=PRABACTJOHN_03354 PE=4 SV=1
          Length = 715

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +GVNH     K     +LW K  K++G +N  S  L  H   + +S+T
Sbjct: 285 IGVNHFMEIAKMRAARMLWAKIVKSFGAKNPKSLALRTHCQTSGWSLT 332


>tr|A7AL90|A7AL90_9PORP Putative uncharacterized protein
           OS=Parabacteroides merdae ATCC 43184 GN=PARMER_04215
           PE=4 SV=1
          Length = 733

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +GVNH     K     +LW K  K++G +N  S  L  H   + +S+T
Sbjct: 302 IGVNHFMEIAKMRAARMLWAKIVKSFGAKNPKSLALRTHCQTSGWSLT 349


>tr|B6YRJ8|B6YRJ8_AZOPC Cobalamin-dependent methylmalonyl-CoA mutase
           large subunit OS=Azobacteroides pseudotrichonymphae
           genomovar. CFP2 GN=CFPG_557 PE=4 SV=1
          Length = 717

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 272 LGVNHIATTPKSAIVELLWTK--KTYGQENESSFGLSPHKHANAFSIT 409
           +G+NH     K     LLW K  K++G +N  S  L  H   + +S+T
Sbjct: 285 IGMNHFMEIAKMRAGRLLWAKIVKSFGAKNPKSLALRTHSQTSGWSLT 332


>tr|A9UXE9|A9UXE9_MONBE Predicted protein OS=Monosiga brevicollis
            GN=7788 PE=4 SV=1
          Length = 2039

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 509  KGTQPQATKGEKLS*LHTVWPILLETAGFTV---VSQLLKKRSHACGAKDQRRTHFLAHR 339
            +G + Q+   +KL  L  + P   E   F V   V  + ++  H      +R+ H L HR
Sbjct: 1614 RGARIQSRPEQKL--LTFIGPAQSEAHSFEVQAHVMSMSERGGHRQVLLHERQWHMLPHR 1671

Query: 338  FFWSKGVQQWH 306
             FW    Q WH
Sbjct: 1672 IFWDHSGQSWH 1682


>tr|A9AP02|A9AP02_BURM1 Haloacid dehalogenase domain protein
           hydrolase OS=Burkholderia multivorans (strain ATCC 17616
           / 249) GN=Bmul_3729 PE=4 SV=1
          Length = 247

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -3

Query: 253 VCHIREFGPIRPLWRARFNLLVARSIGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYA 74
           + H+  F    P     F+ L AR I      +NAED    RL   A A V      H+A
Sbjct: 119 IAHVALF----PCVETTFDALAARGIRIAIATSNAEDVVRDRLGAHAAARVD-----HFA 169

Query: 73  KGTPLKWKVRQAR--ADNAKIRS 11
            G PL  K R+ R  AD A +R+
Sbjct: 170 CGIPLFGKARRLRALADEAGVRA 192


>tr|B3D8X9|B3D8X9_BURM1 Phosphoglycolate phosphatase OS=Burkholderia
           multivorans (strain ATCC 17616 / 249) GN=gph PE=4 SV=1
          Length = 207

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -3

Query: 253 VCHIREFGPIRPLWRARFNLLVARSIGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYA 74
           + H+  F    P     F+ L AR I      +NAED    RL   A A V      H+A
Sbjct: 79  IAHVALF----PCVETTFDALAARGIRIAIATSNAEDVVRDRLGAHAAARVD-----HFA 129

Query: 73  KGTPLKWKVRQAR--ADNAKIRS 11
            G PL  K R+ R  AD A +R+
Sbjct: 130 CGIPLFGKARRLRALADEAGVRA 152