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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945614
Clone id YMU02A01NGRL0009_O10
Library
Length 324
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAGGACCCGCTCTCCGAGAACATTGCAAAGCATTGGAAAACTAATGAAAGCCAGGCAGT
TAAAACAGCATAAAGAGTGGACCAGGCTGTACGCATCTGGAGCGTAGAGCTATGGAAATC
ACCTGATGTAGAAGTCGAGTTCTATGATGGTATGTCATACCGCAATTATTGTATGGCCGA
ATAGTATGATGCTAGTCAATAAATTCTGACAAAAAGAGATTCAAAGTTATATGTGCGTGT
TGTGGTCCATTCCGAATGAGCATGGCATGGAAACAGCGATAGAGGGTGCAAAAAATCCAA
ATGGAGTTCTAAGGTCATTCCTGT
■■Homology search results ■■ -
sp_hit_id Q9FZ48
Definition sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana
Align length 23
Score (bit) 44.7
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945614|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O10, 5'
         (324 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36 OS=Arabido...    45   1e-04
sp|Q94A97|UBC35_ARATH Ubiquitin carrier protein E2 35 OS=Arabido...    44   2e-04
sp|Q5R7J6|UBE2N_PONAB Ubiquitin-conjugating enzyme E2 N OS=Pongo...    37   0.030
sp|P61089|UBE2N_MOUSE Ubiquitin-conjugating enzyme E2 N OS=Mus m...    37   0.030
sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macac...    37   0.030
sp|P61088|UBE2N_HUMAN Ubiquitin-conjugating enzyme E2 N OS=Homo ...    37   0.030
sp|Q0P5K3|UBE2N_BOVIN Ubiquitin-conjugating enzyme E2 N OS=Bos t...    37   0.030
sp|Q5JXB2|UE2NL_HUMAN Putative ubiquitin-conjugating enzyme E2 N...    35   0.088
sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus ...    35   0.088
sp|Q86K32|UBE2N_DICDI Probable ubiquitin-conjugating enzyme E2 N...    35   0.15 
sp|P35128|UBE2N_DROME Ubiquitin-conjugating enzyme E2 N OS=Droso...    31   1.7  
sp|O13685|UBC13_SCHPO Ubiquitin-conjugating enzyme E2 13 OS=Schi...    31   1.7  
sp|O94533|YCA6_SCHPO Uncharacterized WD repeat-containing protei...    30   2.8  
sp|B0QZF7|PRCA1_MOUSE Protein PROCA1 OS=Mus musculus GN=Proca1 P...    30   2.8  
sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member ...    29   6.3  
sp|Q8TAK5|GABP2_HUMAN GA-binding protein subunit beta-2 OS=Homo ...    29   8.5  

>sp|Q9FZ48|UBC36_ARATH Ubiquitin carrier protein E2 36
           OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1
          Length = 153

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/23 (78%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWK+NE++AV+TA
Sbjct: 120 DDPLSENIAKHWKSNEAEAVETA 142



 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 39  KLMKARQLKQHKEWTRLYASGA 104
           K  +A  ++  KEWTRLYASGA
Sbjct: 132 KSNEAEAVETAKEWTRLYASGA 153


>sp|Q94A97|UBC35_ARATH Ubiquitin carrier protein E2 35
           OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1
          Length = 153

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWK+NE++AV TA
Sbjct: 120 DDPLSENIAKHWKSNEAEAVDTA 142


>sp|Q5R7J6|UBE2N_PONAB Ubiquitin-conjugating enzyme E2 N OS=Pongo
           abelii GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WKTNE+QA++TA
Sbjct: 118 DDPLANDVAEQWKTNEAQAIETA 140


>sp|P61089|UBE2N_MOUSE Ubiquitin-conjugating enzyme E2 N OS=Mus
           musculus GN=Ube2n PE=1 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WKTNE+QA++TA
Sbjct: 118 DDPLANDVAEQWKTNEAQAIETA 140


>sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macaca
           fascicularis GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WKTNE+QA++TA
Sbjct: 118 DDPLANDVAEQWKTNEAQAIETA 140


>sp|P61088|UBE2N_HUMAN Ubiquitin-conjugating enzyme E2 N OS=Homo
           sapiens GN=UBE2N PE=1 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WKTNE+QA++TA
Sbjct: 118 DDPLANDVAEQWKTNEAQAIETA 140


>sp|Q0P5K3|UBE2N_BOVIN Ubiquitin-conjugating enzyme E2 N OS=Bos
           taurus GN=UBE2N PE=2 SV=1
          Length = 152

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WKTNE+QA++TA
Sbjct: 118 DDPLANDVAEQWKTNEAQAIETA 140


>sp|Q5JXB2|UE2NL_HUMAN Putative ubiquitin-conjugating enzyme E2
           N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1
          Length = 153

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++ + WKTNE+QA++TA
Sbjct: 119 DDPLANDVVEQWKTNEAQAIETA 141


>sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus
           norvegicus GN=Ube2n PE=1 SV=1
          Length = 152

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 12/23 (52%), Positives = 21/23 (91%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+ WK+NE+QA++TA
Sbjct: 118 DDPLANDVAEQWKSNEAQAIETA 140


>sp|Q86K32|UBE2N_DICDI Probable ubiquitin-conjugating enzyme E2 N
           OS=Dictyostelium discoideum GN=ube2n PE=3 SV=1
          Length = 139

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ ++A+HWKTNE +A+  A
Sbjct: 103 DDPLANDVAEHWKTNEKEAMARA 125
tr_hit_id A9TIG8
Definition tr|A9TIG8|A9TIG8_PHYPA Ubiquitin carrier protein OS=Physcomitrella patens subsp. patens
Align length 23
Score (bit) 44.7
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945614|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O10, 5'
         (324 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TIG8|A9TIG8_PHYPA Ubiquitin carrier protein OS=Physcomitrel...    45   2e-05
tr|A9PBY5|A9PBY5_POPTR Ubiquitin carrier protein OS=Populus tric...    46   8e-04
tr|A9NUN0|A9NUN0_PICSI Ubiquitin carrier protein OS=Picea sitche...    46   8e-04
tr|A7P1Z0|A7P1Z0_VITVI Ubiquitin carrier protein OS=Vitis vinife...    46   8e-04
tr|Q9SEA9|Q9SEA9_MESCR Ubiquitin carrier protein (Fragment) OS=M...    45   0.002
tr|B3TLW5|B3TLW5_ELAGV Ubiquitin-conjugating enzyme 1 OS=Elaeis ...    45   0.002
tr|A9PA76|A9PA76_POPTR Ubiquitin carrier protein OS=Populus tric...    45   0.002
tr|A9NNB1|A9NNB1_PICSI Ubiquitin carrier protein OS=Picea sitche...    45   0.002
tr|Q9XHP3|Q9XHP3_CATRO Ubiquitin carrier protein OS=Catharanthus...    45   0.002
tr|Q45W77|Q45W77_ARAHY Ubiquitin carrier protein OS=Arachis hypo...    45   0.002
tr|Q06H20|Q06H20_ARAHY Ubiquitin carrier protein OS=Arachis hypo...    45   0.002
tr|B7FMQ3|B7FMQ3_MEDTR Putative uncharacterized protein OS=Medic...    45   0.002
tr|A7PJG9|A7PJG9_VITVI Chromosome chr12 scaffold_18, whole genom...    45   0.002
tr|B6T1X2|B6T1X2_MAIZE Ubiquitin-conjugating enzyme E2 N OS=Zea ...    44   0.005
tr|Q8W0I1|Q8W0I1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa...    43   0.007
tr|B8A797|B8A797_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A9SCM3|A9SCM3_PHYPA Ubiquitin carrier protein OS=Physcomitrel...    43   0.007
tr|A5C7E3|A5C7E3_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|A2ZWF9|A2ZWF9_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.007
tr|B6TFR0|B6TFR0_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|B6SIC6|B6SIC6_MAIZE Ubiquitin-conjugating enzyme E2 N OS=Zea ...    42   0.015
tr|B4FCU7|B4FCU7_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|B4FPA1|B4FPA1_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|A8HQ77|A8HQ77_CHLRE Ubiquitin carrier protein OS=Chlamydomona...    39   0.13 
tr|Q95XX0|Q95XX0_CAEEL Ubiquitin carrier protein OS=Caenorhabdit...    38   0.22 
tr|Q4TW93|Q4TW93_CAERE Ubiquitin carrier protein (Fragment) OS=C...    38   0.22 
tr|A8XI38|A8XI38_CAEBR Ubiquitin carrier protein OS=Caenorhabdit...    38   0.22 
tr|Q803J2|Q803J2_DANRE Ubiquitin carrier protein OS=Danio rerio ...    38   0.29 
tr|A8PSY1|A8PSY1_BRUMA Ubiquitin carrier protein OS=Brugia malay...    34   0.46 
tr|Q7SZ88|Q7SZ88_XENLA Ubiquitin carrier protein OS=Xenopus laev...    37   0.49 

>tr|A9TIG8|A9TIG8_PHYPA Ubiquitin carrier protein OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_170260 PE=3 SV=1
          Length = 157

 Score = 44.7 bits (104), Expect(2) = 2e-05
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPL+ENIAKHWKTNE +AV+TA
Sbjct: 124 DDPLAENIAKHWKTNEQEAVETA 146



 Score = 26.6 bits (57), Expect(2) = 2e-05
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 72  KEWTRLYASGA 104
           +EWTRLYASGA
Sbjct: 147 REWTRLYASGA 157


>tr|A9PBY5|A9PBY5_POPTR Ubiquitin carrier protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE++AV+TA
Sbjct: 120 DDPLSENIAKHWKTNEAEAVETA 142


>tr|A9NUN0|A9NUN0_PICSI Ubiquitin carrier protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE++AV+TA
Sbjct: 120 DDPLSENIAKHWKTNEAEAVETA 142


>tr|A7P1Z0|A7P1Z0_VITVI Ubiquitin carrier protein OS=Vitis vinifera
           GN=GSVIVT00027804001 PE=3 SV=1
          Length = 153

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE++AV+TA
Sbjct: 120 DDPLSENIAKHWKTNEAEAVETA 142


>tr|Q9SEA9|Q9SEA9_MESCR Ubiquitin carrier protein (Fragment)
           OS=Mesembryanthemum crystallinum GN=Ubc1 PE=2 SV=1
          Length = 89

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE +AV+TA
Sbjct: 56  DDPLSENIAKHWKTNEVEAVETA 78


>tr|B3TLW5|B3TLW5_ELAGV Ubiquitin-conjugating enzyme 1 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 153

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 18/23 (78%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLS+NIAKHWKTNE++AV+TA
Sbjct: 120 DDPLSDNIAKHWKTNEAEAVETA 142


>tr|A9PA76|A9PA76_POPTR Ubiquitin carrier protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE +AV+TA
Sbjct: 120 DDPLSENIAKHWKTNEVEAVETA 142


>tr|A9NNB1|A9NNB1_PICSI Ubiquitin carrier protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWKTNE +AV+TA
Sbjct: 120 DDPLSENIAKHWKTNEVEAVETA 142


>tr|Q9XHP3|Q9XHP3_CATRO Ubiquitin carrier protein OS=Catharanthus
           roseus GN=UBIE2 PE=2 SV=1
          Length = 153

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 18/23 (78%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWK+NE++AV+TA
Sbjct: 120 DDPLSENIAKHWKSNEAEAVETA 142


>tr|Q45W77|Q45W77_ARAHY Ubiquitin carrier protein OS=Arachis
           hypogaea PE=2 SV=1
          Length = 153

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 18/23 (78%), Positives = 23/23 (100%)
 Frame = +2

Query: 2   EDPLSENIAKHWKTNESQAVKTA 70
           +DPLSENIAKHWK+NE++AV+TA
Sbjct: 120 DDPLSENIAKHWKSNEAEAVETA 142