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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945615
Clone id YMU02A01NGRL0009_O11
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGATCGATGGTTACGAGTGCAAAAGGAGGCAGACCTCATGGTCCTTTGCTGAAGGAAACA
AAACTGCTCATGCCAATCAAAGGAAAAGCATCCTCTTTGCAAGTAGGGAAGCGGAAAAGG
CACGAGAAGCAAGAGTTAATTTCAAAAGAAGAGGCAGATGCGCTGAAGGCCAGAGAAGCT
GCGAAGAAAAGAGTACAAGAAAGGGAGAAAGGCTTATTGGGCTTGTATCAATCTTACTGA
TGTATGAAGGTGGCGTTAACCTGGTCGCTAATGCGAGGCATTTTCAGATATACTTGTTAA
AGGCTTGGCTTTGCTTTCATTAGAATGGGCTGGTACTGCAGCCACCTTGTCAAGGATGAA
CAAAGATGATTTTCAGGACTGCTTGCCTGCTGATTTGCAGCTGAGTCCTGTAATTTGGAA
ATTCTTCAGGTTGAGGGAAACATAAAAGGATGGACGAATCTTGCTCACGTTCGAGTTGTG
GTCAAGTCAAAGGTCAGCCTTTTCTGATGTAACTTATACTTACAATTTAGTTATATAAAT
GAAACTGATGTGCCAAGTTGTTCATGCAAGCACTTGCAAATGCGCAAGAATGTGCACATT
GACAGTAAATTGTATCTTCCCATCTGGTCTTTTGAGGCTTTCCAAAAAGGATTTGAAAGC
CCTGGTGCTAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9KC68
Definition sp|Q9KC68|RACA_BACHD Chromosome-anchoring protein racA OS=Bacillus halodurans
Align length 59
Score (bit) 31.2
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945615|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O11, 5'
         (669 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KC68|RACA_BACHD Chromosome-anchoring protein racA OS=Bacill...    31   5.2  
sp|P53935|NST1_YEAST Stress response protein NST1 OS=Saccharomyc...    31   5.2  
sp|A6ZRZ0|NST1_YEAS7 Stress response protein NST1 OS=Saccharomyc...    31   5.2  
sp|Q5R328|RSPO3_DANRE R-spondin-3 OS=Danio rerio GN=rspo3 PE=2 SV=2    31   6.8  
sp|Q96T17|MA7D2_HUMAN MAP7 domain-containing protein 2 OS=Homo s...    30   8.8  

>sp|Q9KC68|RACA_BACHD Chromosome-anchoring protein racA OS=Bacillus
           halodurans GN=racA PE=3 SV=1
          Length = 174

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 37  HGPLLKETKLLMPIKGKASSLQVGKRKR----HEKQELISKEEADALKAREAAKKRVQE 201
           HG LL E + L  +K   + L+ GK+ R     E ++LI K E   + A E  ++R ++
Sbjct: 37  HGHLLFEKEHLTVLKAIQNQLKSGKKMRDVVIEENEQLIQKPETQPMVATEQYEQRTKQ 95


>sp|P53935|NST1_YEAST Stress response protein NST1 OS=Saccharomyces
           cerevisiae GN=NST1 PE=1 SV=1
          Length = 1240

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 109 KRKRHEKQELISKE-EADALKAREAAKKRVQEREK 210
           KRKR E++E + KE E   ++ REA +K+V+E ++
Sbjct: 667 KRKREEEKERLKKELEEREMRRREAQRKKVEEAKR 701


>sp|A6ZRZ0|NST1_YEAS7 Stress response protein NST1 OS=Saccharomyces
           cerevisiae (strain YJM789) GN=NST1 PE=3 SV=1
          Length = 1240

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 109 KRKRHEKQELISKE-EADALKAREAAKKRVQEREK 210
           KRKR E++E + KE E   ++ REA +K+V+E ++
Sbjct: 667 KRKREEEKERLKKELEEREMRRREAQRKKVEEAKR 701


>sp|Q5R328|RSPO3_DANRE R-spondin-3 OS=Danio rerio GN=rspo3 PE=2 SV=2
          Length = 317

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 34  PHGPLLKETKLLMPIKGKASSLQVGKRKRHEKQELISKEEADALKAREAAKKRVQEREKG 213
           P G    E K    ++ K ++    +RKR  ++E I +EE++     E  ++R Q R+ G
Sbjct: 256 PKGQRRGEKKKRFNLQEKVTAEARRERKREREKETIDREESENRNKTEQRRRRDQSRDAG 315


>sp|Q96T17|MA7D2_HUMAN MAP7 domain-containing protein 2 OS=Homo
           sapiens GN=MAP7D2 PE=2 SV=1
          Length = 732

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +1

Query: 82  GKASSLQVGKR------KRHEKQELISKEEADALKAREAAKKRVQER 204
           G+A+ +   KR      K  E+QE + KEE D L+  E  +K  +ER
Sbjct: 398 GEAAKILAEKRRQARLQKEQEEQERVEKEEQDRLEREELKRKAEEER 444
tr_hit_id Q69Y13
Definition tr|Q69Y13|Q69Y13_ORYSJ Os06g0215200 protein OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 70.5
E-value 9.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945615|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O11, 5'
         (669 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69Y13|Q69Y13_ORYSJ Os06g0215200 protein OS=Oryza sativa subs...    70   9e-11
tr|A2YAN6|A2YAN6_ORYSI Putative uncharacterized protein OS=Oryza...    70   9e-11
tr|A9TMY5|A9TMY5_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   2e-10
tr|A9PJ87|A9PJ87_POPJC Putative uncharacterized protein OS=Popul...    67   1e-09
tr|A5BH41|A5BH41_VITVI Putative uncharacterized protein OS=Vitis...    66   2e-09
tr|B6U4V4|B6U4V4_MAIZE Nucleic acid binding protein OS=Zea mays ...    66   2e-09
tr|B4FYD1|B4FYD1_MAIZE Putative uncharacterized protein OS=Zea m...    66   2e-09
tr|Q94AV7|Q94AV7_ARATH At1g49590/F14J22_9 (Fragment) OS=Arabidop...    62   4e-08
tr|Q7XA66|Q7XA66_ARATH At1g49590 OS=Arabidopsis thaliana GN=At1g...    62   4e-08
tr|Q54MJ1|Q54MJ1_DICDI LIM domain-containing protein OS=Dictyost...    39   0.39 
tr|B5DZK3|B5DZK3_DROPS GA24071 OS=Drosophila pseudoobscura pseud...    37   1.5  
tr|A8DUR5|A8DUR5_NEMVE Predicted protein OS=Nematostella vectens...    36   1.9  
tr|A7SU33|A7SU33_NEMVE Predicted protein OS=Nematostella vectens...    36   1.9  
tr|Q9U599|Q9U599_DROME Gomdanji OS=Drosophila melanogaster GN=go...    36   2.5  
tr|B4QH29|B4QH29_DROSI GD11650 OS=Drosophila simulans GN=GD11650...    36   2.5  
tr|B4I808|B4I808_DROSE GM15887 OS=Drosophila sechellia GN=GM1588...    36   2.5  
tr|Q8YA57|Q8YA57_LISMO Lmo0304 protein OS=Listeria monocytogenes...    35   3.3  
tr|Q4EM39|Q4EM39_LISMO Putative uncharacterized protein OS=Liste...    35   4.3  
tr|A4RV96|A4RV96_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   4.3  
tr|Q0QKF1|Q0QKF1_9SYNE 30S ribosomal protein S1 homolog B OS=unc...    35   5.6  
tr|B4P7E7|B4P7E7_DROYA GE14159 OS=Drosophila yakuba GN=GE14159 P...    35   5.6  
tr|B3NND7|B3NND7_DROER GG22166 OS=Drosophila erecta GN=GG22166 P...    35   5.6  
tr|A6NYF1|A6NYF1_9BACE Putative uncharacterized protein OS=Bacte...    34   7.3  
tr|Q496Y9|Q496Y9_RAT LOC288526 protein (Fragment) OS=Rattus norv...    34   9.5  
tr|B2RYB9|B2RYB9_RAT LOC288526 protein OS=Rattus norvegicus GN=L...    34   9.5  

>tr|Q69Y13|Q69Y13_ORYSJ Os06g0215200 protein OS=Oryza sativa subsp.
           japonica GN=P0537F07.21-1 PE=2 SV=1
          Length = 243

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
 Frame = +1

Query: 10  VTSAKGGRPHGPLLKET-KLLMPIKGKASSLQVGKRKRHE-KQELISKEEADALKAREAA 183
           V + KGG+  G ++K+    +  +KG  S++ V KRKR + K ++ISKEE  ALKAREAA
Sbjct: 166 VPTIKGGQAPGLVVKKPLNPMRTVKGAPSAIAVNKRKREDGKPKVISKEEEAALKAREAA 225

Query: 184 KKRVQEREKGLLGLYQSY 237
           +KR+++REK L+GLY+SY
Sbjct: 226 RKRMEDREKPLMGLYRSY 243


>tr|A2YAN6|A2YAN6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22152 PE=4 SV=1
          Length = 243

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
 Frame = +1

Query: 10  VTSAKGGRPHGPLLKET-KLLMPIKGKASSLQVGKRKRHE-KQELISKEEADALKAREAA 183
           V + KGG+  G ++K+    +  +KG  S++ V KRKR + K ++ISKEE  ALKAREAA
Sbjct: 166 VPTIKGGQAPGLVVKKPLNPMRTVKGAPSAIAVNKRKREDGKPKVISKEEEAALKAREAA 225

Query: 184 KKRVQEREKGLLGLYQSY 237
           +KR+++REK L+GLY+SY
Sbjct: 226 RKRMEDREKPLMGLYRSY 243


>tr|A9TMY5|A9TMY5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_147981 PE=4 SV=1
          Length = 259

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/53 (69%), Positives = 42/53 (79%)
 Frame = +1

Query: 79  KGKASSLQVGKRKRHEKQELISKEEADALKAREAAKKRVQEREKGLLGLYQSY 237
           KG ASSL+V KR+R EK   +S EEA AL AREAAKKRV +REK LLGLYQ+Y
Sbjct: 207 KGVASSLEVTKRRRDEKTGPVSSEEAAALAAREAAKKRVLDREKSLLGLYQAY 259


>tr|A9PJ87|A9PJ87_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 250

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  SAKGGRPHGPLLKETKLLMP---IKGKASSLQVGKRKR-HEKQELISKEEADALKAREAA 183
           +A+ G P GP++  +  L P   +KG  S   V KRKR  EK + +S EE  ALKAREAA
Sbjct: 176 AAQSGPPPGPVVSAS--LNPRRSVKGAPSKFAVNKRKRPDEKPKAVSVEEKAALKAREAA 233

Query: 184 KKRVQEREKGLLGLYQ 231
           +KRV+EREK LLGLYQ
Sbjct: 234 RKRVEEREKSLLGLYQ 249


>tr|A5BH41|A5BH41_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017085 PE=4 SV=1
          Length = 257

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
 Frame = +1

Query: 22  KGGRPHGPLLKETKLLMPIKGKA---SSLQVGKRKRH-EKQELISKEEADALKAREAAKK 189
           + G P GP++  +  L P +      SS+ + KRKR  EK + +SKEEA ALKAREAAKK
Sbjct: 184 QNGPPPGPVVSAS--LNPRRSSKCAPSSVAINKRKRQDEKPKAVSKEEAAALKAREAAKK 241

Query: 190 RVQEREKGLLGLYQS 234
           RV+EREK LLGLY S
Sbjct: 242 RVEEREKSLLGLYGS 256


>tr|B6U4V4|B6U4V4_MAIZE Nucleic acid binding protein OS=Zea mays
           PE=2 SV=1
          Length = 246

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
 Frame = +1

Query: 10  VTSAKGGRPHGPLL-KETKLLMPIKGKA--SSLQVGKRKRHE-KQELISKEEADALKARE 177
           V + KGG   G ++ K    + PIKG    S++ V KRKR + K + +SKEE  ALKARE
Sbjct: 167 VPAIKGGAAPGRVVTKPLNPMRPIKGTPAPSAVAVNKRKRDDGKPKAVSKEEEAALKARE 226

Query: 178 AAKKRVQEREKGLLGLYQSY 237
           AA+KRV++REK L+GLY++Y
Sbjct: 227 AARKRVEDREKPLMGLYKTY 246


>tr|B4FYD1|B4FYD1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 246

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
 Frame = +1

Query: 10  VTSAKGGRPHGPLL-KETKLLMPIKGKA--SSLQVGKRKRHE-KQELISKEEADALKARE 177
           V + KGG   G ++ K    + PIKG    S++ V KRKR + K + +SKEE  ALKARE
Sbjct: 167 VPAIKGGAAPGRVVTKPLNPMRPIKGTPAPSAVAVNKRKRDDGKPKAVSKEEEAALKARE 226

Query: 178 AAKKRVQEREKGLLGLYQSY 237
           AA+KRV++REK L+GLY++Y
Sbjct: 227 AARKRVEDREKPLMGLYKTY 246


>tr|Q94AV7|Q94AV7_ARATH At1g49590/F14J22_9 (Fragment) OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 111

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
 Frame = +1

Query: 28  GRPHGPLLKETKLLMP---IKGKASSLQVGKRKRH---EKQELISKEEADALKAREAAKK 189
           G+P G L+  T  L P   +KG ASS+ +G  KR    EK + +S EE  ALKAREAA+K
Sbjct: 37  GKPPGRLV--TASLNPKRAVKGAASSVDLGNNKRKRQDEKPKKVSAEEKAALKAREAARK 94

Query: 190 RVQEREKGLLGLY 228
           RV++REK LLGLY
Sbjct: 95  RVEDREKPLLGLY 107


>tr|Q7XA66|Q7XA66_ARATH At1g49590 OS=Arabidopsis thaliana
           GN=At1g49590 PE=2 SV=1
          Length = 242

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
 Frame = +1

Query: 28  GRPHGPLLKETKLLMP---IKGKASSLQVGKRKRH---EKQELISKEEADALKAREAAKK 189
           G+P G L+  T  L P   +KG ASS+ +G  KR    EK + +S EE  ALKAREAA+K
Sbjct: 168 GKPPGRLV--TASLNPKRAVKGAASSVDLGNNKRKRQDEKPKKVSAEEKAALKAREAARK 225

Query: 190 RVQEREKGLLGLY 228
           RV++REK LLGLY
Sbjct: 226 RVEDREKPLLGLY 238


>tr|Q54MJ1|Q54MJ1_DICDI LIM domain-containing protein OS=Dictyostelium
            discoideum GN=DDB_0233145 PE=4 SV=1
          Length = 1061

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = +1

Query: 43   PLLKETKLLMPIKGKASSLQVGKRKRHEKQELISKEEADALKAREAAKKRVQEREK 210
            PL ++T   M  K   SSL+  K+KR E++ L  +EEA+ L+  E  KK++QEREK
Sbjct: 952  PLFEQT---MTTKSTISSLEEYKKKREERKRL--QEEAEKLE-EELKKKKIQEREK 1001