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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945616
Clone id YMU02A01NGRL0009_O12
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTTACCGGCAAGGGTCCTATTG
AAAACCTGTCTGATCACTTGGCGGACCCCGCCATCAACAACGCCTGGGCTTACGCCACCA
ACTTCACCCCCGGAAAGCGAAACGGAGCTGTCCTGGCTGTTCAATTGTGGCTATGGCCTT
CGTCTTAAGTGGTTAAACGAATGTTGTGTAACTCATTGAGCTTTTTTGGCAATGTAAAGT
TAAGAAATACTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 45
Score (bit) 97.4
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945616|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O12, 5'
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    97   2e-20
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...    92   1e-18
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...    91   2e-18
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop...    91   2e-18
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb...    91   2e-18
sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 memb...    90   3e-18
sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chl...    90   3e-18
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...    90   3e-18
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...    90   4e-18
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...    90   4e-18
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl...    90   4e-18
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...    90   4e-18
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl...    90   4e-18
sp|P08222|CB22_CUCSA Chlorophyll a-b binding protein of LHCII ty...    90   4e-18
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl...    90   4e-18
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty...    90   4e-18
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...    89   5e-18
sp|Q00827|CB48_MAIZE Chlorophyll a-b binding protein 48, chlorop...    89   7e-18
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...    89   7e-18
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...    89   7e-18
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...    89   7e-18
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...    89   7e-18
sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty...    89   7e-18
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...    89   7e-18
sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragmen...    89   9e-18
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...    89   9e-18
sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro...    89   9e-18
sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloro...    89   9e-18
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...    89   9e-18
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...    89   9e-18

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENLSDHLADPA+NNAWAYATNFTPGK
Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265


>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5,
           chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5
           PE=2 SV=1
          Length = 237

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENLSDH+ADP  NNAWAYATNF PGK
Sbjct: 193 MFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
           1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 274

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 230 MFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274


>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A,
           chloroplastic OS=Pyrus pyrifolia PE=2 SV=1
          Length = 278

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 234 MFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278


>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member
           1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 278

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 234 MFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278


>sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 member
           2 (Fragment) OS=Pinus sylvestris PE=2 SV=1
          Length = 150

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 41/45 (91%), Positives = 41/45 (91%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL DHLADP  NNAWAYATNF PGK
Sbjct: 106 MFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150


>sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I,
           chloroplastic OS=Pinus thunbergii PE=2 SV=1
          Length = 266

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 41/45 (91%), Positives = 41/45 (91%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL DHLADP  NNAWAYATNF PGK
Sbjct: 222 MFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266


>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151,
           chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2
          Length = 265

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 41/45 (91%), Positives = 41/45 (91%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL DHLADP  NNAWAYATNF PGK
Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
           chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
          Length = 265

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265


>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40,
           chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1
          Length = 267

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
tr_hit_id Q38713
Definition tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein OS=Amaranthus hypochondriacus
Align length 45
Score (bit) 92.4
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945616|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O12, 5'
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein OS=Amaran...    92   1e-17
tr|Q41449|Q41449_SOLTU Chlorophyll a,b binding protein type I OS...    92   2e-17
tr|Q40958|Q40958_PINPA Type 2 light-harvesting chlorophyll a/b-b...    92   2e-17
tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding...    91   2e-17
tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding...    91   2e-17
tr|O48657|O48657_FAGCR Chlorophyll a/b-binding protein OS=Fagus ...    91   2e-17
tr|B2BAK8|B2BAK8_LILLO Chlorophyll a/b binding protein of LHCII ...    91   2e-17
tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus ...    91   3e-17
tr|Q40788|Q40788_PINCO Chlorophyll a/b binding protein OS=Pinus ...    91   3e-17
tr|O49812|O49812_BETVU Chlorophyll a/b-binding protein OS=Beta v...    91   3e-17
tr|A9NP21|A9NP21_PICSI Putative uncharacterized protein OS=Picea...    91   3e-17
tr|A9NLD5|A9NLD5_PICSI Putative uncharacterized protein OS=Picea...    91   3e-17
tr|Q41234|Q41234_PINTH Chlorophyll a/b-binding protein OS=Pinus ...    91   4e-17
tr|Q41007|Q41007_PEA Chlorophyll a/b-binding protein (Fragment) ...    91   4e-17
tr|Q40957|Q40957_PINPA Type 1 light-harvesting chlorophyll a/b-b...    91   4e-17
tr|B6V6T6|B6V6T6_9CONI Putative chloroplast chlorophyll a/b-bind...    91   4e-17
tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9SGM1|A9SGM1_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9RNP2|A9RNP2_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9RBQ5|A9RBQ5_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9RBQ3|A9RBQ3_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9RAR8|A9RAR8_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|A9P1P6|A9P1P6_PICSI Putative uncharacterized protein OS=Picea...    91   4e-17
tr|A9NK15|A9NK15_PICSI Putative uncharacterized protein OS=Picea...    91   4e-17
tr|Q8RVI4|Q8RVI4_PINPS Putative chlorophyll A-B binding protein ...    90   5e-17
tr|Q5PYQ1|Q5PYQ1_MANES Chloroplast chlorophyll A/B binding prote...    90   5e-17
tr|Q40956|Q40956_PINPA Type 2 light-harvesting chlorophyll a/b-b...    90   5e-17
tr|Q40934|Q40934_PSEMZ Light-harvesting chlorophyll a/b binding ...    90   5e-17

>tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein
           OS=Amaranthus hypochondriacus GN=Lhcb2*Ah1 PE=4 SV=1
          Length = 264

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 42/45 (93%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENLSDHLADP  NNAWAYATNF PGK
Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAYATNFVPGK 264


>tr|Q41449|Q41449_SOLTU Chlorophyll a,b binding protein type I
           OS=Solanum tuberosum PE=4 SV=1
          Length = 265

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENLSDH+ADP  NNAWAYATNF PGK
Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 265


>tr|Q40958|Q40958_PINPA Type 2 light-harvesting chlorophyll
           a/b-binding polypeptide (Fragment) OS=Pinus palustris
           GN=Lhcb2 PE=2 SV=1
          Length = 55

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 42/45 (93%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL DHLADPA NNAWAYATNF PGK
Sbjct: 11  MFSMFGFFVQAIVTGKGPIENLYDHLADPAANNAWAYATNFVPGK 55


>tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding
           protein Lhcb1*2-2 OS=Picea abies GN=Lhcb1*2-2 PE=2 SV=1
          Length = 275

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 231 MFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 275


>tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding
           protein Lhcb1*2-1 OS=Picea abies GN=Lhcb1*2-1 PE=2 SV=1
          Length = 274

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 230 MFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 274


>tr|O48657|O48657_FAGCR Chlorophyll a/b-binding protein OS=Fagus
           crenata PE=2 SV=1
          Length = 264

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 264


>tr|B2BAK8|B2BAK8_LILLO Chlorophyll a/b binding protein of LHCII
           type I OS=Lilium longiflorum PE=2 SV=1
          Length = 264

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGP+ENL DHLADPA NNAWAYATNF PGK
Sbjct: 220 MFSMFGFFVQAIVTGKGPVENLYDHLADPATNNAWAYATNFVPGK 264


>tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus
           contorta GN=cab PE=4 SV=1
          Length = 274

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 230 MFSMFGFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPGK 274


>tr|Q40788|Q40788_PINCO Chlorophyll a/b binding protein OS=Pinus
           contorta GN=CAB PE=3 SV=1
          Length = 274

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 230 MFSMFGFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPGK 274


>tr|O49812|O49812_BETVU Chlorophyll a/b-binding protein OS=Beta
           vulgaris subsp. vulgaris PE=2 SV=1
          Length = 264

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 41/45 (91%), Positives = 42/45 (93%)
 Frame = +3

Query: 3   MFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 137
           MFSMFGFFVQAIVTGKGPIENLSDHLADP  NNAWA+ATNF PGK
Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAFATNFVPGK 264