DK945617
Clone id YMU02A01NGRL0009_O13
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CTCTAACCACACAGTGGCACCTCTCTCTCTCTCTCTCTCTCGTATGGCAGCATCCGATGA
GGAGGAGAGTTCCAGTCGTCGGCGGCAGAGGATTGCAGAACGAAGGGGTGGATTCAGCCC
GAGCGGACGGCCTCTCGACTATCAAGGAAGCCAGAATTGGGAGACTCGAATTGCCACTCG
CACTTTCTATGGAGCTGCAATTGGAGCTCTTGCTGGACTGGGAGTGGGAATCTACAAAAA
GCAGAATCCTTTTATATGGTCTACATCAATGGGAGGCAATTGGGCGATAGCTACATGCGT
CTTTTGTGGGTTTCAAGAGTTGACTCGGGAAATTCGAGCTGCTGAGCCAGATGATTGGGC
TAATTGCTTTCTTGGTGGGCTTGCGAGTGGAGCTTTGCTGGGCAGGATTCAAGGTGGGCC
TGCAAGAGCTCTTCCAATGGCTGTACTGTTCGCTTTTGTTGGTACAGGAATAAACCATGG
TGCGGATCTTTTCAAAGAATACAGGCTGCAACGTCTGTTGGCCTCTCTACCTTCTGAAGA
CGCCCTGCCT
■■Homology search results ■■ -
sp_hit_id Q921V5
Definition sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus
Align length 66
Score (bit) 33.9
E-value 0.54
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945617|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O13, 5'
(550 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-a... 34 0.54
sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein 2-beta-N-ace... 33 0.70
sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium ... 31 4.5
sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita G... 31 4.6
sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicas... 30 5.9
sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicas... 30 5.9
sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicas... 30 5.9
sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul... 30 6.0
sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1 OS=Chl... 30 7.8
sp|P15304|LIPS_RAT Hormone-sensitive lipase OS=Rattus norvegicus... 30 7.8

>sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein
2-beta-N-acetylglucosaminyltransferase OS=Mus musculus
GN=Mgat2 PE=2 SV=1
Length = 442

Score = 33.9 bits (76), Expect = 0.54
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1

Query: 439 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 263
H K +CRP+ AQ S K+ + P + FP + P + + I H C
Sbjct: 376 HHKKTCRPSTQSAQIESLLNSNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435

Query: 262 RPYKRI 245
+ Y+R+
Sbjct: 436 KSYRRL 441


>sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein
2-beta-N-acetylglucosaminyltransferase OS=Rattus
norvegicus GN=Mgat2 PE=1 SV=1
Length = 442

Score = 33.5 bits (75), Expect = 0.70
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1

Query: 439 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 263
H K +CRP+ AQ S K+ + P + FP + P + + I H C
Sbjct: 376 HHKKTCRPSTQSAQIESLLNNNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435

Query: 262 RPYKRI 245
+ Y+R+
Sbjct: 436 KSYRRL 441


>sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium
thermophilum GN=nfo PE=3 SV=1
Length = 276

Score = 30.8 bits (68), Expect = 4.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3

Query: 464 YQQKRTVQPLEELLQAHLESCPAKLHSQAHQESN*PNHLAQQLE 333
Y + R V+ L LL+A+ SCP L + A S HL + +E
Sbjct: 116 YGRARMVETLNRLLEAYTGSCPLLLENTAGMGSELGTHLEELME 159


>sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita
GN=AA-PRI1 PE=2 SV=1
Length = 145

Score = 30.8 bits (68), Expect = 4.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1

Query: 181 HFLWSCNWSS---CWTGSGNLQKAESFYMVYINGRQLGDSYMRLLWVSRVDSGN 333
HF W C W S WT SG+ K +MV +G+ L + + V + GN
Sbjct: 96 HFYWECPWGSKRNTWTPSGSNTK----WMVEWSGQNLDSGALGTITVDVLRKGN 145


>sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicase
ruvB OS=Pelobacter propionicus (strain DSM 2379) GN=ruvB
PE=3 SV=1
Length = 338

Score = 30.4 bits (67), Expect = 5.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3

Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408
+ERP D+AA + +PH LF+ + R +EE+L +E
Sbjct: 88 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128


>sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicase
ruvB OS=Geobacter sulfurreducens GN=ruvB PE=3 SV=1
Length = 338

Score = 30.4 bits (67), Expect = 5.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3

Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408
+ERP D+AA + +PH LF+ + R +EE+L +E
Sbjct: 88 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128


>sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicase
ruvB OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=ruvB PE=3 SV=1
Length = 338

Score = 30.4 bits (67), Expect = 5.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3

Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408
+ERP D+AA + +PH LF+ + R +EE+L +E
Sbjct: 87 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 127


>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus
GN=Ranbp2 PE=1 SV=1
Length = 3053

Score = 30.4 bits (67), Expect = 6.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -1

Query: 505 PVFFEKIRTMVYSCTNKSEQYSH----WKSSCRPTLNPAQQSSTRKPTKKAISP 356
PV E ++ M+ S + E YS +K+ C + + + ST PTK ++SP
Sbjct: 736 PVPLESVKEMLNSVMQELEDYSEGGTLYKNGCWRSADSELKHSTPSPTKYSLSP 789


>sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1
OS=Chlamydia pneumoniae GN=pmp1 PE=2 SV=1
Length = 922

Score = 30.0 bits (66), Expect = 7.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1

Query: 181 HFLWSCNWSSCWTGSGNLQKAESFYMVYINGR----QLGDSYMRLLWVSRVD 324
H+ + NW WTG+GN K F+ IN + + G+ +LW + VD
Sbjct: 557 HYGFQGNWKLAWTGTGN--KVGEFFWDKINYKPRPEKEGNLVPNILWGNAVD 606


>sp|P15304|LIPS_RAT Hormone-sensitive lipase OS=Rattus norvegicus
GN=Lipe PE=1 SV=3
Length = 1068

Score = 30.0 bits (66), Expect = 7.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2

Query: 549 GRASSEGREANRRCSLYSLKRSAPWFIPVPTKANSTAIGRALAGPP*ILPSKAPLASPPR 370
G+ + +E R S P P T+ +T+I +A++GP LP++ L S R
Sbjct: 117 GKVHTTQKELEHRDEHVGTAESGPAEPPPATEVEATSIAQAVSGPDKKLPTQTDLVSQER 176

Query: 369 KQ 364
+
Sbjct: 177 AE 178


tr_hit_id A9SEY9
Definition tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 141
Score (bit) 97.8
E-value 3.0e-19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945617|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O13, 5'
(550 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella paten... 98 3e-19
tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea... 85 3e-15
tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana GN=At3g... 46 0.001
tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein OS=Arabi... 46 0.001
tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004
tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane trans... 44 0.006
tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subs... 44 0.007
tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, who... 42 0.028
tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein OS=Branc... 36 1.2
tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae G... 35 2.0
tr|A2ZJC1|A2ZJC1_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.5
tr|Q3U5X7|Q3U5X7_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9
tr|Q3TXN3|Q3TXN3_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9
tr|Q3TBY6|Q3TBY6_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9
tr|A8J9C4|A8J9C4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 34 5.9
tr|A7TK46|A7TK46_VANPO Putative uncharacterized protein OS=Vande... 34 5.9
tr|Q2GEZ4|Q2GEZ4_NEOSM Putative uncharacterized protein OS=Neori... 33 7.7
tr|Q2GTY0|Q2GTY0_CHAGB Putative uncharacterized protein OS=Chaet... 33 7.7
tr|A8U572|A8U572_9LACT ATP synthase A chain OS=Carnobacterium sp... 33 9.8
tr|B4KUZ1|B4KUZ1_DROMO GI12163 OS=Drosophila mojavensis GN=GI121... 33 10.0
tr|B0CNT1|B0CNT1_LACBS Dynactin OS=Laccaria bicolor (strain S238... 33 10.0

>tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_233124 PE=4 SV=1
Length = 323

Score = 97.8 bits (242), Expect = 3e-19
Identities = 54/141 (38%), Positives = 73/141 (51%)
Frame = +2

Query: 116 SPSGRPLDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSMGGNWAIAT 295
SP GRPLDY+GS W RI +++ + Q S+G N+ IA
Sbjct: 21 SPGGRPLDYRGSDGWGYRILSKSLAAGGFGAGAGLLVGAVRGQPALRLGLSVGTNFLIAA 80

Query: 296 CVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLFAFVGTGIN 475
F QE++RE+RAAEP++ + GG AR LPM +LFA VGTG+
Sbjct: 81 SCFGAAQEISRELRAAEPENLIDAAVGGFASGALLGHFHGGRARTLPMGILFAVVGTGLQ 140

Query: 476 HGADLFKEYRLQRLLASLPSE 538
GA +KEYR++ L +LPSE
Sbjct: 141 LGAAEYKEYRIRHFLNTLPSE 161


>tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 208

Score = 84.7 bits (208), Expect = 3e-15
Identities = 54/145 (37%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Frame = +2

Query: 107 GGFSPSGRP-----LDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSM 271
GG P P +Y+GS+ W+ RI T + S++
Sbjct: 6 GGGKPKQEPGRRRVSNYEGSKGWQERIYIPTLTAGVLGGGAGLLGGYSRGHGMARLSSAY 65

Query: 272 GGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLF 451
N AI T FCG QEL RE+RAAEP D N RIQGG RA A +F
Sbjct: 66 AINLAIVTSCFCGAQELVRELRAAEPGDPINSVLGGIASGGFLGRIQGGRPRAFQYAFMF 125

Query: 452 AFVGTGINHGADLFKEYRLQRLLAS 526
A VGTG+ +GA F+EYR Q+ L S
Sbjct: 126 ALVGTGLQYGAHKFQEYRSQQYLES 150


>tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana
GN=At3g25120 PE=2 SV=1
Length = 189

Score = 45.8 bits (107), Expect = 0.001
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2

Query: 263 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 442
T N+AI +CG +E R R +E DD N R+QGGP A+ +
Sbjct: 62 TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYS 121

Query: 443 VLFAFVGTGINH----GADLFKEYR 505
++FA VGT ++ G + + YR
Sbjct: 122 LVFAAVGTAFDYATLKGKPMLESYR 146


>tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 189

Score = 45.8 bits (107), Expect = 0.001
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2

Query: 263 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 442
T N+AI +CG +E R R +E DD N R+QGGP A+ +
Sbjct: 62 TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLARLQGGPKGAIRYS 121

Query: 443 VLFAFVGTGINH----GADLFKEYR 505
++FA VGT ++ G + + YR
Sbjct: 122 LVFAAVGTAFDYATLKGKPILESYR 146


>tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_15570 PE=4 SV=1
Length = 197

Score = 44.3 bits (103), Expect = 0.004
Identities = 26/75 (34%), Positives = 36/75 (48%)
Frame = +2

Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439
+ + N AI + G +EL R+ RA+ PDD N RIQGG A+
Sbjct: 58 TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117

Query: 440 AVLFAFVGTGINHGA 484
AV FA GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane
translocase subunit Tim17 family protein OS=Zea mays
PE=2 SV=1
Length = 193

Score = 43.9 bits (102), Expect = 0.006
Identities = 26/75 (34%), Positives = 35/75 (46%)
Frame = +2

Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439
+ + N AI + G +EL R+ RA PDD N RIQGG A+
Sbjct: 58 AVTYAANLAIVAGCYGGARELARDARATTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117

Query: 440 AVLFAFVGTGINHGA 484
AV FA GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0006N15.9 PE=2 SV=2
Length = 197

Score = 43.5 bits (101), Expect = 0.007
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +2

Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439
+ + N AI + G +EL R+ RA+ PDD N R+QGG A+
Sbjct: 58 TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRLQGGHFGAVKY 117

Query: 440 AVLFAFVGTGINHGA 484
AV FA GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010538001 PE=4 SV=1
Length = 193

Score = 41.6 bits (96), Expect = 0.028
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2

Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439
S + N+AI T +CG +E R R PDD + +QGG A A+
Sbjct: 57 SATYAANFAIVTGCYCGAREFVRRNRGTGPDDLISSAVGGFGSGAILGCLQGGRAGAVRY 116

Query: 440 AVLFAFVGTGIN 475
+V+F+ GT ++
Sbjct: 117 SVMFSVAGTSVD 128


>tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_69368 PE=4 SV=1
Length = 823

Score = 36.2 bits (82), Expect = 1.2
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Frame = -1

Query: 481 TMVYSCTNKSEQYSHWKSSCRPTLNPAQQSS-----------TRKPTKKAISPIIWLSSS 335
++ Y+ TNK+ Q S + +CR + N Q S +PTK + S + WL S
Sbjct: 607 SLSYTSTNKTVQQSCYLPACRTSTNQTVQQSCYLVGAVPQLVVHQPTKLSNSLVTWLVLS 666

Query: 334 NFPSQLLKP 308
+ PS + KP
Sbjct: 667 HNPSYINKP 675


>tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae
GN=AO090010000633 PE=4 SV=1
Length = 620

Score = 35.4 bits (80), Expect = 2.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3

Query: 113 IHPFVLQSSAADDWNSPPHRMLPYEREREREVPLC 9
I PF+ ++ A W SPP+ M P +R+R R++ C
Sbjct: 16 IFPFIARTQAPHTWKSPPYGMTPRQRKRWRQLWQC 50