DK945617 |
Clone id |
YMU02A01NGRL0009_O13 |
Library |
YMU02 |
Length |
550 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O13. 5' end sequence. |
Accession |
DK945617 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL675Contig1 |
Sequence |
CTCTAACCACACAGTGGCACCTCTCTCTCTCTCTCTCTCTCGTATGGCAGCATCCGATGA GGAGGAGAGTTCCAGTCGTCGGCGGCAGAGGATTGCAGAACGAAGGGGTGGATTCAGCCC GAGCGGACGGCCTCTCGACTATCAAGGAAGCCAGAATTGGGAGACTCGAATTGCCACTCG CACTTTCTATGGAGCTGCAATTGGAGCTCTTGCTGGACTGGGAGTGGGAATCTACAAAAA GCAGAATCCTTTTATATGGTCTACATCAATGGGAGGCAATTGGGCGATAGCTACATGCGT CTTTTGTGGGTTTCAAGAGTTGACTCGGGAAATTCGAGCTGCTGAGCCAGATGATTGGGC TAATTGCTTTCTTGGTGGGCTTGCGAGTGGAGCTTTGCTGGGCAGGATTCAAGGTGGGCC TGCAAGAGCTCTTCCAATGGCTGTACTGTTCGCTTTTGTTGGTACAGGAATAAACCATGG TGCGGATCTTTTCAAAGAATACAGGCTGCAACGTCTGTTGGCCTCTCTACCTTCTGAAGA CGCCCTGCCT |
■■Homology search results ■■ |
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Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q921V5 |
Definition |
sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus |
Align length |
66 |
Score (bit) |
33.9 |
E-value |
0.54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945617|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_O13, 5' (550 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-a... 34 0.54 sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein 2-beta-N-ace... 33 0.70 sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium ... 31 4.5 sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita G... 31 4.6 sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicas... 30 5.9 sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicas... 30 5.9 sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicas... 30 5.9 sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul... 30 6.0 sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1 OS=Chl... 30 7.8 sp|P15304|LIPS_RAT Hormone-sensitive lipase OS=Rattus norvegicus... 30 7.8
>sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus GN=Mgat2 PE=2 SV=1 Length = 442
Score = 33.9 bits (76), Expect = 0.54 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = -1
Query: 439 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 263 H K +CRP+ AQ S K+ + P + FP + P + + I H C Sbjct: 376 HHKKTCRPSTQSAQIESLLNSNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435
Query: 262 RPYKRI 245 + Y+R+ Sbjct: 436 KSYRRL 441
>sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat2 PE=1 SV=1 Length = 442
Score = 33.5 bits (75), Expect = 0.70 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = -1
Query: 439 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 263 H K +CRP+ AQ S K+ + P + FP + P + + I H C Sbjct: 376 HHKKTCRPSTQSAQIESLLNNNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435
Query: 262 RPYKRI 245 + Y+R+ Sbjct: 436 KSYRRL 441
>sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium thermophilum GN=nfo PE=3 SV=1 Length = 276
Score = 30.8 bits (68), Expect = 4.5 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -3
Query: 464 YQQKRTVQPLEELLQAHLESCPAKLHSQAHQESN*PNHLAQQLE 333 Y + R V+ L LL+A+ SCP L + A S HL + +E Sbjct: 116 YGRARMVETLNRLLEAYTGSCPLLLENTAGMGSELGTHLEELME 159
>sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita GN=AA-PRI1 PE=2 SV=1 Length = 145
Score = 30.8 bits (68), Expect = 4.6 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +1
Query: 181 HFLWSCNWSS---CWTGSGNLQKAESFYMVYINGRQLGDSYMRLLWVSRVDSGN 333 HF W C W S WT SG+ K +MV +G+ L + + V + GN Sbjct: 96 HFYWECPWGSKRNTWTPSGSNTK----WMVEWSGQNLDSGALGTITVDVLRKGN 145
>sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicase ruvB OS=Pelobacter propionicus (strain DSM 2379) GN=ruvB PE=3 SV=1 Length = 338
Score = 30.4 bits (67), Expect = 5.9 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3
Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408 +ERP D+AA + +PH LF+ + R +EE+L +E Sbjct: 88 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128
>sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicase ruvB OS=Geobacter sulfurreducens GN=ruvB PE=3 SV=1 Length = 338
Score = 30.4 bits (67), Expect = 5.9 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3
Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408 +ERP D+AA + +PH LF+ + R +EE+L +E Sbjct: 88 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128
>sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicase ruvB OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ruvB PE=3 SV=1 Length = 338
Score = 30.4 bits (67), Expect = 5.9 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3
Query: 530 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 408 +ERP D+AA + +PH LF+ + R +EE+L +E Sbjct: 87 IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 127
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1 Length = 3053
Score = 30.4 bits (67), Expect = 6.0 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = -1
Query: 505 PVFFEKIRTMVYSCTNKSEQYSH----WKSSCRPTLNPAQQSSTRKPTKKAISP 356 PV E ++ M+ S + E YS +K+ C + + + ST PTK ++SP Sbjct: 736 PVPLESVKEMLNSVMQELEDYSEGGTLYKNGCWRSADSELKHSTPSPTKYSLSP 789
>sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1 OS=Chlamydia pneumoniae GN=pmp1 PE=2 SV=1 Length = 922
Score = 30.0 bits (66), Expect = 7.8 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1
Query: 181 HFLWSCNWSSCWTGSGNLQKAESFYMVYINGR----QLGDSYMRLLWVSRVD 324 H+ + NW WTG+GN K F+ IN + + G+ +LW + VD Sbjct: 557 HYGFQGNWKLAWTGTGN--KVGEFFWDKINYKPRPEKEGNLVPNILWGNAVD 606
>sp|P15304|LIPS_RAT Hormone-sensitive lipase OS=Rattus norvegicus GN=Lipe PE=1 SV=3 Length = 1068
Score = 30.0 bits (66), Expect = 7.8 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -2
Query: 549 GRASSEGREANRRCSLYSLKRSAPWFIPVPTKANSTAIGRALAGPP*ILPSKAPLASPPR 370 G+ + +E R S P P T+ +T+I +A++GP LP++ L S R Sbjct: 117 GKVHTTQKELEHRDEHVGTAESGPAEPPPATEVEATSIAQAVSGPDKKLPTQTDLVSQER 176
Query: 369 KQ 364 + Sbjct: 177 AE 178
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TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SEY9 |
Definition |
tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
141 |
Score (bit) |
97.8 |
E-value |
3.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945617|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_O13, 5' (550 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella paten... 98 3e-19 tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea... 85 3e-15 tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana GN=At3g... 46 0.001 tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein OS=Arabi... 46 0.001 tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004 tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane trans... 44 0.006 tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subs... 44 0.007 tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, who... 42 0.028 tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein OS=Branc... 36 1.2 tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae G... 35 2.0 tr|A2ZJC1|A2ZJC1_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.5 tr|Q3U5X7|Q3U5X7_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9 tr|Q3TXN3|Q3TXN3_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9 tr|Q3TBY6|Q3TBY6_MOUSE Putative uncharacterized protein OS=Mus m... 34 5.9 tr|A8J9C4|A8J9C4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 34 5.9 tr|A7TK46|A7TK46_VANPO Putative uncharacterized protein OS=Vande... 34 5.9 tr|Q2GEZ4|Q2GEZ4_NEOSM Putative uncharacterized protein OS=Neori... 33 7.7 tr|Q2GTY0|Q2GTY0_CHAGB Putative uncharacterized protein OS=Chaet... 33 7.7 tr|A8U572|A8U572_9LACT ATP synthase A chain OS=Carnobacterium sp... 33 9.8 tr|B4KUZ1|B4KUZ1_DROMO GI12163 OS=Drosophila mojavensis GN=GI121... 33 10.0 tr|B0CNT1|B0CNT1_LACBS Dynactin OS=Laccaria bicolor (strain S238... 33 10.0
>tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233124 PE=4 SV=1 Length = 323
Score = 97.8 bits (242), Expect = 3e-19 Identities = 54/141 (38%), Positives = 73/141 (51%) Frame = +2
Query: 116 SPSGRPLDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSMGGNWAIAT 295 SP GRPLDY+GS W RI +++ + Q S+G N+ IA Sbjct: 21 SPGGRPLDYRGSDGWGYRILSKSLAAGGFGAGAGLLVGAVRGQPALRLGLSVGTNFLIAA 80
Query: 296 CVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLFAFVGTGIN 475 F QE++RE+RAAEP++ + GG AR LPM +LFA VGTG+ Sbjct: 81 SCFGAAQEISRELRAAEPENLIDAAVGGFASGALLGHFHGGRARTLPMGILFAVVGTGLQ 140
Query: 476 HGADLFKEYRLQRLLASLPSE 538 GA +KEYR++ L +LPSE Sbjct: 141 LGAAEYKEYRIRHFLNTLPSE 161
>tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 208
Score = 84.7 bits (208), Expect = 3e-15 Identities = 54/145 (37%), Positives = 67/145 (46%), Gaps = 5/145 (3%) Frame = +2
Query: 107 GGFSPSGRP-----LDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSM 271 GG P P +Y+GS+ W+ RI T + S++ Sbjct: 6 GGGKPKQEPGRRRVSNYEGSKGWQERIYIPTLTAGVLGGGAGLLGGYSRGHGMARLSSAY 65
Query: 272 GGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLF 451 N AI T FCG QEL RE+RAAEP D N RIQGG RA A +F Sbjct: 66 AINLAIVTSCFCGAQELVRELRAAEPGDPINSVLGGIASGGFLGRIQGGRPRAFQYAFMF 125
Query: 452 AFVGTGINHGADLFKEYRLQRLLAS 526 A VGTG+ +GA F+EYR Q+ L S Sbjct: 126 ALVGTGLQYGAHKFQEYRSQQYLES 150
>tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana GN=At3g25120 PE=2 SV=1 Length = 189
Score = 45.8 bits (107), Expect = 0.001 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2
Query: 263 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 442 T N+AI +CG +E R R +E DD N R+QGGP A+ + Sbjct: 62 TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYS 121
Query: 443 VLFAFVGTGINH----GADLFKEYR 505 ++FA VGT ++ G + + YR Sbjct: 122 LVFAAVGTAFDYATLKGKPMLESYR 146
>tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 189
Score = 45.8 bits (107), Expect = 0.001 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2
Query: 263 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 442 T N+AI +CG +E R R +E DD N R+QGGP A+ + Sbjct: 62 TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLARLQGGPKGAIRYS 121
Query: 443 VLFAFVGTGINH----GADLFKEYR 505 ++FA VGT ++ G + + YR Sbjct: 122 LVFAAVGTAFDYATLKGKPILESYR 146
>tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15570 PE=4 SV=1 Length = 197
Score = 44.3 bits (103), Expect = 0.004 Identities = 26/75 (34%), Positives = 36/75 (48%) Frame = +2
Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439 + + N AI + G +EL R+ RA+ PDD N RIQGG A+ Sbjct: 58 TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117
Query: 440 AVLFAFVGTGINHGA 484 AV FA GT +++ A Sbjct: 118 AVTFAAAGTALDYAA 132
>tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane translocase subunit Tim17 family protein OS=Zea mays PE=2 SV=1 Length = 193
Score = 43.9 bits (102), Expect = 0.006 Identities = 26/75 (34%), Positives = 35/75 (46%) Frame = +2
Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439 + + N AI + G +EL R+ RA PDD N RIQGG A+ Sbjct: 58 AVTYAANLAIVAGCYGGARELARDARATTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117
Query: 440 AVLFAFVGTGINHGA 484 AV FA GT +++ A Sbjct: 118 AVTFAAAGTALDYAA 132
>tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0006N15.9 PE=2 SV=2 Length = 197
Score = 43.5 bits (101), Expect = 0.007 Identities = 25/75 (33%), Positives = 36/75 (48%) Frame = +2
Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439 + + N AI + G +EL R+ RA+ PDD N R+QGG A+ Sbjct: 58 TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRLQGGHFGAVKY 117
Query: 440 AVLFAFVGTGINHGA 484 AV FA GT +++ A Sbjct: 118 AVTFAAAGTALDYAA 132
>tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010538001 PE=4 SV=1 Length = 193
Score = 41.6 bits (96), Expect = 0.028 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = +2
Query: 260 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 439 S + N+AI T +CG +E R R PDD + +QGG A A+ Sbjct: 57 SATYAANFAIVTGCYCGAREFVRRNRGTGPDDLISSAVGGFGSGAILGCLQGGRAGAVRY 116
Query: 440 AVLFAFVGTGIN 475 +V+F+ GT ++ Sbjct: 117 SVMFSVAGTSVD 128
>tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_69368 PE=4 SV=1 Length = 823
Score = 36.2 bits (82), Expect = 1.2 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 11/69 (15%) Frame = -1
Query: 481 TMVYSCTNKSEQYSHWKSSCRPTLNPAQQSS-----------TRKPTKKAISPIIWLSSS 335 ++ Y+ TNK+ Q S + +CR + N Q S +PTK + S + WL S Sbjct: 607 SLSYTSTNKTVQQSCYLPACRTSTNQTVQQSCYLVGAVPQLVVHQPTKLSNSLVTWLVLS 666
Query: 334 NFPSQLLKP 308 + PS + KP Sbjct: 667 HNPSYINKP 675
>tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae GN=AO090010000633 PE=4 SV=1 Length = 620
Score = 35.4 bits (80), Expect = 2.0 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -3
Query: 113 IHPFVLQSSAADDWNSPPHRMLPYEREREREVPLC 9 I PF+ ++ A W SPP+ M P +R+R R++ C Sbjct: 16 IFPFIARTQAPHTWKSPPYGMTPRQRKRWRQLWQC 50
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