DK945622
Clone id YMU02A01NGRL0009_O19
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACCTGTGTATCCTCACAGCAGGAGGGCGTCGATATGAGCCCGGCTGCCGTGGATATGAGC
AGCAGCGCCATGGATGCTCTCTCCTGTGCGAGCCTCTCTGTGCGCCAGTCATCCCTCCGG
CGCTGGTCCTCCTCTCCTCTGTTCGCCAATCGCCTGGCTATGCCCAGCTCTGAGCTTCCT
TTGTGCCGCTCTACCTCAGGTGCTTCGTCGTCTCCTTCAAAGCCTCTCACTATAGCTAAC
TCTTACAGCCCCAGGCGGCCTTCTGATAGAAGCTTCAGAAGGGACCAGCCCAACGTGTAC
GAGCTGGACTTGGAGGAGCAGGTGAGCCAGATTGATATGGATCCCAACAAGATGCTACAG
CCTGGAGACCCCAATTCTATGCAGGCCATTATTAAGGATGTCATGCCTGTAGGTTACTTC
GTCTCTCTGCCCACAGGCAGAGATGGGTATCTTCCAGCAGATGACTTGGGCTTTACAGGT
GGGCTTGCTATTCTGCGCAAGCTTTTCAAGAAGGGTCAAGAGATTACTGTGCGCATTGTT
TGTCGCGGTGGGGCAGGAAGGGAGATTGTTTCTGTGAAAAAGCCTGAGTTTGCCCCTCCC
AGTGAGC
■■Homology search results ■■ -
sp_hit_id Q9JZ44
Definition sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
Align length 52
Score (bit) 34.7
E-value 0.39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945622|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O19, 5'
(607 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening... 35 0.39
sp|Q8R370|USBP1_MOUSE USH1C-binding protein 1 OS=Mus musculus GN... 32 1.9
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS... 32 1.9
sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp.... 32 2.5
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03... 32 2.5
sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase... 32 2.5
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS... 32 3.3
sp|P20806|7LESS_DROVI Protein sevenless OS=Drosophila virilis GN... 31 4.3
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS... 31 4.3
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS... 31 4.3
sp|O36027|WSP1_SCHPO Wiskott-Aldrich syndrome protein homolog 1 ... 31 5.6
sp|A6NMK8|YE035_HUMAN Uncharacterized protein LOC100131897 OS=Ho... 31 5.6
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS... 31 5.6
sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c OS=Schizos... 30 7.3
sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing rece... 30 7.4
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS... 30 9.6
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS... 30 9.6

>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria
meningitidis serogroup B GN=rpsA PE=1 SV=1
Length = 561

Score = 34.7 bits (78), Expect = 0.39
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1

Query: 373 NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFT-GGLAILRKLFKKGQEI 525
+ + +K + G FV LP G DG + DL +T G +RK +KKG+E+
Sbjct: 366 DKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRK-YKKGEEV 416


>sp|Q8R370|USBP1_MOUSE USH1C-binding protein 1 OS=Mus musculus
GN=Ushbp1 PE=2 SV=1
Length = 680

Score = 32.3 bits (72), Expect = 1.9
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -3

Query: 182 KGSSELGIARRLANRGEEDQRRRDDWRTERLAQERASMALLLISTAAGL 36
K S L +A R A+R +E+QRR+ + + RL ++A +L +TA L
Sbjct: 619 KAHSALALAFRGAHRKQEEQRRKLEQQVARLQAQQAEELAVLTATARAL 667


>sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase
OS=Roseiflexus sp. (strain RS-1) GN=pnp PE=3 SV=1
Length = 747

Score = 32.3 bits (72), Expect = 1.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1

Query: 400 VMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540
+MP G FV+L G+DG + +L G + + + K G EI V ++
Sbjct: 639 IMPFGAFVNLAPGKDGMVHVSELD-VGRVENVEDVIKMGDEINVMVI 684


>sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp.
japonica GN=FH7 PE=2 SV=2
Length = 1385

Score = 32.0 bits (71), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3

Query: 584 GFFTETISLPAPPRQTMRTVIS*PFLKSLRRIASPPVKPKSSAGRYPSLPVGRE 423
G T I P PP QT V S P + +RI PP P ++ SLP R+
Sbjct: 817 GMQTRPIPPPPPPSQTNSLVSSFP--STSKRIPPPPPPPSQTSSLVSSLPSSRK 868


>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
Length = 579

Score = 32.0 bits (71), Expect = 2.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1

Query: 364 GDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIVC 543
G+ + A+IK V VG+ + G +P D G+ GG I +K F+ G + +
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHGFKGFCSVYT 271

Query: 544 RGG---AGREIVSVKKPEFAPP 600
+G EIV + E P
Sbjct: 272 TAAFSFSGTEIVGLAAAEVGDP 293


>sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase 28
OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2
Length = 683

Score = 32.0 bits (71), Expect = 2.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1

Query: 418 FVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITV-RIVCRGGAG 558
F +L D + P ++LG G ++ + +F GQEI V R+ C G G
Sbjct: 351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQG 398


>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=pnp PE=3 SV=1
Length = 711

Score = 31.6 bits (70), Expect = 3.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1

Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540
++ VMP G FV G+DG L ++ + I K+G EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685


>sp|P20806|7LESS_DROVI Protein sevenless OS=Drosophila virilis GN=sev
PE=3 SV=1
Length = 2594

Score = 31.2 bits (69), Expect = 4.3
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3

Query: 65 LLLISTAAGLISTPSCCEDTQ 3
LLL +TAA L STPS CE+TQ
Sbjct: 1706 LLLPTTAAALESTPSSCEETQ 1726


>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
OS=Bacteroides fragilis GN=pnp PE=3 SV=1
Length = 708

Score = 31.2 bits (69), Expect = 4.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1

Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540
++ +MP G FV G+DG L ++ + + K+G EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
GN=pnp PE=3 SV=1
Length = 708

Score = 31.2 bits (69), Expect = 4.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1

Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540
++ +MP G FV G+DG L ++ + + K+G EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


tr_hit_id A7PEK9
Definition tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 73
Score (bit) 39.3
E-value 0.18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945622|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O19, 5'
(607 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 39 0.18
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 39 0.31
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 37 0.89
tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.89
tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.89
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 37 1.2
tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2
tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2
tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2
tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 36 1.5
tr|B0VI92|B0VI92_9BACT 30S ribosomal subunit protein S1 (Modular... 36 1.5
tr|B8P873|B8P873_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.5
tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum... 36 2.0
tr|B8PLX5|B8PLX5_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0
tr|B8PLJ0|B8PLJ0_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0
tr|B8PJD5|B8PJD5_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0
tr|B8P9K3|B8P9K3_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0
tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu... 35 2.6
tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba... 35 2.6
tr|Q7X1F1|Q7X1F1_9BACT Lfe154p1 (Fragment) OS=Leptospirillum fer... 35 2.6
tr|B8PKA8|B8PKA8_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6
tr|B8PJB7|B8PJB7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6
tr|B8P4Q7|B8P4Q7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6
tr|Q7UVM0|Q7UVM0_RHOBA 30S ribosomal protein S1 OS=Rhodopirellul... 35 3.4
tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen... 35 3.4
tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter... 35 3.4
tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 35 3.4
tr|B8P242|B8P242_9APHY Predicted protein OS=Postia placenta Mad-... 35 3.4
tr|Q5F905|Q5F905_NEIG1 Putative 30S ribosomal protein S1 OS=Neis... 35 4.4

>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
PE=4 SV=1
Length = 553

Score = 39.3 bits (90), Expect = 0.18
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1

Query: 379 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKKGQEITVRIVCRGGA 555
++ +K++ G F+SLP G +G+LP + G G + + GQE++VR++ R
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 556 GREIVSVKKPEFA 594
G+ +++KK E A
Sbjct: 325 GQVTLTMKKEEDA 337


>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
Length = 715

Score = 38.5 bits (88), Expect = 0.31
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1

Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIVCRGGAGREIV 570
+K +MP G FV + G+DG L ++ +T L + +FK+G ++ V+++ G+ +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694

Query: 571 SVK-------KPEFAPPSE 606
S K KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713


>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
PE=4 SV=1
Length = 150

Score = 37.0 bits (84), Expect = 0.89
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1

Query: 412 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIVCRGGAGREIVSVKKPEF 591
G FVSLP G+ G + ++ ++ + ++ K+GQE+ V+++ GR +S+KK
Sbjct: 20 GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78

Query: 592 APP 600
PP
Sbjct: 79 PPP 81


>tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_104026 PE=4 SV=1
Length = 355

Score = 37.0 bits (84), Expect = 0.89
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 101 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARITAAE 157

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 158 GLLSDPA 164


>tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-698-R
GN=POSPLDRAFT_97308 PE=4 SV=1
Length = 1213

Score = 37.0 bits (84), Expect = 0.89
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 931 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 987

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 988 GLLSDPA 994


>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
SV=1
Length = 616

Score = 36.6 bits (83), Expect = 1.2
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1

Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540
I ++ G V LP+G DG++PA L GG+ + FK G E+ ++++
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVI 534


>tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_96931 PE=4 SV=1
Length = 332

Score = 36.6 bits (83), Expect = 1.2
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 98 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 154

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 155 GLLSDPA 161


>tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_98462 PE=4 SV=1
Length = 249

Score = 36.6 bits (83), Expect = 1.2
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 115 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 171

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 172 GLLSDPA 178


>tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_97913 PE=4 SV=1
Length = 362

Score = 36.6 bits (83), Expect = 1.2
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 108 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 164

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 165 GLLSDPA 171


>tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_106563 PE=4 SV=1
Length = 374

Score = 36.6 bits (83), Expect = 1.2
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3

Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42
++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A
Sbjct: 107 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELAQIAAAE 163

Query: 41 GLISTPS 21
GL+S P+
Sbjct: 164 GLLSDPA 170