DK945622 |
Clone id |
YMU02A01NGRL0009_O19 |
Library |
YMU02 |
Length |
607 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O19. 5' end sequence. |
Accession |
DK945622 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL106Contig1 |
Sequence |
ACCTGTGTATCCTCACAGCAGGAGGGCGTCGATATGAGCCCGGCTGCCGTGGATATGAGC AGCAGCGCCATGGATGCTCTCTCCTGTGCGAGCCTCTCTGTGCGCCAGTCATCCCTCCGG CGCTGGTCCTCCTCTCCTCTGTTCGCCAATCGCCTGGCTATGCCCAGCTCTGAGCTTCCT TTGTGCCGCTCTACCTCAGGTGCTTCGTCGTCTCCTTCAAAGCCTCTCACTATAGCTAAC TCTTACAGCCCCAGGCGGCCTTCTGATAGAAGCTTCAGAAGGGACCAGCCCAACGTGTAC GAGCTGGACTTGGAGGAGCAGGTGAGCCAGATTGATATGGATCCCAACAAGATGCTACAG CCTGGAGACCCCAATTCTATGCAGGCCATTATTAAGGATGTCATGCCTGTAGGTTACTTC GTCTCTCTGCCCACAGGCAGAGATGGGTATCTTCCAGCAGATGACTTGGGCTTTACAGGT GGGCTTGCTATTCTGCGCAAGCTTTTCAAGAAGGGTCAAGAGATTACTGTGCGCATTGTT TGTCGCGGTGGGGCAGGAAGGGAGATTGTTTCTGTGAAAAAGCCTGAGTTTGCCCCTCCC AGTGAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9JZ44 |
Definition |
sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B |
Align length |
52 |
Score (bit) |
34.7 |
E-value |
0.39 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PEK9 |
Definition |
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
73 |
Score (bit) |
39.3 |
E-value |
0.18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945622|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_O19, 5' (607 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 39 0.18 tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 39 0.31 tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 37 0.89 tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.89 tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.89 tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 37 1.2 tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2 tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2 tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2 tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.2 tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 36 1.5 tr|B0VI92|B0VI92_9BACT 30S ribosomal subunit protein S1 (Modular... 36 1.5 tr|B8P873|B8P873_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.5 tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum... 36 2.0 tr|B8PLX5|B8PLX5_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0 tr|B8PLJ0|B8PLJ0_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0 tr|B8PJD5|B8PJD5_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0 tr|B8P9K3|B8P9K3_9APHY Predicted protein OS=Postia placenta Mad-... 36 2.0 tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu... 35 2.6 tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba... 35 2.6 tr|Q7X1F1|Q7X1F1_9BACT Lfe154p1 (Fragment) OS=Leptospirillum fer... 35 2.6 tr|B8PKA8|B8PKA8_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6 tr|B8PJB7|B8PJB7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6 tr|B8P4Q7|B8P4Q7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6 tr|Q7UVM0|Q7UVM0_RHOBA 30S ribosomal protein S1 OS=Rhodopirellul... 35 3.4 tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen... 35 3.4 tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter... 35 3.4 tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 35 3.4 tr|B8P242|B8P242_9APHY Predicted protein OS=Postia placenta Mad-... 35 3.4 tr|Q5F905|Q5F905_NEIG1 Putative 30S ribosomal protein S1 OS=Neis... 35 4.4
>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001 PE=4 SV=1 Length = 553
Score = 39.3 bits (90), Expect = 0.18 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +1
Query: 379 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKKGQEITVRIVCRGGA 555 ++ +K++ G F+SLP G +G+LP + G G + + GQE++VR++ R Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324
Query: 556 GREIVSVKKPEFA 594 G+ +++KK E A Sbjct: 325 GQVTLTMKKEEDA 337
>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1 Length = 715
Score = 38.5 bits (88), Expect = 0.31 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Frame = +1
Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIVCRGGAGREIV 570 +K +MP G FV + G+DG L ++ +T L + +FK+G ++ V+++ G+ + Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694
Query: 571 SVK-------KPEFAPPSE 606 S K KPE AP ++ Sbjct: 695 SRKVLLPRPPKPEGAPANK 713
>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512 PE=4 SV=1 Length = 150
Score = 37.0 bits (84), Expect = 0.89 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = +1
Query: 412 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIVCRGGAGREIVSVKKPEF 591 G FVSLP G+ G + ++ ++ + ++ K+GQE+ V+++ GR +S+KK Sbjct: 20 GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78
Query: 592 APP 600 PP Sbjct: 79 PPP 81
>tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_104026 PE=4 SV=1 Length = 355
Score = 37.0 bits (84), Expect = 0.89 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 101 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARITAAE 157
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 158 GLLSDPA 164
>tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_97308 PE=4 SV=1 Length = 1213
Score = 37.0 bits (84), Expect = 0.89 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 931 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 987
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 988 GLLSDPA 994
>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4 SV=1 Length = 616
Score = 36.6 bits (83), Expect = 1.2 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +1
Query: 391 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKKGQEITVRIV 540 I ++ G V LP+G DG++PA L GG+ + FK G E+ ++++ Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVI 534
>tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_96931 PE=4 SV=1 Length = 332
Score = 36.6 bits (83), Expect = 1.2 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 98 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 154
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 155 GLLSDPA 161
>tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_98462 PE=4 SV=1 Length = 249
Score = 36.6 bits (83), Expect = 1.2 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 115 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 171
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 172 GLLSDPA 178
>tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_97913 PE=4 SV=1 Length = 362
Score = 36.6 bits (83), Expect = 1.2 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 108 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 164
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 165 GLLSDPA 171
>tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_106563 PE=4 SV=1 Length = 374
Score = 36.6 bits (83), Expect = 1.2 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -3
Query: 212 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 42 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 107 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELAQIAAAE 163
Query: 41 GLISTPS 21 GL+S P+ Sbjct: 164 GLLSDPA 170
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