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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945627
Clone id YMU02A01NGRL0009_P03
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_P03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAGTAGCCGGAGGAGGAAAA
AGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGAGCCTAAACCGTGAAGAC
GGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCAC
CCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAG
CATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTC
CTGAGTGACCGATAGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945627|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_P03, 5'
         (317 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   0.57 
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   3.7  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   4.8  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   4.8  
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral...    30   4.8  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 95  FHSPLLGESLLLFPPPATKMFQFAGLSL 12
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 128 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 235
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 176 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 283
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 176 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 283
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
           (strain HTCC2594) GN=efp PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 110 TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 238
           TV+  LWE     V L + VE    + D+ V G TASS   P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 50
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945627|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_P03, 5'
         (317 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    83   8e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    83   8e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    69   2e-10
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            54   3e-10
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   3e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   6e-09
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    45   3e-07
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    47   1e-06
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            52   1e-05
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   1e-04
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    43   0.007
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    42   0.012
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    42   0.012
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    42   0.020
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.026
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    40   0.044
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    40   0.058
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    39   0.099
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    39   0.13 

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 316
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 72


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 316
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 78


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 316
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 81


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 316
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 76


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +2

Query: 188 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDS 316
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDS
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDS 43


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 54.3 bits (129), Expect(2) = 3e-10
 Identities = 28/36 (77%), Positives = 28/36 (77%)
 Frame = -1

Query: 113 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVC 6
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLAC 80



 Score = 33.5 bits (75), Expect(2) = 3e-10
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -3

Query: 243 MLLGLERELAVLPATGLSPSGVQ 175
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 33/59 (55%), Positives = 39/59 (66%)
 Frame = +2

Query: 98  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 274
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +2

Query: 98  GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 274
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH   +  +R
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = -2

Query: 316 AIGHSGIFSLTRWSSLIHTGFCVPHAT 236
           AI H  +FSL RWS LIHTGF VPHAT
Sbjct: 246 AISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 32.0 bits (71), Expect(2) = 3e-07
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 219 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 112
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 47.4 bits (111), Expect(2) = 1e-06
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -1

Query: 110 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSL 12
           F LFPF SPLL ES LL  PP TKMFQF G +L
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCAL 99



 Score = 28.1 bits (61), Expect(2) = 1e-06
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 279 GPR*FTRDFACPMLLGLERELAVLPATGLSPS 184
           GP  F RD +CP +L +      +  TGLSPS
Sbjct: 4   GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35